CV884337

Overview
NameCV884337
Unique NameCV884337
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length858
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11173 contig Csv1_Contig11173:729..1586. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: DXS_PELCD (1-deoxy-D-xylulose-5-phosphate synthase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=dxs PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.037e-11
Identity = 38/110 (34.55%), Postives = 61/110 (55.45%), Query Frame = -3
Query:  515 YGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFS 844
            Y     +  E+ DS   +PIGK +  R+G D  I A   +   +L A++ILA EG+S  V++ R ++PLD+  + A  R+T  +VTVEE   Q G G+ +   + +E  +
Sbjct:  472 YPRGKALGLELPDSVESMPIGKGEKLRDGSDAVIFALGVVCKEALVASDILAGEGLSVAVVDPRFLKPLDQQLLIAEARRTGVVVTVEENVRQGGFGSAVLEMLADEGLA 581          
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: DXS_DESPS (1-deoxy-D-xylulose-5-phosphate synthase OS=Desulfotalea psychrophila GN=dxs PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.037e-11
Identity = 40/107 (37.38%), Postives = 62/107 (57.94%), Query Frame = -3
Query:  521 GESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEES 841
            GE    S E+ +S   L IG+ ++ REG D+ +      V  +++AAE LAK+GISA VIN R I+PLD   I    +KT R++T+E+     G G+ +   + ++S
Sbjct:  486 GEDVSTSQEI-ESIPILEIGRGELLREGDDILLLPIGNRVYPAMRAAEELAKQGISASVINPRFIKPLDAELICQQAKKTGRIITIEDNTLCSGFGSAVLELLSQKS 591          
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: DXS_ACAM1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Acaryochloris marina (strain MBIC 11017) GN=dxs PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.273e-11
Identity = 39/112 (34.82%), Postives = 64/112 (57.14%), Query Frame = -3
Query:  458 LPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYA 793
            LPIGKA+  R G DV + A+  +V L+ + A++L + G+ A V+N R  +PLD   I    +K  ++VT+EEG    G G+ +  ++++     + APV RI   D  + +A
Sbjct:  493 LPIGKAETLRHGDDVLLLAYGTMVNLASQVADMLTEHGVRATVVNARFAKPLDTELIIPLAQKIGQVVTLEEGCLPGGFGSAVLEALMDHQ---VMAPVTRIGVPDQLVEHA 601          
The following BLAST results are available for this feature:
BLAST of CV884337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
DXS_PELCD4.037e-1134.551-deoxy-D-xylulose-5-phosphate synthase OS=Pelobac... [more]
DXS_DESPS4.037e-1137.381-deoxy-D-xylulose-5-phosphate synthase OS=Desulfo... [more]
DXS_ACAM15.273e-1134.821-deoxy-D-xylulose-5-phosphate synthase OS=Acaryoc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002G06_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T7_G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884337 ID=CV884337; Name=CV884337; organism=Citrus sinensis; type=EST; length=858bp
CATCAATTTATTATTTCTGTAATCCCACATCACCTTCTCTTTTCTCACAG
TGACAATACAATTATCAAAAATCCGAAGAAAGAATTCAAACGACTCAGAT
TCACGCACCATTTAATGAAATATCATGGAACTGACAAAACTTGTAGCAGT
ACATTGATAATCAAACAATAAAACTCTGGTTTCTTGTTGATTTTCCACAT
TAACAAGAGAAAACTGAGCCACAAAATTTCCTGCTGTCATCAACAATCTC
CAATTATTTCATGATCAATTCCCCCAAAAAAGTGTTGAGAATGGGAAAAA
TGTACAATCCCTCTATTGTTCCAGGATCTGACAAAGCTTCAGGGCAGAAT
CAGTTCTTTTATGCTGCAGCAGCCATTGGCACAGATCTGTAGCATGCTCT
CTTGGCAGCTCGGACAATATCTTCAACCTGTGGGACAGCCATTCTCTCAA
GATTGGCTGCATATGGCATTGGAACATCAGCTCCAGCAATTCTCTCAACT
GGTGCATCAAGATAACTGAAGCTTTCCTCAATAACGGATGCACAGATTTC
GGCACCAACTCCATGCTGAGGGAACCCTTCTTCAACTGTTACCAGTCTGT
TAGTTTTTCTGACAGAAGCATTGATTGTGGATCTATCTAGTGGCCTAATT
GACCGCAGATTGATAACCTCAGCACTTATTCCTTCCTTTGCAAGTATCTC
AGCCGCCTTGAGTGAAAGGCCCACAATTTTTGAGAAAGCTGTAATGGTTA
CATCCTTTCCTTCTCTCTCAATTTTAGCTTTCCCAATTGGAAGGCAAAAA
CTGGAATCAAGAACTTCAGCTGATACCGGGAATGACTCACCATATAACAA
CTCATTTT
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