EY665257

Overview
NameEY665257
Unique NameEY665257
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length943
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665257 vs. ExPASy Swiss-Prot
Match: PABP1_BOVIN (Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.914e-14
Identity = 37/82 (45.12%), Postives = 62/82 (75.61%), Query Frame = 2
Query:   80 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLDMDHTEVLHLLESPEALKTKSTEAMEVLMIVALRQAS 325
            P+TA  + LA+A P++Q+ +LGE L+PL++ +    A K+TGMLL++D++E+LH+LESPE+L++K  EA+ VL     ++A+
Sbjct:  544 PLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAA 623          
BLAST of EY665257 vs. ExPASy Swiss-Prot
Match: PABP_USTMA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago maydis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.317e-13
Identity = 44/87 (50.57%), Postives = 58/87 (66.67%), Query Frame = 2
Query:   38 AGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLDMDHTEVLHLLESPEALKTKSTEAMEVL 298
            AG P  D    QP  +TA   ALA ASPE+Q+ +LGE++YP V   + + A K+TGM+L++  TE+LHLLE  EAL  K  EA+EVL
Sbjct:  547 AGRPEAD----QPGALTA--AALAKASPEEQKQMLGEAIYPKVAASQPELAGKLTGMILELPVTELLHLLEESEALDAKVNEALEVL 627          
BLAST of EY665257 vs. ExPASy Swiss-Prot
Match: PABPB_XENLA (Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-B PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.317e-13
Identity = 37/82 (45.12%), Postives = 61/82 (74.39%), Query Frame = 2
Query:   80 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLDMDHTEVLHLLESPEALKTKSTEAMEVLMIVALRQAS 325
            P+TA  + LA A P++Q+ +LGE L+PL++ +    A K+TGMLL++D++E+LH+LESPE+L++K  EA+ VL     ++A+
Sbjct:  542 PLTA--SMLAAAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAA 621          
BLAST of EY665257 vs. ExPASy Swiss-Prot
Match: PABPA_XENLA (Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-A PE=1 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 1.317e-13
Identity = 37/82 (45.12%), Postives = 61/82 (74.39%), Query Frame = 2
Query:   80 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLDMDHTEVLHLLESPEALKTKSTEAMEVLMIVALRQAS 325
            P+TA  + LA A P++Q+ +LGE L+PL++ +    A K+TGMLL++D++E+LH+LESPE+L++K  EA+ VL     ++A+
Sbjct:  542 PLTA--SMLAAAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAA 621          
BLAST of EY665257 vs. ExPASy Swiss-Prot
Match: PABP4_HUMAN (Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.317e-13
Identity = 36/73 (49.32%), Postives = 58/73 (79.45%), Query Frame = 2
Query:   80 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLDMDHTEVLHLLESPEALKTKSTEAMEVL 298
            P+TA  + LA A P++Q+ +LGE L+PL++ +  + A K+TGMLL++D++E+LH+LESPE+L++K  EA+ VL
Sbjct:  553 PLTA--SMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVL 623          
BLAST of EY665257 vs. ExPASy Swiss-Prot
Match: PABP_CRYNE (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Cryptococcus neoformans GN=PAB1 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.721e-13
Identity = 40/93 (43.01%), Postives = 58/93 (62.37%), Query Frame = 2
Query:   26 VDMGAGIPRRDASVGQPMPITALSTA--LANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLDMDHTEVLHLLESPEALKTKSTEAMEVL 298
            +  G  +P R      P P      A  LA A+P +Q+ +LGE+LYPL+ + + + A K+TGMLL+MD+ E+LHL+ES  AL+ K  EA+ VL
Sbjct:  549 IPRGGQMPARPHEQAAPAPQAGRLDAQSLARAAPAEQKQMLGEALYPLIHETQPELAGKITGMLLEMDNAELLHLVESQPALQEKVDEALRVL 641          
BLAST of EY665257 vs. ExPASy Swiss-Prot
Match: EPABA_XENLA (Embryonic polyadenylate-binding protein A OS=Xenopus laevis GN=epabp-A PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 2.247e-13
Identity = 37/87 (42.53%), Postives = 61/87 (70.11%), Query Frame = 2
Query:   80 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLDMDHTEVLHLLESPEALKTKSTEAMEVLMIVALRQASYPSDQ 340
            P+TA  + LA A P++Q+ +LGE +YP++ ++    A K+TGMLL++D++E+LH+LESPE+L +K  EA+ VL     ++ +  S Q
Sbjct:  541 PLTA--SLLAGAPPQEQKQMLGERIYPVIHEMHPTLAGKITGMLLEIDNSELLHMLESPESLHSKVEEAVAVLQAHQAKENAQKSAQ 625          
BLAST of EY665257 vs. ExPASy Swiss-Prot
Match: PABP3_HUMAN (Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 5.007e-13
Identity = 34/80 (42.50%), Postives = 60/80 (75.00%), Query Frame = 2
Query:   86 TALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLDMDHTEVLHLLESPEALKTKSTEAMEVLMIVALRQAS 325
            T  ++ LA+A P++Q+ +LGE L+PL++ +    A K+TGMLL++D++E+L++LESPE+L++K  EA+ VL     ++A+
Sbjct:  539 TLTASRLASAPPQKQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLYMLESPESLRSKVDEAVAVLQAHQAKEAT 618          
BLAST of EY665257 vs. ExPASy Swiss-Prot
Match: EPABB_XENLA (Embryonic polyadenylate-binding protein B OS=Xenopus laevis GN=epabp-B PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.238e-12
Identity = 35/73 (47.95%), Postives = 55/73 (75.34%), Query Frame = 2
Query:   80 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLDMDHTEVLHLLESPEALKTKSTEAMEVL 298
            P+TA  + LA A  ++Q+ +LGE +YPL+ ++    A K+TGMLL++D++E+LH+LESPE+L +K  EA+ VL
Sbjct:  541 PLTA--SLLAAAPLQEQKQILGERIYPLIHEMHPTLAGKITGMLLEIDNSELLHMLESPESLHSKVEEAVAVL 611          
BLAST of EY665257 vs. ExPASy Swiss-Prot
Match: PABP_ASPOR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus oryzae GN=pab1 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 7.229e-12
Identity = 39/90 (43.33%), Postives = 56/90 (62.22%), Query Frame = 2
Query:   35 GAGIPRRDASVGQPMPITA---LSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLDMDHTEVLHLLESPEALKTKSTEAMEV 295
            G G     A  G+P    A    + AL+ A P QQ+ +LGE+LYP ++  + + A K+TGMLL+M++TE+L LLE  EAL+ K  EA+ V
Sbjct:  641 GRGQNAAQAPAGRPEEAVAGGLTAQALSAAPPPQQKQMLGEALYPKIQAQQPELAGKITGMLLEMENTELLSLLEDEEALRAKVDEALNV 730          
The following BLAST results are available for this feature:
BLAST of EY665257 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
PABP1_BOVIN5.914e-1445.12Polyadenylate-binding protein 1 OS=Bos taurus GN=P... [more]
PABP_USTMA1.317e-1350.57Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABPB_XENLA1.317e-1345.12Polyadenylate-binding protein 1-B OS=Xenopus laevi... [more]
PABPA_XENLA1.317e-1345.12Polyadenylate-binding protein 1-A OS=Xenopus laevi... [more]
PABP4_HUMAN1.317e-1349.32Polyadenylate-binding protein 4 OS=Homo sapiens GN... [more]
PABP_CRYNE1.721e-1343.01Polyadenylate-binding protein, cytoplasmic and nuc... [more]
EPABA_XENLA2.247e-1342.53Embryonic polyadenylate-binding protein A OS=Xenop... [more]
PABP3_HUMAN5.007e-1342.50Polyadenylate-binding protein 3 OS=Homo sapiens GN... [more]
EPABB_XENLA4.238e-1247.95Embryonic polyadenylate-binding protein B OS=Xenop... [more]
PABP_ASPOR7.229e-1243.33Polyadenylate-binding protein, cytoplasmic and nuc... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-083-H01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665257 ID=EY665257; Name=EY665257; organism=Citrus sinensis; type=EST; length=943bp
GCTGGCGGTATGCTCCCTGTTCCTCGTTGACATGGGCGCTGGCATACCTC
GGCGAGATGCATCTGTTGGACAACCTATGCCGATAACGGCTTTGTCTACT
GCTCTTGCAAATGCATCACCAGAACAGCAAAGGACGCTGCTGGGTGAAAG
TTTATATCCTCTAGTGGAGCAGCTGGAGCGAGATGCAGCGGCTAAAGTAA
CGGGAATGCTCTTGGATATGGACCACACAGAGGTTTTGCATCTTCTTGAG
TCACCAGAGGCTTTGAAGACTAAAAGTACTGAGGCAATGGAGGTTTTGAT
GATTGTTGCTCTTCGGCAAGCTAGTTATCCGTCTGATCAACTGGGTACAT
TGTCCCAGGATTGAAATCCTTGTATCCTGAACCCTTTGCTGACATTTGAA
CAAACTTAGAATATTTTGTGGATTTCAAAAAAATACAACATCAGATATAA
GAATAAATGAAGAAGTAGATGAAATCGGTTTCTCACAGATTCACTTAAGA
GAATCGTGAAAAACCTATATGAAATATTATAGTAATAAATAAAAGTTAAA
GACATGATGTAGTAGAAGAAATATGCAAGATAGAGAAATACGAAGGAAAT
CAACTACTGACACTTAGGACCATCTCACTACAAAGCGCACCGTGGGTTGG
ACGAAAAACCGACGCAGAATAAAAATGTAGTGATACGGTAGCAGTGTCTA
GTCCTGCGATACAAACAACACAACTAGTCGAATCCGATAACATATATTAC
TGGATAAGGATACTTCTTTACGTGACGTTAAAAATCAGACAAATCAAAGA
AAAATATGACAAGTGATATCAGGAGACAACAAAAATTATAAGGAACAGGA
TACAGATATAGTATAAGCAAATCGAAAAAAGATAAAATAACTTATCAGTA
CGTCAGACTGAGAGAGTCTATTACCATCTAAAACATTCTACAA
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