CV884298

Overview
NameCV884298
Unique NameCV884298
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length746
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884298 vs. ExPASy Swiss-Prot
Match: GRXC4_ORYSJ (Glutaredoxin-C4, chloroplastic OS=Oryza sativa subsp. japonica GN=GRXC4 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.494e-19
Identity = 44/90 (48.89%), Postives = 59/90 (65.56%), Query Frame = 1
Query:  229 EKTISSHKIVIFSKSYCPYCRRAKSVFKELNMAPHVVELDERDDGWNIQDALGEMVGQRTVPQVFINGKHIGGSDDTVEAYESGKLAQLL 498
            ++ ++S  +V+FSK+YCP+C R K +  EL  +   VELD   DG  +Q AL +  GQRTVP VFI GKHIGG DDT+  ++ G L  LL
Sbjct:   33 KEIVASSPVVVFSKTYCPFCARVKRLLAELAASYKAVELDVESDGSELQSALADWTGQRTVPCVFIKGKHIGGCDDTMAMHKGGNLVPLL 122          
BLAST of CV884298 vs. ExPASy Swiss-Prot
Match: GRXC2_ARATH (Glutaredoxin-C2 OS=Arabidopsis thaliana GN=GRXC2 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.371e-19
Identity = 44/90 (48.89%), Postives = 56/90 (62.22%), Query Frame = 1
Query:  229 EKTISSHKIVIFSKSYCPYCRRAKSVFKELNMAPHVVELDERDDGWNIQDALGEMVGQRTVPQVFINGKHIGGSDDTVEAYESGKLAQLL 498
            ++ ++S  +V+FSK+YCPYC R K + ++L      VELD   DG  IQ  L E  GQRTVP VFI G HIGG D T   ++ GKL  LL
Sbjct:    7 KEIVNSESVVVFSKTYCPYCVRVKELLQQLGAKFKAVELDTESDGSQIQSGLAEWTGQRTVPNVFIGGNHIGGCDATSNLHKDGKLVPLL 96          
BLAST of CV884298 vs. ExPASy Swiss-Prot
Match: GLRX2_BOVIN (Glutaredoxin-2, mitochondrial OS=Bos taurus GN=GLRX2 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.726e-18
Identity = 46/105 (43.81%), Postives = 71/105 (67.62%), Query Frame = 1
Query:  184 SFSGASAKSSEAAFVEKTISSHKIVIFSKSYCPYCRRAKSVFKELNMAPHVVELDERDDGWNIQDALGEMVGQRTVPQVFINGKHIGGSDDTVEAYESGKLAQLL 498
            S S  +A ++    +++TIS++ +VIFSK+ C YC  AK++F ++N+   VVELD  + G   QDAL +M G+RTVP++F+NG  IGG+ DT   ++ GKL  L+
Sbjct:   40 SSSLGNAATAPVNQIQETISNNCVVIFSKTSCSYCTMAKNLFHDMNVNYKVVELDMLEYGSQFQDALHKMTGERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLV 144          
BLAST of CV884298 vs. ExPASy Swiss-Prot
Match: GRS10_ORYSJ (Monothiol glutaredoxin-S10 OS=Oryza sativa subsp. japonica GN=GRXS10 PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 3.561e-18
Identity = 46/109 (42.20%), Postives = 70/109 (64.22%), Query Frame = 1
Query:  196 ASAKSSEAAF-------VEKTISSHKIVIFSKSYCPYCRRAKSVFKELNMAPHVVELDERD-DGWNIQDALGEMVGQRTVPQVFINGKHIGGSDDTVEAYESGKLAQLL 498
            AS+ S +++F       V++T++ + +VI+SKS+C Y    K++FK + + PHV+ELD+    G  +Q  L  + GQ TVP VFI GKHIGG  DTV+ +  G+LA +L
Sbjct:   46 ASSSSPDSSFGSRMEDSVKRTLADNPVVIYSKSWCSYSMEVKALFKRIGVQPHVIELDQLGAQGPQLQKVLERLTGQSTVPNVFIGGKHIGGCTDTVKLHRKGELATML 154          
BLAST of CV884298 vs. ExPASy Swiss-Prot
Match: GLRX2_RAT (Glutaredoxin-2, mitochondrial OS=Rattus norvegicus GN=Glrx2 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 4.651e-18
Identity = 48/106 (45.28%), Postives = 72/106 (67.92%), Query Frame = 1
Query:  181 ASFSGASAKSSEAAFVEKTISSHKIVIFSKSYCPYCRRAKSVFKELNMAPHVVELDERDDGWNIQDALGEMVGQRTVPQVFINGKHIGGSDDTVEAYESGKLAQLL 498
            +SF G SA ++    +++TIS++ +VIFSKS C YC  AK +F ++N+   VVELD  + G   Q+AL +M G+RTVP++F+NG  IGG+ DT   ++ GKL  L+
Sbjct:   39 SSFWGKSA-TTPVNQIQETISNNCVVIFSKSSCSYCSMAKKIFHDMNVNYKVVELDMVEYGSQFQEALYKMTGERTVPRIFVNGIFIGGAADTHRLHKEGKLLPLV 143          
BLAST of CV884298 vs. ExPASy Swiss-Prot
Match: TRXR3_MOUSE (Thioredoxin reductase 3 (Fragment) OS=Mus musculus GN=Txnrd3 PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 6.074e-18
Identity = 44/107 (41.12%), Postives = 69/107 (64.49%), Query Frame = 1
Query:  193 GASAKSSEAAF-----VEKTISSHKIVIFSKSYCPYCRRAKSVFKELNMAPHVVELDERDDGWNIQDALGEMVGQRTVPQVFINGKHIGGSDDTVEAYESGKLAQLL 498
            G S  SSEA       +   I  ++++IFSKSYCP+  R K +F  L +  +++ELD+ DDG ++Q+ L E+  Q+TVP +F+N  H+GG D T +A+++G L +LL
Sbjct:   97 GTSRPSSEAREELRRRLRDLIEGNRVMIFSKSYCPHSTRVKELFSSLGVVYNILELDQVDDGASVQEVLTEISNQKTVPNIFVNKVHVGGCDRTFQAHQNGLLQKLL 203          
BLAST of CV884298 vs. ExPASy Swiss-Prot
Match: GLRX2_MOUSE (Glutaredoxin-2, mitochondrial OS=Mus musculus GN=Glrx2 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.074e-18
Identity = 46/106 (43.40%), Postives = 71/106 (66.98%), Query Frame = 1
Query:  181 ASFSGASAKSSEAAFVEKTISSHKIVIFSKSYCPYCRRAKSVFKELNMAPHVVELDERDDGWNIQDALGEMVGQRTVPQVFINGKHIGGSDDTVEAYESGKLAQLL 498
            +SF G S  ++    +++TIS++ +VIFSK+ C YC  AK +F ++N+    VELD  + G   QDAL +M G+RTVP++F+NG+ IGG+ DT   ++ GKL  L+
Sbjct:   39 SSFWGKST-TTPVNQIQETISNNCVVIFSKTSCSYCSMAKKIFHDMNVNYKAVELDMLEYGNQFQDALHKMTGERTVPRIFVNGRFIGGAADTHRLHKEGKLLPLV 143          
BLAST of CV884298 vs. ExPASy Swiss-Prot
Match: GLRX2_YEAST (Glutaredoxin-2, mitochondrial OS=Saccharomyces cerevisiae GN=GRX2 PE=1 SV=3)

HSP 1 Score: 90.8929 bits (224), Expect = 7.933e-18
Identity = 52/126 (41.27%), Postives = 77/126 (61.11%), Query Frame = 1
Query:  136 MISVLTLAIATLLFWASFSGASAKSSEA-AFVEKTISSHKIVIFSKSYCPYCRRAKS-VFKELNMAPH---VVELDERDDGWNIQDALGEMVGQRTVPQVFINGKHIGGSDDTVEAYESGKLAQLL 498
            +I ++TL    ++     S     S E  A V+  I   ++ + +K+YCPYC+   S +F+ELN+      V+ELDE  +G  IQDAL E+ GQ+TVP V+INGKHIGG+ D     ++GKLA++L
Sbjct:   13 VIIIITLFATRIIAKRFLSTPKMVSQETVAHVKDLIGQKEVFVAAKTYCPYCKATLSTLFQELNVPKSKALVLELDEMSNGSEIQDALEEISGQKTVPNVYINGKHIGGNSDLETLKKNGKLAEIL 138          
BLAST of CV884298 vs. ExPASy Swiss-Prot
Match: GRS12_ARATH (Monothiol glutaredoxin-S12, chloroplastic OS=Arabidopsis thaliana GN=GRXS12 PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 1.036e-17
Identity = 47/113 (41.59%), Postives = 74/113 (65.49%), Query Frame = 1
Query:  184 SFSGASAKSSEAAFVEKTISSHKIVIFSKSYCPYCRRAKSVFKELNMAPHVVELDER-DDGWNIQDALGEMVGQRTVPQVFINGKHIGGSDDTVEAYESGKLAQLLGIAASGK 519
            S S +S+ S+    V+ T++ + +V++SK++C Y  + KS+FK L + P VVELD+   +G  +Q+ L ++ GQ TVP VFI GKHIGG  DT++ +  G+L  +L   A+GK
Sbjct:   64 SSSSSSSGSTLEETVKTTVAENPVVVYSKTWCSYSSQVKSLFKSLQVEPLVVELDQLGSEGSQLQNVLEKITGQYTVPNVFIGGKHIGGCSDTLQLHNKGELEAILA-EANGK 175          
BLAST of CV884298 vs. ExPASy Swiss-Prot
Match: GLRX2_HUMAN (Glutaredoxin-2, mitochondrial OS=Homo sapiens GN=GLRX2 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.767e-17
Identity = 43/91 (47.25%), Postives = 63/91 (69.23%), Query Frame = 1
Query:  226 VEKTISSHKIVIFSKSYCPYCRRAKSVFKELNMAPHVVELDERDDGWNIQDALGEMVGQRTVPQVFINGKHIGGSDDTVEAYESGKLAQLL 498
            +++TIS + +VIFSK+ C YC  AK +F ++N+   VVELD  + G   QDAL +M G+RTVP++F+NG  IGG+ DT   ++ GKL  L+
Sbjct:   60 IQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTGERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLV 150          
The following BLAST results are available for this feature:
BLAST of CV884298 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
GRXC4_ORYSJ5.494e-1948.89Glutaredoxin-C4, chloroplastic OS=Oryza sativa sub... [more]
GRXC2_ARATH9.371e-1948.89Glutaredoxin-C2 OS=Arabidopsis thaliana GN=GRXC2 P... [more]
GLRX2_BOVIN2.726e-1843.81Glutaredoxin-2, mitochondrial OS=Bos taurus GN=GLR... [more]
GRS10_ORYSJ3.561e-1842.20Monothiol glutaredoxin-S10 OS=Oryza sativa subsp. ... [more]
GLRX2_RAT4.651e-1845.28Glutaredoxin-2, mitochondrial OS=Rattus norvegicus... [more]
TRXR3_MOUSE6.074e-1841.12Thioredoxin reductase 3 (Fragment) OS=Mus musculus... [more]
GLRX2_MOUSE6.074e-1843.40Glutaredoxin-2, mitochondrial OS=Mus musculus GN=G... [more]
GLRX2_YEAST7.933e-1841.27Glutaredoxin-2, mitochondrial OS=Saccharomyces cer... [more]
GRS12_ARATH1.036e-1741.59Monothiol glutaredoxin-S12, chloroplastic OS=Arabi... [more]
GLRX2_HUMAN1.767e-1747.25Glutaredoxin-2, mitochondrial OS=Homo sapiens GN=G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002E05_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T3_E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884298 ID=CV884298; Name=CV884298; organism=Citrus sinensis; type=EST; length=746bp
GACGTTATAATGAGAATTTATGCGCTAATAGGCATTTACAAAAACATCTA
AAAACCAACTCCGCTGCCTGCACCTCTTCTGCGCGGTCTCCGGTGCAGCA
TCAGACTCATCATGACGGCGAGAAGACTAACACCAATGATCTCAGTACTA
ACGTTAGCGATTGCGACGCTTCTCTTCTGGGCATCATTTTCCGGAGCTTC
TGCCAAATCTTCAGAAGCTGCTTTTGTCGAAAAGACTATCTCTTCCCACA
AGATCGTCATCTTCTCCAAGTCTTATTGCCCATATTGTAGGAGGGCTAAA
TCTGTATTCAAAGAGTTGAACATGGCTCCTCATGTAGTCGAGCTTGATGA
GAGAGATGATGGCTGGAACATTCAGGATGCCTTGGGTGAGATGGTTGGGC
AGCGCACTGTACCACAGGTGTTCATAAATGGAAAGCACATTGGAGGCTCA
GATGATACTGTTGAAGCATATGAAAGTGGGAAACTAGCTCAGCTTTTAGG
TATTGCAGCAAGTGGCAAAGATGATCTCTAATTGCTTCGAGATCAATGCC
AATTGGGGATCTGTCTAAAGCTTCGATGCACTGCCCTGAAGAATGAGGAT
GATCTCTGAGGCAATAATAGGATTTCTATTATTAGTATTCAGGGTAAGTA
CTTGTTGTGTAACTCTTTGTTTTACCTGGAAGTCAATTAGGGATATACAT
TAATCATAATAAGTAAGTCATCGTTATCAAATTTTAACCAAAAAAA
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