CV884314

Overview
NameCV884314
Unique NameCV884314
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length878
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884314 vs. ExPASy Swiss-Prot
Match: IF4E_CANGA (Eukaryotic translation initiation factor 4E OS=Candida glabrata GN=TIF45 PE=3 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.699e-28
Identity = 71/179 (39.66%), Postives = 102/179 (56.98%), Query Frame = 2
Query:  149 HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWT--VIFPKGKSDTSWLYTLLAMIGEQFDHGD-EICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYS--DTIGFIFHEDAKHDNRSKNRYT 670
            HPL   WT W+  P A  K  +W   +R + +F SVEEFW++  NI  P +L + +D++ F+N I P+WED   A GGKW+  V     + D  WL TLLA+IGE  D  D +I G V+NVR    + +LWTK+   E    +IG ++K++L  +  DT+ F  H  A +D  S+   T
Sbjct:   33 HPLNTKWTLWYTKP-AVDKSESWSDLLRPVTSFQSVEEFWAIVQNIPEPHELPLKSDYHVFRNDIRPEWEDSANAKGGKWSFQVRGRGAEIDELWLRTLLAVIGETIDEEDSQINGVVLNVRKGGNRFALWTKSCDKEPLS-NIGARFKQVLKLADEDTLEFFPHSTA-NDRHSQPTIT 208          
BLAST of CV884314 vs. ExPASy Swiss-Prot
Match: IF4E1_SCHPO (Eukaryotic translation initiation factor 4E-1 OS=Schizosaccharomyces pombe GN=tif451 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.219e-28
Identity = 70/181 (38.67%), Postives = 102/181 (56.35%), Query Frame = 2
Query:  149 HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKS----DTSWLYTLLAMIGEQFD-HGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDY--SDTIGFIFHEDAKH--DNRSKNR 664
            HPL   WT WF  P     +  W    ++I TF+SVEEFW ++NNI+  S L + +D+  F+  + P+WED     GGKW     KG+     D  WL T+LA IGE  D  G E+ G V+N+R    ++++WTK+ +N    M IG ++K++L+   S+TI F  HED+      R+K R
Sbjct:   38 HPLARPWTLWFLMPPTPGLE--WNELQKNIITFNSVEEFWGIHNNINPASSLPIKSDYSFFREGVRPEWEDVHNKTGGKW-AFQNKGRGGNALDEMWLTTVLAAIGETLDPTGQEVMGVVINMRKGFYRLAVWTKSCNNREVLMEIGTRFKQVLNLPRSETIEFSAHEDSSKSGSTRAKTR 215          
BLAST of CV884314 vs. ExPASy Swiss-Prot
Match: IF4E2_SCHPO (Eukaryotic translation initiation factor 4E-2 OS=Schizosaccharomyces pombe GN=tif452 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.785e-28
Identity = 68/177 (38.42%), Postives = 98/177 (55.37%), Query Frame = 2
Query:  122 NSTAVMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFP-KGKS-DTSWLYTLLAMIGEQFD-HGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSD--TIGFIFHEDA 637
            N+     + HPL+H WT WF  P  +  +  W   ++ I +F +VEEFW ++  I   S L   +D+  F   I P+WEDP   NGGKW      KG + D  WLY +LA IGE  D  G E+ G V N+R    +I++WT+N +++     IG ++KE+L  SD  TI +  HED+
Sbjct:   55 NAETAFVKTHPLQHEWTLWFLKPPTQGLE--WSDLLKEIISFKTVEEFWGIFKTISKASMLPAKSDYSYFLKGIRPEWEDPQNMNGGKWAYQSKHKGSNLDELWLYMVLAAIGETLDPTGKEVTGVVCNMRKGFYRIAVWTRNCNDKDVLEKIGLRFKEVLGISDKETIEYSAHEDS 229          
BLAST of CV884314 vs. ExPASy Swiss-Prot
Match: IF4E_YEAST (Eukaryotic translation initiation factor 4E OS=Saccharomyces cerevisiae GN=TIF45 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.204e-27
Identity = 62/157 (39.49%), Postives = 93/157 (59.24%), Query Frame = 2
Query:  149 HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKS---DTSWLYTLLAMIGEQFDHGD-EICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSD 607
            HPL   WT W+  P A  K  +W   +R + +F +VEEFW++  NI  P +L + +D++ F+N + P+WED   A GGKW+    +GK    D  WL TLLA+IGE  D  D +I G V+++R    K +LWTK+   E   + IG ++K++L  +D
Sbjct:   37 HPLNTKWTLWYTKP-AVDKSESWSDLLRPVTSFQTVEEFWAIIQNIPEPHELPLKSDYHVFRNDVRPEWEDEANAKGGKWSFQL-RGKGADIDELWLRTLLAVIGETIDEDDSQINGVVLSIRKGGNKFALWTKSEDKEPL-LRIGGKFKQVLKLTD 190          
BLAST of CV884314 vs. ExPASy Swiss-Prot
Match: IF4E_CANAL (Eukaryotic translation initiation factor 4E OS=Candida albicans GN=TIF45 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.712e-26
Identity = 62/170 (36.47%), Postives = 101/170 (59.41%), Query Frame = 2
Query:  149 HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTS------WLYTLLAMIGEQF-DHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSD--TIGFIFHE 631
            HPL   WT W+  P   +K   W   ++ + TFSSVEEFW +YN+I   ++L + +D++ FK  I P+WED   + GGKW   F K KS+ +      WL  LLA+IGE   D  +E+ G V+N+R +  ++ +WTK+  +E+   ++G++ K++L  +D   + F+ H+
Sbjct:   30 HPLNSRWTLWYTKP-QTNKSENWHDLLKPVITFSSVEEFWGIYNSIPPANQLPLKSDYHLFKEGIRPEWEDEANSKGGKWQFSFNK-KSEVNPIINDLWLRGLLAVIGETIEDEENEVNGIVLNIRKQAYRVGIWTKDC-DESKLKTVGERLKKVLQLNDEQKVEFMSHD 196          
BLAST of CV884314 vs. ExPASy Swiss-Prot
Match: IF4E4_CAEEL (Eukaryotic translation initiation factor 4E-4 OS=Caenorhabditis elegans GN=ife-4 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 6.043e-26
Identity = 63/178 (35.39%), Postives = 100/178 (56.18%), Query Frame = 2
Query:  149 HPLEHSWTF-WFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLD--YSDTIGFIFHEDAKHDNRSKNRYTT 673
            H L++S+TF +F  P  K     + S ++ +    SVE+FWS+  +   P+++   AD + FK  ++P WEDP    GGKW +   KG S   W   L+A+IGEQF  GDE+CGAV ++R +++ ISLW +NA +      I +  + +L    +  + +  H+D   D +S  R+TT
Sbjct:   31 HQLQYSYTFSYFMRPTGKFDPEDYASYVQPVGIMKSVEQFWSIMVHFKRPTEMCDKADIHFFKTGVKPVWEDPANCKGGKWIIRLKKGLSTRIWENLLMAIIGEQFLVGDELCGAVCSIRNQEDIISLWNRNADDTPVTNRIRETLRSVLQLPQNTVLEYKRHDDCLRD-QSSYRHTT 207          
BLAST of CV884314 vs. ExPASy Swiss-Prot
Match: IF4E3_ARATH (Eukaryotic translation initiation factor 4E type 3 OS=Arabidopsis thaliana GN=At5g18110 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.488e-24
Identity = 59/181 (32.60%), Postives = 96/181 (53.04%), Query Frame = 2
Query:  119 KNSTAVMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKE--LLDYSDTIGFIFHEDAKHDNRS 655
            + S  +    HPL + ++ W+       +  ++  +++ +  FS+VE FW+ Y ++   S L    D + FK+ I P WED    NGGKW + F K  S   W   LLA++G+Q D  D ICGAV++VR  ++ IS+W +NAS+  A M +    K    L ++  + +  H+ +  DN S
Sbjct:   33 RRSRELKDGDHPLRYKFSIWYTRRTPGVRNQSYEDNIKKMVEFSTVEGFWACYCHLARSSLLPSPTDLHFFKDGIRPLWEDGANCNGGKWIIRFSKVVSARFWEDLLLALVGDQLDDADNICGAVLSVRFNEDIISVWNRNASDHQAVMGLRDSIKRHLKLPHAYVMEYKPHDASLRDNSS 213          
BLAST of CV884314 vs. ExPASy Swiss-Prot
Match: IF4E3_HUMAN (Eukaryotic translation initiation factor 4E type 3 OS=Homo sapiens GN=EIF4E3 PE=2 SV=4)

HSP 1 Score: 106.301 bits (264), Expect = 2.376e-22
Identity = 52/136 (38.24%), Postives = 74/136 (54.41%), Query Frame = 2
Query:  152 PLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDH----GDEICGAVVNVRARQEKISLWTKNAS 547
            PL  SWTFW D     +  A   S+++ IYT  +V+ FWS+YNNI   + L +   ++  + +  P WE+   A GG W +  PK  + T W   LLA IGEQF       DE+ G  V+VR R++ + +W  NAS
Sbjct:   48 PLHSSWTFWLDRSLPGATAAECASNLKKIYTVQTVQIFWSVYNNIPPVTSLPLRCSYHLMRGERRPLWEEESNAKGGVWKMKVPKDSTSTVWKELLLATIGEQFTDCAAADDEVIGVSVSVRDREDVVQVWNVNAS 183          
BLAST of CV884314 vs. ExPASy Swiss-Prot
Match: IF4E3_MOUSE (Eukaryotic translation initiation factor 4E type 3 OS=Mus musculus GN=Eif4e3 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.104e-22
Identity = 58/156 (37.18%), Postives = 83/156 (53.21%), Query Frame = 2
Query:  101 GDDEP-SKNSTAVMQQPH--PLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDH----GDEICGAVVNVRARQEKISLWTKNAS 547
            G +EP  K  +A+  +P   PL   WTFW D     +  A   S+++ IYT  +V+ FWS+YNNI   + L +   ++  + +  P WE+   A GG W +  PK  + T W   LLA IGEQF       DEI G  V+VR R++ + +W  NAS
Sbjct:   11 GANEPLDKALSALPPEPGGVPLHSPWTFWLDRSLPGATAAECASNLKKIYTVQTVQIFWSVYNNIPPVTSLPLRCSYHLMRGERRPLWEEESNAKGGVWKMKVPKDSTSTVWKELLLATIGEQFTDCAAADDEIIGVSVSVRDREDVVQVWNVNAS 166          
BLAST of CV884314 vs. ExPASy Swiss-Prot
Match: I4E3B_XENLA (Eukaryotic translation initiation factor 4E type 3-B OS=Xenopus laevis GN=eif4e3-B PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.540e-21
Identity = 53/136 (38.97%), Postives = 75/136 (55.15%), Query Frame = 2
Query:  152 PLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQF-DH---GDEICGAVVNVRARQEKISLWTKNAS 547
            PL   WTFW D     +  A   S+++ IYT  +++ FWS+YNNI   S L +   ++  + + +P WE+   A GG W +  PK  S   W   LLA IGEQF DH    DE+ G  V+VR R++ + +W  NAS
Sbjct:   42 PLNSPWTFWLDRSLPGTTAAECESNLKKIYTVHTIQSFWSVYNNIPLVSNLPLRWSYHLMRGERKPLWEEESNAKGGVWKMKVPKEASSLVWKELLLATIGEQFTDHCSPEDEVIGVSVSVRDREDVVQVWNGNAS 177          
The following BLAST results are available for this feature:
BLAST of CV884314 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
IF4E_CANGA1.699e-2839.66Eukaryotic translation initiation factor 4E OS=Can... [more]
IF4E1_SCHPO2.219e-2838.67Eukaryotic translation initiation factor 4E-1 OS=S... [more]
IF4E2_SCHPO3.785e-2838.42Eukaryotic translation initiation factor 4E-2 OS=S... [more]
IF4E_YEAST3.204e-2739.49Eukaryotic translation initiation factor 4E OS=Sac... [more]
IF4E_CANAL2.712e-2636.47Eukaryotic translation initiation factor 4E OS=Can... [more]
IF4E4_CAEEL6.043e-2635.39Eukaryotic translation initiation factor 4E-4 OS=C... [more]
IF4E3_ARATH1.488e-2432.60Eukaryotic translation initiation factor 4E type 3... [more]
IF4E3_HUMAN2.376e-2238.24Eukaryotic translation initiation factor 4E type 3... [more]
IF4E3_MOUSE3.104e-2237.18Eukaryotic translation initiation factor 4E type 3... [more]
I4E3B_XENLA1.540e-2138.97Eukaryotic translation initiation factor 4E type 3... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002F03_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T3_F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884314 ID=CV884314; Name=CV884314; organism=Citrus sinensis; type=EST; length=878bp
AATGGCTGGAGAGAGCGATAACCCAAGAACTGAAGACCAAACAAACACCA
AAAACCCTAACCCTAGCGAAGAAGAGGAGCTGGAGGAAGGCGAGATCGTT
GGCGACGATGAGCCCTCGAAGAATTCAACCGCCGTGATGCAACAGCCGCA
TCCTCTCGAACACTCTTGGACCTTCTGGTTCGATAACCCTTTTGCCAAAT
CAAAACAAGCCACGTGGGGTAGCTCCATGCGCTCCATCTACACCTTCTCC
TCCGTTGAAGAGTTCTGGAGCCTTTACAACAATATACATCATCCGAGCAA
GTTGGCTGTGGGAGCAGACTTTTATTGTTTCAAGAATAAGATTGAGCCAA
AATGGGAGGACCCAGTTTGTGCTAATGGCGGGAAGTGGACTGTCATCTTT
CCTAAAGGAAAATCTGATACTTCTTGGCTGTATACGTTGCTGGCAATGAT
TGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGAGCAGTTGTAAATG
TTAGAGCTAGGCAGGAAAAGATATCTCTGTGGACCAAGAATGCTTCAAAT
GAAGCTGCTCAGATGAGCATTGGGAAACAGTGGAAGGAGTTGCTTGATTA
TAGTGACACCATAGGGTTCATCTTTCATGAGGATGCAAAGCATGACAACA
GGTCAAAGAATCGCTACACAACATAAACTGTACAGAGTTTTGCAGTGTAG
TCCCAGGAAATGCATTGTATTTTCTGGATGACAGTAGGCTTGTTAGTTGT
TATAGAGCTCTGAAACATTTTGCCATTTCCTGTTTTCTGTACTAATACCC
TCTTAAAAGGTTCTTTAAAGCACTAGCTGATTTTACCTTTGCAATATATT
TGAAGTTTGTTTAAAAAAAAAAAAAAAA
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