CV884314

Overview
NameCV884314
Unique NameCV884314
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length878
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884314 vs. ExPASy Swiss-Prot
Match: IF4E3_XENTR (Eukaryotic translation initiation factor 4E type 3 OS=Xenopus tropicalis GN=eif4e3 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.481e-21
Identity = 53/147 (36.05%), Postives = 78/147 (53.06%), Query Frame = 2
Query:  131 AVMQQPH----PLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDH----GDEICGAVVNVRARQEKISLWTKNAS 547
            A+ Q+P     PL   WTFW D     +  A   S+++ IYT  +++ FWS+YNNI   + L +   ++  + + +P WE+   A GG W +  PK  S   W   LLA IGEQF       DE+ G  V+VR R++ + +W  NAS
Sbjct:   31 ALPQEPDTEGIPLHSPWTFWLDRSLPGTTAAECESNLKKIYTVHTIQSFWSVYNNIPQVTNLPLRWSYHLMRGERKPLWEEESNAKGGVWKMKVPKEASSLVWKELLLATIGEQFTDRCAPEDEVIGVSVSVRDREDVVQVWNGNAS 177          
BLAST of CV884314 vs. ExPASy Swiss-Prot
Match: I4E3A_XENLA (Eukaryotic translation initiation factor 4E type 3-A OS=Xenopus laevis GN=eif4e3-A PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.853e-21
Identity = 55/152 (36.18%), Postives = 82/152 (53.95%), Query Frame = 2
Query:  152 PLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDH----GDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELL 595
            PL   WTFW D     +  A   S+++ IYT  +++ FWS+YNNI   + L V   ++  + + +P WE+   A GG W +  PK  S   W   LLA IGEQF       DE+ G  V+VR R++ + +W  NAS   A+ ++ ++  ELL
Sbjct:   42 PLHSPWTFWLDRSLPGTTAAECESNLKKIYTVHTIQSFWSVYNNIPLVTNLPVRWSYHLMRGERKPLWEEESNAKGGVWKMKVPKEASSLVWKELLLATIGEQFTDRCAPEDEVIGVSVSVRDREDIVQVWNGNAS-VVAEATVLEKIYELL 192          
BLAST of CV884314 vs. ExPASy Swiss-Prot
Match: IF4E3_DANRE (Eukaryotic translation initiation factor 4E type 3 OS=Danio rerio GN=eif4e3 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.644e-21
Identity = 54/141 (38.30%), Postives = 75/141 (53.19%), Query Frame = 2
Query:  152 PLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFD----HGDEICGAVVNVRARQEKISLWTKNAS--NEA 556
            PL   WTFW D     +  A   S+++ IYT  +V+ FWS+YNNI   S L +   ++  + +  P WE+   A GG W +  PK  +   W   LLA IGEQF       DE+ G  V+VR R++ + +W  NAS  NEA
Sbjct:   48 PLHSPWTFWLDRSLPGTTAAECESNLKKIYTVHTVQSFWSVYNNIPPVSCLPLRCSYHLMRGERRPLWEEESNAKGGVWKMKVPKESTLAVWKELLLATIGEQFTDYCASEDEVVGVSVSVREREDVVQVWNGNASFANEA 188          
The following BLAST results are available for this feature:
BLAST of CV884314 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
IF4E3_XENTR4.481e-2136.05Eukaryotic translation initiation factor 4E type 3... [more]
I4E3A_XENLA5.853e-2136.18Eukaryotic translation initiation factor 4E type 3... [more]
IF4E3_DANRE7.644e-2138.30Eukaryotic translation initiation factor 4E type 3... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002F03_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T3_F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884314 ID=CV884314; Name=CV884314; organism=Citrus sinensis; type=EST; length=878bp
AATGGCTGGAGAGAGCGATAACCCAAGAACTGAAGACCAAACAAACACCA
AAAACCCTAACCCTAGCGAAGAAGAGGAGCTGGAGGAAGGCGAGATCGTT
GGCGACGATGAGCCCTCGAAGAATTCAACCGCCGTGATGCAACAGCCGCA
TCCTCTCGAACACTCTTGGACCTTCTGGTTCGATAACCCTTTTGCCAAAT
CAAAACAAGCCACGTGGGGTAGCTCCATGCGCTCCATCTACACCTTCTCC
TCCGTTGAAGAGTTCTGGAGCCTTTACAACAATATACATCATCCGAGCAA
GTTGGCTGTGGGAGCAGACTTTTATTGTTTCAAGAATAAGATTGAGCCAA
AATGGGAGGACCCAGTTTGTGCTAATGGCGGGAAGTGGACTGTCATCTTT
CCTAAAGGAAAATCTGATACTTCTTGGCTGTATACGTTGCTGGCAATGAT
TGGAGAACAGTTTGATCATGGAGATGAAATCTGTGGAGCAGTTGTAAATG
TTAGAGCTAGGCAGGAAAAGATATCTCTGTGGACCAAGAATGCTTCAAAT
GAAGCTGCTCAGATGAGCATTGGGAAACAGTGGAAGGAGTTGCTTGATTA
TAGTGACACCATAGGGTTCATCTTTCATGAGGATGCAAAGCATGACAACA
GGTCAAAGAATCGCTACACAACATAAACTGTACAGAGTTTTGCAGTGTAG
TCCCAGGAAATGCATTGTATTTTCTGGATGACAGTAGGCTTGTTAGTTGT
TATAGAGCTCTGAAACATTTTGCCATTTCCTGTTTTCTGTACTAATACCC
TCTTAAAAGGTTCTTTAAAGCACTAGCTGATTTTACCTTTGCAATATATT
TGAAGTTTGTTTAAAAAAAAAAAAAAAA
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