CV884212
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV884212 vs. ExPASy Swiss-Prot
Match: RAB5A_BOVIN (Ras-related protein Rab-5A OS=Bos taurus GN=RAB5A PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 5.922e-12 Identity = 39/113 (34.51%), Postives = 64/113 (56.64%), Query Frame = -2 Query: 447 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 776 ++F WDTAGQE++ L YY Q AI+++D+T ++ W ++L R NI I L GNK D+ N++ Q ++ +L + E SAK++ N + F+ +A+KL Sbjct: 69 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 181
BLAST of CV884212 vs. ExPASy Swiss-Prot
Match: RAB37_HUMAN (Ras-related protein Rab-37 OS=Homo sapiens GN=RAB37 PE=1 SV=3) HSP 1 Score: 71.633 bits (174), Expect = 5.922e-12 Identity = 36/130 (27.69%), Postives = 71/130 (54.62%), Query Frame = -2 Query: 447 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 827 T+G++ + +++ WDTAGQE+F + YY Q ++++D+T + ++ N+ W ++ + ++ I+L GNK D+ + +V + T R+ + + E SAK+ N E FL +A++L Sbjct: 62 TVGIDFRNKVVTVDGVRVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNKSSFDNIRAWLTEIHEYAQRDVVIMLLGNKADMSSERVIRSEDGETLAREYGVPFLETSAKTGMNVELAFLAIAKEL 191
BLAST of CV884212 vs. ExPASy Swiss-Prot
Match: RAB23_MOUSE (Ras-related protein Rab-23 OS=Mus musculus GN=Rab23 PE=1 SV=2) HSP 1 Score: 71.633 bits (174), Expect = 5.922e-12 Identity = 39/132 (29.55%), Postives = 63/132 (47.73%), Query Frame = -2 Query: 450 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD------VKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 827 TIGV+ N +R WDTAGQE+F + YY Q +++F T R +++ + +W + +IP L NK+D +KN + + ++ L++Y S K + N + F YLA K Sbjct: 41 TIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEG----LAKRLKLRFYRTSVKEDLNVSEVFKYLAEK 168
BLAST of CV884212 vs. ExPASy Swiss-Prot
Match: RAB18_CAEBR (Ras-related protein Rab-18 OS=Caenorhabditis briggsae GN=rab-18 PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 5.922e-12 Identity = 40/136 (29.41%), Postives = 71/136 (52.21%), Query Frame = -2 Query: 429 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNL 827 TIGV+ + +++ WDTAGQE+F L YY Q I ++DVT+R +++ + W ++ C +N+ ++ NK+D+ NR V ++ + F ++ + E SAK+ + F L K+ P+L Sbjct: 43 TIGVDFRVTSMTIDGNRVKLAIWDTAGQERFRTLTPSYYRGAQGVICVYDVTSRSSFEKLKHWMTEVDTYCTNDNVIKMMVANKIDMPNRTVTREEGLKFAKRHRTLFIEASAKTKEGVQCTFEELIEKIIQTPDL 178
BLAST of CV884212 vs. ExPASy Swiss-Prot
Match: RAB12_CANFA (Ras-related protein Rab-12 (Fragment) OS=Canis familiaris GN=RAB12 PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 5.922e-12 Identity = 40/127 (31.50%), Postives = 71/127 (55.91%), Query Frame = -2 Query: 459 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVK-NRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYL 827 T+GV+ KIR WDTAGQE+F + YY + I+++D+T + T+ ++P W + + + E+ ++L GNK+D + +R++ +Q H +++ E SAK N+N ++ FL L Sbjct: 38 TVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAHEITGMRFCEASAKDNFNVDEIFLKL 164
BLAST of CV884212 vs. ExPASy Swiss-Prot
Match: YPT2_SCHPO (GTP-binding protein ypt2 OS=Schizosaccharomyces pombe GN=ypt2 PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 7.734e-12 Identity = 42/134 (31.34%), Postives = 74/134 (55.22%), Query Frame = -2 Query: 447 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL------QYYEISAKSNYNFEKPFLYLARKL 827 TIG++ + +I+ WDTAGQE+F + YY ++++DVT + ++ NV TW ++ EN+ +L GNK D +++ +QV+F + + L ++ E SAK+N N ++ F LAR++ Sbjct: 41 TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILIGNKCDCEDQ----RQVSFEQGQALADELGVKFLEASAKTNVNVDEAFFTLAREI 170
BLAST of CV884212 vs. ExPASy Swiss-Prot
Match: RAB5C_BOVIN (Ras-related protein Rab-5C OS=Bos taurus GN=RAB5C PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 7.734e-12 Identity = 41/113 (36.28%), Postives = 64/113 (56.64%), Query Frame = -2 Query: 447 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDV-KNRQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKL 776 ++F WDTAGQE++ L YY Q AI+++D+T T+ W ++L R NI I L GNK D+ R V+ ++ + + N L + E SAK+ N + F+ +A+KL Sbjct: 70 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYAEDNSLLFMETSAKTAMNVNEIFMAIAKKL 182
BLAST of CV884212 vs. ExPASy Swiss-Prot
Match: YPTC6_CHLRE (Ras-related protein YPTC6 OS=Chlamydomonas reinhardtii GN=YPTC6 PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 1.010e-11 Identity = 42/123 (34.15%), Postives = 66/123 (53.66%), Query Frame = -2 Query: 468 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKNRQVKAKQV--TFHRKKNLQYYEISAKSNYNFEKPF 827 TIGVE + I+ WDTAGQE++ + YY A++++D+T +T++NV W ++L NI I+L GNK D+K+ + +V F ++ L + E SA + N EK F Sbjct: 44 TIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKSVTFENVERWLKELRDHADSNIVIMLVGNKSDLKHLRDVQTEVAQAFCEREGLSFIETSALESTNVEKAF 166
BLAST of CV884212 vs. ExPASy Swiss-Prot
Match: YPT3_SCHPO (GTP-binding protein ypt3 OS=Schizosaccharomyces pombe GN=ypt3 PE=1 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 1.010e-11 Identity = 47/147 (31.97%), Postives = 75/147 (51.02%), Query Frame = -2 Query: 426 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL----------AGDPNLH 827 TIGVE + + KI+ WDTAGQE++ + YY A+I++D+T + ++ NV W ++L + NI I+L GNK D+ + R V ++ F + NL + E SA N E+ F + ++ AGD +H Sbjct: 42 TIGVEFATRNIVLDNKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHADSNIVIMLVGNKTDLLHLRAVSTEEAQAFAAENNLSFIETSAMDASNVEEAFQTVLTEIFRIVSNRSLEAGDDGVH 188
BLAST of CV884212 vs. ExPASy Swiss-Prot
Match: RHA1_ARATH (Ras-related protein RHA1 OS=Arabidopsis thaliana GN=RHA1 PE=1 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 1.010e-11 Identity = 45/142 (31.69%), Postives = 76/142 (53.52%), Query Frame = -2 Query: 411 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESP 827 TIG N ++F WDTAGQE++ L YY AII+FD+T + +++ W ++L + N+ + L GNK D+ + R+V A++ + ++N L + E SAK+ N + F +A++L P + E+P Sbjct: 42 TIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVSAEEAEIYAQENSLFFMETSAKTATNVKDIFYEIAKRL---PRVQPAENP 180 The following BLAST results are available for this feature:
BLAST of CV884212 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 226
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Sequences
The
following sequences are available for this feature:
EST sequence >CV884212 ID=CV884212; Name=CV884212; organism=Citrus sinensis; type=EST; length=828bpback to top |