CV884314

Overview
NameCV884314
Unique NameCV884314
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length878
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884314 vs. ExPASy Swiss-Prot
Match: IF4EB_DANRE (Eukaryotic translation initiation factor 4E-1B OS=Danio rerio GN=eif4e1b PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 6.666e-33
Identity = 78/198 (39.39%), Postives = 111/198 (56.06%), Query Frame = 2
Query:  110 EPSKNSTAVMQQP---HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTS----WLYTLLAMIGEQF-DHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSD--TIGFIFHED--AKHDNRSKNRY 667
            E  K    ++++P   HPL++ W  WF   +   K   W  ++R I  F +VE+FW LYNNI  PSKL+ G D+  FK+ IEP WED     GG+W +   K    T     WL TLL +IGE F     +ICG+V+N+RA+ +KI+LWT NA N      IG+++KE L       IG+  H D   K ++ +KN++
Sbjct:   18 EKKKFEPNILKEPCMKHPLQNRWGLWF---YKNDKSKMWQDNLRLITKFDTVEDFWGLYNNIQLPSKLSSGCDYSMFKDGIEPMWEDRSNKCGGRWLITLAKQHRHTELDHFWLETLLCLIGEGFSSFSRDICGSVINIRAKGDKIALWTSNAENCETVTYIGRKYKESLGLPQKLVIGYQAHADTATKSNSITKNKF 212          
BLAST of CV884314 vs. ExPASy Swiss-Prot
Match: I4E1B_HUMAN (Eukaryotic translation initiation factor 4E type 1B OS=Homo sapiens GN=EIF4E1B PE=2 SV=3)

HSP 1 Score: 138.658 bits (348), Expect = 4.321e-32
Identity = 70/182 (38.46%), Postives = 107/182 (58.79%), Query Frame = 2
Query:  149 HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKS----DTSWLYTLLAMIGEQF-DHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYS--DTIGFIFHED--AKHDNRSKNRY 667
            HPL++ W  WF   F   +   W  ++  +    +VE+FW+LY++I   SKL+ G D+  FK+ I+P WED     GG+W V   K +     D  WL TLL +IGE F +H  E+CGAVVN+R + +KI++WT+ A N+A  + +G+ +KE L  S    IG+  H D   K ++ +KN++
Sbjct:   62 HPLQNRWALWF---FKNDRSRAWQDNLHLVTKVDTVEDFWALYSHIQLASKLSSGCDYALFKDGIQPMWEDSRNKRGGRWLVSLAKQQRHIELDRLWLETLLCLIGESFEEHSREVCGAVVNIRTKGDKIAVWTREAENQAGVLHVGRVYKERLGLSPKTIIGYQAHADTATKSNSLAKNKF 240          
BLAST of CV884314 vs. ExPASy Swiss-Prot
Match: IF4E3_CAEEL (Eukaryotic translation initiation factor 4E-3 OS=Caenorhabditis elegans GN=ife-3 PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.144e-31
Identity = 67/170 (39.41%), Postives = 101/170 (59.41%), Query Frame = 2
Query:  149 HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKS----DTSWLYTLLAMIGEQFD-HGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSDT--IGFIFHEDA 637
            HPL++ W  W+       +   W   ++ +  F +VE+FWSLYN+I     L  G+D+Y FK  I+P WED     GG+W V+  K +     D  WL  L+A++GEQFD +GD ICGAVVNVR + +K+SLWT++A+ +   + IG+  K+ L   DT  + +  H+D+
Sbjct:   32 HPLQNRWALWY---LKADRNKEWEDCLKMVSLFDTVEDFWSLYNHIQSAGGLNWGSDYYLFKEGIKPMWEDVNNVQGGRWLVVVDKQRRTQLLDHYWLELLMAIVGEQFDEYGDYICGAVVNVRQKGDKVSLWTRDATRDDVNLRIGQVLKQKLSIPDTEILRYEVHKDS 198          
BLAST of CV884314 vs. ExPASy Swiss-Prot
Match: IF4E2_HUMAN (Eukaryotic translation initiation factor 4E type 2 OS=Homo sapiens GN=EIF4E2 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 4.044e-30
Identity = 65/168 (38.69%), Postives = 102/168 (60.71%), Query Frame = 2
Query:  107 DEPSKNSTAVMQQP--HPLEHSWTFWFDN--PFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLD 598
            ++ S    AV+  P  HPL++++TFW+    P   +   ++  +++ I TF+SVE+FW  Y+++  P  L   +DF+ FK  I+P WED    NGGKW +   KG +   W   +LAM+GEQF  G+EICGAVV+VR +++ IS+W K AS++A    I    + +L+
Sbjct:   38 NQSSSKRKAVVPGPAEHPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQIGTFASVEQFWRFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDANKNGGKWIIRLRKGLASRCWENLILAMLGEQFMVGEEICGAVVSVRFQEDIISIWNKTASDQATTARIRDTLRRVLN 205          
BLAST of CV884314 vs. ExPASy Swiss-Prot
Match: IF4E1_CAEEL (Eukaryotic translation initiation factor 4E-1 OS=Caenorhabditis elegans GN=ife-1 PE=1 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 4.044e-30
Identity = 69/183 (37.70%), Postives = 105/183 (57.38%), Query Frame = 2
Query:  149 HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKS----DTSWLYTLLAMIGEQFDHG-DEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELL-----DYS----DTIGFIFHEDAKHDNRS 655
            +PL+ +WT+W+ N     +  +W   ++ +YTF++V EFW+LY+ I  PS L    D+  F++ I+P WE P  +NGG+W ++  KGK+    D  WL  L+A++GEQF    + ICG V NVR +  KIS+WTK+ +++   M IG   KE L     D+S    D I +  HE  +    S
Sbjct:   12 YPLKRNWTWWYLND---ERNKSWEDRLKKVYTFNTVSEFWALYDAIRPPSGLNALCDYNVFRDDIQPMWEVPENSNGGRWLIVIDKGKTPEMVDAIWLEILMALVGEQFGKDMESICGLVCNVRGKGSKISVWTKDCNDDETNMRIGVVLKEKLMAASKDHSKPLFDVIRYEDHESCQKKTSS 191          
BLAST of CV884314 vs. ExPASy Swiss-Prot
Match: IF4E2_MOUSE (Eukaryotic translation initiation factor 4E type 2 OS=Mus musculus GN=Eif4e2 PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 6.898e-30
Identity = 65/167 (38.92%), Postives = 101/167 (60.48%), Query Frame = 2
Query:  110 EPSKNSTAVMQQP--HPLEHSWTFWFDN--PFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLD 598
            + S    AV+  P  HPL++++TFW+    P   +   ++  +++ I TF+SVE+FW  Y+++  P  L   +DF+ FK  I+P WED    NGGKW +   KG +   W   +LAM+GEQF  G+EICGAVV+VR +++ IS+W K AS++A    I    + +L+
Sbjct:   39 QSSGKRKAVVPGPAEHPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQIGTFASVEQFWKFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDANKNGGKWIIRLRKGLASRCWENLILAMLGEQFMVGEEICGAVVSVRFQEDIISIWNKTASDQATTARIRDTLRRVLN 205          
BLAST of CV884314 vs. ExPASy Swiss-Prot
Match: I4E1B_MOUSE (Eukaryotic translation initiation factor 4E type 1B OS=Mus musculus GN=Eif4e1b PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 6.898e-30
Identity = 69/186 (37.10%), Postives = 107/186 (57.53%), Query Frame = 2
Query:  134 VMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKG----KSDTSWLYTLLAMIGEQF-DHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYS--DTIGFIFHED-AKHDNRSKNRY 667
            V+ + HPL++ W  WF   F   +   W  +++ +  F++VE+FW++Y++I   SKL+ G D+  FK  I P WED     GG+W +   K     + D  WL TLL ++G  F ++  E+CGAVVN+R +++KI+LWT  A ++A  M IG+ +KE L  S    IG+  H D A   N   N++
Sbjct:   60 VLSKLHPLQYRWVLWF---FKNDRSRAWQDNLQLVTKFNTVEDFWAVYSHIKLASKLSSGCDYALFKEGILPMWEDNRNKQGGRWLLSIDKQLRHFELDRLWLETLLCLVGNCFEEYSREVCGAVVNIRTKRDKIALWTSEAEDKAGVMQIGQIYKERLGISTKTIIGYQAHADTAAKSNNLANKF 242          
BLAST of CV884314 vs. ExPASy Swiss-Prot
Match: IF4E5_CAEEL (Eukaryotic translation initiation factor 4E-5 OS=Caenorhabditis elegans GN=ife-5 PE=1 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 1.177e-29
Identity = 66/154 (42.86%), Postives = 94/154 (61.04%), Query Frame = 2
Query:  149 HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKS----DTSWLYTLLAMIGEQFDHG-DEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELL 595
            +PL+ +W++WF N     + A+W   ++ +YTF++V EFW+ Y  I  PS L    D+  F++ I+PKWE P   +GG+W +I  KGK+    D  WL  LLA+IGEQF    + ICG V NVR +  KIS+WTKN +++   M IG   KE L
Sbjct:    9 YPLQRNWSWWFLND---DRNASWQDRLKKVYTFNTVPEFWAFYEAILPPSGLNDLCDYNVFRDDIQPKWEAPENWDGGRWLIIINKGKTPEVLDAVWLEILLALIGEQFGKDMESICGLVCNVRGQGSKISVWTKNCNDDDTNMRIGVVLKEKL 159          
BLAST of CV884314 vs. ExPASy Swiss-Prot
Match: IF4E2_CAEEL (Eukaryotic translation initiation factor 4E-2 OS=Caenorhabditis elegans GN=ife-2 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.007e-29
Identity = 65/174 (37.36%), Postives = 104/174 (59.77%), Query Frame = 2
Query:  107 DEPSKNSTAVMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKS----DTSWLYTLLAMIGEQF-DHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSDTI 613
            +EP      +    + L+ +WT+W+ N     +  +W   ++++ TFSSV EFW+L+++I  PS L   +D+  F++ IEP WE P   NGG+W +   KG++    DT W   L+AMIGEQF D  + +CG V NVR +  KIS+WT N++++ A + IG   K++L+ +  I
Sbjct:    3 EEPVAAPGTISHPVYKLKRNWTWWYLND---ERNKSWEERLKNVKTFSSVGEFWALHDSIKPPSGLNPPSDYNVFRDGIEPMWEVPQNQNGGRWLITIEKGRTPEIMDTIWTEILMAMIGEQFSDDIESLCGIVCNVRGKGSKISVWTTNSADDGANLRIGGVLKQVLNNASMI 173          
BLAST of CV884314 vs. ExPASy Swiss-Prot
Match: IF4E_ASHGO (Eukaryotic translation initiation factor 4E OS=Ashbya gossypii GN=TIF45 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.301e-28
Identity = 72/192 (37.50%), Postives = 103/192 (53.65%), Query Frame = 2
Query:   98 VGDDEPSK---NSTAVMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFP--KGKSDTSWLYTLLAMIGEQFDHGD-EICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKEL--LDYSDTIGFIFHEDAKHDN 649
            VGD+E  K     +      HPL   WT W+  P     ++ W   +R + +F++VEEFW++ N I  P +L + +D++ F+N I P+WED   + GGKW+  F       D  WL  LLA+IGE  D  + EI G V+NVR    KI LWTK+   +A    +G ++K +  LD SDT+ F  H  A   N
Sbjct:   15 VGDNEERKAVLTDSKDFDLKHPLNSKWTLWYTKPPVGDNES-WSDLLRPVTSFTTVEEFWAIQNAIPKPRELPLKSDYHLFRNDIRPEWEDEANSRGGKWSFQFKVRNPPIDDLWLRALLAVIGESIDEDEFEINGVVINVRRSGFKIGLWTKSV-RQAPLSKVGAKFKAVLQLDDSDTLEFFAHSSANDKN 204          
The following BLAST results are available for this feature:
BLAST of CV884314 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
IF4EB_DANRE6.666e-3339.39Eukaryotic translation initiation factor 4E-1B OS=... [more]
I4E1B_HUMAN4.321e-3238.46Eukaryotic translation initiation factor 4E type 1... [more]
IF4E3_CAEEL2.144e-3139.41Eukaryotic translation initiation factor 4E-3 OS=C... [more]
IF4E2_HUMAN4.044e-3038.69Eukaryotic translation initiation factor 4E type 2... [more]
IF4E1_CAEEL4.044e-3037.70Eukaryotic translation initiation factor 4E-1 OS=C... [more]
IF4E2_MOUSE6.898e-3038.92Eukaryotic translation initiation factor 4E type 2... [more]
I4E1B_MOUSE6.898e-3037.10Eukaryotic translation initiation factor 4E type 1... [more]
IF4E5_CAEEL1.177e-2942.86Eukaryotic translation initiation factor 4E-5 OS=C... [more]
IF4E2_CAEEL2.007e-2937.36Eukaryotic translation initiation factor 4E-2 OS=C... [more]
IF4E_ASHGO1.301e-2837.50Eukaryotic translation initiation factor 4E OS=Ash... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002F03_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T3_F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884314 ID=CV884314; Name=CV884314; organism=Citrus sinensis; type=EST; length=878bp
AATGGCTGGAGAGAGCGATAACCCAAGAACTGAAGACCAAACAAACACCA
AAAACCCTAACCCTAGCGAAGAAGAGGAGCTGGAGGAAGGCGAGATCGTT
GGCGACGATGAGCCCTCGAAGAATTCAACCGCCGTGATGCAACAGCCGCA
TCCTCTCGAACACTCTTGGACCTTCTGGTTCGATAACCCTTTTGCCAAAT
CAAAACAAGCCACGTGGGGTAGCTCCATGCGCTCCATCTACACCTTCTCC
TCCGTTGAAGAGTTCTGGAGCCTTTACAACAATATACATCATCCGAGCAA
GTTGGCTGTGGGAGCAGACTTTTATTGTTTCAAGAATAAGATTGAGCCAA
AATGGGAGGACCCAGTTTGTGCTAATGGCGGGAAGTGGACTGTCATCTTT
CCTAAAGGAAAATCTGATACTTCTTGGCTGTATACGTTGCTGGCAATGAT
TGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGAGCAGTTGTAAATG
TTAGAGCTAGGCAGGAAAAGATATCTCTGTGGACCAAGAATGCTTCAAAT
GAAGCTGCTCAGATGAGCATTGGGAAACAGTGGAAGGAGTTGCTTGATTA
TAGTGACACCATAGGGTTCATCTTTCATGAGGATGCAAAGCATGACAACA
GGTCAAAGAATCGCTACACAACATAAACTGTACAGAGTTTTGCAGTGTAG
TCCCAGGAAATGCATTGTATTTTCTGGATGACAGTAGGCTTGTTAGTTGT
TATAGAGCTCTGAAACATTTTGCCATTTCCTGTTTTCTGTACTAATACCC
TCTTAAAAGGTTCTTTAAAGCACTAGCTGATTTTACCTTTGCAATATATT
TGAAGTTTGTTTAAAAAAAAAAAAAAAA
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