CV884217

Overview
NameCV884217
Unique NameCV884217
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length920
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CV884217 vs. ExPASy Swiss-Prot
Match: UBC2_MEDSA (Ubiquitin-conjugating enzyme E2 2 OS=Medicago sativa GN=UBC2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.668e-11
Identity = 46/144 (31.94%), Postives = 72/144 (50.00%), Query Frame = -3 
Query:  460 KRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEP-GWESMDSMEEGERQSN 888
            KR+  ++K L++D P  I     ++ + L  AVI G + TP+  G F   + F  DYPN PP V + S     +PN+Y  G +CL +L         +W P +  +  +L SIQ+L+ +  P  N P   E+     E +R+ N
Sbjct:    7 KRLMRDFKRLQHDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVS--RMFHPNIYADGSICLDIL-------QNQWSP-IYDVAAILTSIQSLLCDPNP--NSPANSEAARMFSENKREYN 138
The following BLAST results are available for this feature:
BLAST of CV884217 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
UBC2_MEDSA7.668e-1131.94Ubiquitin-conjugating enzyme E2 2 OS=Medicago sati... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002A08_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T7_A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884217 ID=CV884217; Name=CV884217; organism=Citrus sinensis; type=EST; length=920bp
GGATATAAAAACTTATGAATGTCTTAATTATATAACACTAAGTGTCAAAT
TTCTAAGTTAGAATTAAGAATGAAATCCTCTGTTCCCAGACTCAGGCTCA
TTCCCAGACTCAGGCTCATTACCAACTCCAGGCACCTCTGCTTTTGCTTG
AGTTAGGAAATTCTCGCAGTCCTTAACTCCGATATATGTAAATTCTTTTA
TGAGAAGATCACAATGCCCAGCTATGGAGGCCTTAAAATCCGGTGAGCAG
CTCTTTTTGCCCTTGTGAATTTTCTGCACACGACCTTTGACCAGAGAACC
CACTTCAGCACCATCCATGTATGCTTTACATGCAGCCAGAATATCATGTG
CACGCTGGTAAAAGTGGCCACTAACAAAATCATTGAAATGCTTTGGAGGT
CTCCTGACAGTGTACAGCATTGTCTTCAGTGACAAGATAAATGCACGCTC
ATTGTACATATTGGACTGTCTTTCACCTTCTTCCATGCTGTCCATACTTT
CCCAACCAGGTTCGTTAAAGTAAGGCCTTTCATTCAAGATCAGTGCTTGT
ATAGAGACCAAAACTTGTAGCATGGTTGACATAGAAGGGATCCACTTCTC
ATTCTTATCACCATCCCAGGTGTTAAGAAGACTAAGGCATACCTTCCCAC
AATTATATAAATTTGGATTGAGTCGAAGGCCACCGGAGTGGTAGTGGACA
TTCGGAGGTACATTAGGATAATCACTAGGGAAGAAAACATCAAAGAAGAA
CAGGCCATCATGGTAGGGAGTTCCCTCTGCCCCTACAATTACGGCCCTCA
AAAGATCCATCCTTGATTCATAAACCCTCACAAAAATTGTATCTGGCAAA
TCATTTTCCAGGATTTTCCACTCTTCCTGAATTCGCTTCACCAATTTATT
TGATGGCTGCTCCAATGATG
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