CV884225

Overview
NameCV884225
Unique NameCV884225
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length525
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig821 contig Csv1_Contig821:146..670. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CV884225 vs. ExPASy Swiss-Prot
Match: H4_OLILU (Histone H4 OS=Olisthodiscus luteus PE=1 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 8.419e-37
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = -3 
Query:  164 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 397
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CV884225 vs. ExPASy Swiss-Prot
Match: H4_SOLLC (Histone H4 OS=Solanum lycopersicum PE=3 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 1.436e-36
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = -3 
Query:  164 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 397
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CV884225 vs. ExPASy Swiss-Prot
Match: H4_SOLCH (Histone H4 OS=Solanum chacoense PE=3 SV=3)

HSP 1 Score: 152.14 bits (383), Expect = 1.436e-36
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = -3 
Query:  164 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 397
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CV884225 vs. ExPASy Swiss-Prot
Match: H4_CAPAN (Histone H4 OS=Capsicum annuum PE=3 SV=3)

HSP 1 Score: 152.14 bits (383), Expect = 1.436e-36
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = -3 
Query:  164 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 397
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CV884225 vs. ExPASy Swiss-Prot
Match: H4_XENTR (Histone H4 OS=Xenopus tropicalis GN=TGas006m08.1 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.875e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = -3 
Query:  164 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 397
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CV884225 vs. ExPASy Swiss-Prot
Match: H4_XENLA (Histone H4 OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 1.875e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = -3 
Query:  164 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 397
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CV884225 vs. ExPASy Swiss-Prot
Match: H4_XENBO (Histone H4 OS=Xenopus borealis PE=3 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 1.875e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = -3 
Query:  164 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 397
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CV884225 vs. ExPASy Swiss-Prot
Match: H4_URECA (Histone H4 OS=Urechis caupo PE=3 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 1.875e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = -3 
Query:  164 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 397
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CV884225 vs. ExPASy Swiss-Prot
Match: H4_TIGCA (Histone H4 OS=Tigriopus californicus GN=His4 PE=3 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 1.875e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = -3 
Query:  164 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 397
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CV884225 vs. ExPASy Swiss-Prot
Match: H4_RHYAM (Histone H4 OS=Rhynchosciara americana GN=His4 PE=3 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 1.875e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = -3 
Query:  164 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 397
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
The following BLAST results are available for this feature:
BLAST of CV884225 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
H4_OLILU8.419e-3798.72Histone H4 OS=Olisthodiscus luteus PE=1 SV=2[more]
H4_SOLLC1.436e-3698.72Histone H4 OS=Solanum lycopersicum PE=3 SV=2[more]
H4_SOLCH1.436e-3698.72Histone H4 OS=Solanum chacoense PE=3 SV=3[more]
H4_CAPAN1.436e-3698.72Histone H4 OS=Capsicum annuum PE=3 SV=3[more]
H4_XENTR1.875e-3697.44Histone H4 OS=Xenopus tropicalis GN=TGas006m08.1 P... [more]
H4_XENLA1.875e-3697.44Histone H4 OS=Xenopus laevis PE=1 SV=2[more]
H4_XENBO1.875e-3697.44Histone H4 OS=Xenopus borealis PE=3 SV=2[more]
H4_URECA1.875e-3697.44Histone H4 OS=Urechis caupo PE=3 SV=2[more]
H4_TIGCA1.875e-3697.44Histone H4 OS=Tigriopus californicus GN=His4 PE=3 ... [more]
H4_RHYAM1.875e-3697.44Histone H4 OS=Rhynchosciara americana GN=His4 PE=3... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002A12_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T7_A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884225 ID=CV884225; Name=CV884225; organism=Citrus sinensis; type=EST; length=525bp
GTTCTATATTGCCTCAATATAAAGATAAGATTTAACTTGATAGAATTACA
AAGCAGCAACCTAATAACAAACTACTAAGAGCCCCATCTACCAGATCAAG
ATCTAGAGTCAAGATCTATTAACATTTAATTCCAGAACCCTAAGACAATT
AACCCCCAAATCCATAAAGAGTCCTGCCCTGCCTCTTGAGAGCGTAAACG
ACGTCCATCGCGGTCACGGTCTTTCTCCTGGCGTGCTCAGTGTAGGTCAC
GGCGTCACGGATGACGTTCTCCAAGAATATCTTCAGGACGCCACGTGTCT
CCTCGTAGATCAAGCCGCTGATACGCTTGACTCCACCTCTACGAGCCAAA
CGCCGGATTGCCGGCTTTGTGATACCCTGAATGTTATCGCGAAGCACCTT
ACGGTGACGCTTGGCGCCTCCCTTTCCCAATCCCTTGCCTCCCTTACCGC
GCCCAGACATTTTAGCGAGGAACTTAAAAGACTTTCCGCTGTTCCTCGAA
AGAGAATTTGGATAGAGAAATTCCT
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