CV884212

Overview
NameCV884212
Unique NameCV884212
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length828
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV884212_ssr336 microsatellite CV884212_ssr336:336..347. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12573 contig Csv1_Contig12573:204..1031. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884212 vs. ExPASy Swiss-Prot
Match: GSP1_NEUCR (GTP-binding nuclear protein GSP1/Ran OS=Neurospora crassa GN=gsp-1 PE=2 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 2.365e-69
Identity = 125/174 (71.84%), Postives = 140/174 (80.46%), Query Frame = -2
Query:  306 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDEDDD 827
            T+GVEVHPL F TN G+I+F  WDTAGQEKFGGLRDGYYI+GQC IIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVDVK R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKL G+  L FV +PALAPP   +D              A  PLP+E+DD
Sbjct:   39 TLGVEVHPLGFSTNFGQIQFDVWDTAGQEKFGGLRDGYYINGQCGIIMFDVTSRITYKNVPNWHRDLTRVCENIPIVLCGNKVDVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLVGNNALEFVAAPALAPPTAVVDQELMEKYRAEMDEAAQMPLPNEEDD 212          
BLAST of CV884212 vs. ExPASy Swiss-Prot
Match: RANT_RAT (GTP-binding nuclear protein Ran, testis-specific isoform OS=Rattus norvegicus GN=Rasl2-9 PE=2 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 2.002e-68
Identity = 123/174 (70.69%), Postives = 138/174 (79.31%), Query Frame = -2
Query:  306 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDEDDD 827
            T+GVEVH L F TN G I+F  WDTAGQEKFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP+WH+DL RVCENIPIVLCGNKVD+K+ +VKAK + FHRKKNLQYY+ISAKSNYNFEKPF +LARKL GDPNL FV  PALAPPEV +D               +  LPDE+DD
Sbjct:   42 TLGVEVHTLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPSWHKDLVRVCENIPIVLCGNKVDIKDMKVKAKPILFHRKKNLQYYDISAKSNYNFEKPFFWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEEDD 215          
BLAST of CV884212 vs. ExPASy Swiss-Prot
Match: RANT_MOUSE (GTP-binding nuclear protein Ran, testis-specific isoform OS=Mus musculus GN=Rasl2-9 PE=2 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 3.416e-68
Identity = 123/174 (70.69%), Postives = 138/174 (79.31%), Query Frame = -2
Query:  306 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDEDDD 827
            T+GVEVH L F TN G I+F  WDTAGQEKFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP+WH+DL RVCENIPIVLCGNKVDVK+ +VKAK + FHRKKNLQYY+ISA+SNYNFEKPF +LARKL GDPNL FV  PALAPPEV +D               +  LPDE+DD
Sbjct:   42 TLGVEVHTLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPSWHKDLVRVCENIPIVLCGNKVDVKDMKVKAKPILFHRKKNLQYYDISARSNYNFEKPFFWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEEDD 215          
BLAST of CV884212 vs. ExPASy Swiss-Prot
Match: RAN_DICDI (GTP-binding nuclear protein Ran OS=Dictyostelium discoideum GN=ranA PE=1 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 9.009e-61
Identity = 109/174 (62.64%), Postives = 130/174 (74.71%), Query Frame = -2
Query:  306 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDEDDD 827
            T+GV VHPL F+TN GKI F  WDTAGQEKFGGLRDGYYI G CAIIMFDVT+R++YKNVP WH DL RVCENIPIVLCGNKVDVK+R+VK  Q+ FHR+ NL YY++SAKSNYNFEKPF++L  KL G+  +  V+ P L  PE  +D              A+ PLP+++DD
Sbjct:   38 TLGVSVHPLIFYTNFGKIHFNVWDTAGQEKFGGLRDGYYIQGNCAIIMFDVTSRISYKNVPNWHSDLTRVCENIPIVLCGNKVDVKDRKVKPSQIVFHRRYNLSYYDVSAKSNYNFEKPFVWLTSKLLGNKAVTLVQQPTLKLPETVLDSNLMSLYEKEVADAAALPLPEDNDD 211          
BLAST of CV884212 vs. ExPASy Swiss-Prot
Match: RAN4_ARATH (GTP-binding nuclear protein Ran-4 OS=Arabidopsis thaliana GN=RAN4 PE=3 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.537e-60
Identity = 112/168 (66.67%), Postives = 130/168 (77.38%), Query Frame = -2
Query:  324 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPL 827
            T+GV+++PLDFFTN GKIRF CWDTAGQEK+ GL+D YYIHGQCAIIMFDVTAR TY N+  W+RDL RVC+NIPIVLCGNKVDV +RQ+K K V++HRKK LQYYE+SAK+N NFEKPFLYLAR++AGD  L FVES     PE QID               +QPL
Sbjct:   45 TLGVDIYPLDFFTNRGKIRFECWDTAGQEKYSGLKDAYYIHGQCAIIMFDVTARHTYMNIDRWYRDLRRVCKNIPIVLCGNKVDVPSRQIKPKHVSYHRKKCLQYYEMSAKNNCNFEKPFLYLARRIAGDAKLSFVES-----PEAQIDNLDVESLQLLTVEAGTQPL 207          
BLAST of CV884212 vs. ExPASy Swiss-Prot
Match: RAN_PLAFA (GTP-binding nuclear protein Ran OS=Plasmodium falciparum PE=2 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 8.433e-59
Identity = 107/149 (71.81%), Postives = 126/149 (84.56%), Query Frame = -2
Query:  381 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID 827
            T+GVEVHPL F TN GK +F  WDTAGQEKFGGLRDGYYI   CAIIMFDV++R+TYKNVP W+RD+ RVCE IP+VL GNKVDVK+RQVK++Q+ FHRK+NLQYY++SA+SNYNFEKPFL+LAR+L+  PNL FV   A A PE QID
Sbjct:   41 TLGVEVHPLKFQTNFGKTQFNVWDTAGQEKFGGLRDGYYIKSDCAIIMFDVSSRITYKNVPNWYRDITRVCETIPMVLVGNKVDVKDRQVKSRQIQFHRKRNLQYYDLSARSNYNFEKPFLWLARRLSNQPNLVFVGEHAKA-PEFQID 188          
BLAST of CV884212 vs. ExPASy Swiss-Prot
Match: RAN_TETPY (GTP-binding nuclear protein Ran OS=Tetrahymena pyriformis PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 4.788e-54
Identity = 103/180 (57.22%), Postives = 129/180 (71.67%), Query Frame = -2
Query:  300 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQI--DXXXXXXXXXXXXXXASQ--PLPDEDDDAF 827
            T GV V  +   T  G IRF  WDTAGQEK GGLR+GYYI    AI+MFDVT+R+TYKN+P WH+DL R+CEN+PIVL GNKVD K+ +VKA+Q+TFHRK++LQYY++SAKSNY +EKPFL++ RKL GDPNL+ VE  ALAP ++ +  D               +Q   LPDE+DD F
Sbjct:   43 TQGVNVSNMILHTTKGAIRFNIWDTAGQEKLGGLREGYYIGADAAIMMFDVTSRITYKNIPKWHKDLTRICENVPIVLVGNKVDSKDSKVKARQITFHRKRSLQYYDVSAKSNYQYEKPFLWILRKLTGDPNLNLVEGIALAPVDIHMTEDQIKQLQMEHDEAMNLAQQGQLPDEEDDEF 222          
BLAST of CV884212 vs. ExPASy Swiss-Prot
Match: RAN_TETTH (GTP-binding nuclear protein Ran OS=Tetrahymena thermophila PE=2 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 4.054e-53
Identity = 102/182 (56.04%), Postives = 128/182 (70.33%), Query Frame = -2
Query:  300 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQ----IDXXXXXXXXXXXXXXASQP--LPDEDDDAF 827
            T GV V  +  +T  G IRF  WDTAGQEK GGLR+GYYI    AI+MFDVT+R+TYKN+P WH+DL R+CENIPIVL GNKVD K+R+VKA+Q+TFHRK++LQYY++SAKSNY +EKPFL++ RKL GDP L+ VE  AL  P+ +     D               +Q   LPD++DD F
Sbjct:   43 TQGVNVSNMVLYTTKGPIRFNIWDTAGQEKLGGLREGYYIGANAAIMMFDVTSRITYKNIPKWHKDLTRICENIPIVLVGNKVDSKDRKVKARQITFHRKRSLQYYDVSAKSNYQYEKPFLWILRKLTGDPTLNLVEGIALVAPDTEHVMTEDQIKQLEMEQAEAMNLAQQGVLPDDEDDEF 224          
BLAST of CV884212 vs. ExPASy Swiss-Prot
Match: RANL_DROME (GTP-binding nuclear protein Ran-like OS=Drosophila melanogaster GN=ran-like PE=1 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.719e-49
Identity = 95/169 (56.21%), Postives = 114/169 (67.46%), Query Frame = -2
Query:  321 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLP 827
            T+GVEV  L F TN G  R   WDTAGQE++GGLRDGY++  QCAIIMFDV +  TY NV  WHRDL RVC NIPIV+CGNKVD+ +++   K V F RK N+   E+SAKSNYN EKPF+YL RKL GDP+L  V+SPA+ PP+V                  S+PLP
Sbjct:   42 TLGVEVEQLLFNTNRGVFRIDVWDTAGQERYGGLRDGYFVQSQCAIIMFDVASSNTYNNVKRWHRDLVRVCGNIPIVICGNKVDIMHKKTWKKGVDFDRKTNIYLIEMSAKSNYNVEKPFVYLLRKLVGDPSLQLVQSPAIQPPKVVFTDEMSRQVESLFNEAKSKPLP 210          
BLAST of CV884212 vs. ExPASy Swiss-Prot
Match: RAN_GIALA (GTP-binding nuclear protein Ran OS=Giardia lamblia PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.683e-39
Identity = 81/189 (42.86%), Postives = 111/189 (58.73%), Query Frame = -2
Query:  312 TIGVEVHPLDFFT------NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN-----------IPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDED 827
            TIGVE+  L F+       N  ++     DTAGQEKFGGLRDGYY+     ++ FDVT R+TYKNV +W+RD+ R+C             + IVL GNK DVK+R+++ + V FHR KN+ Y EISAK N+N+E P L + R L  DP + F ++PAL P ++ +D               + PLPD+D
Sbjct:   38 TIGVEIRQLPFYVAGQSCPNGREVLLNVHDTAGQEKFGGLRDGYYVDSDACLLFFDVTNRVTYKNVESWYRDVFRICPTRRDASTGEEKPLAIVLVGNKCDVKDREIRTQTVKFHRSKNIPYVEISAKDNFNYELPILSILRTLLNDPTIQFSQAPALLPADIGMDAATREQINKDLEAVNNVPLPDDD 226          
The following BLAST results are available for this feature:
BLAST of CV884212 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 226
Match NameE-valueIdentityDescription
GSP1_NEUCR2.365e-6971.84GTP-binding nuclear protein GSP1/Ran OS=Neurospora... [more]
RANT_RAT2.002e-6870.69GTP-binding nuclear protein Ran, testis-specific i... [more]
RANT_MOUSE3.416e-6870.69GTP-binding nuclear protein Ran, testis-specific i... [more]
RAN_DICDI9.009e-6162.64GTP-binding nuclear protein Ran OS=Dictyostelium d... [more]
RAN4_ARATH1.537e-6066.67GTP-binding nuclear protein Ran-4 OS=Arabidopsis t... [more]
RAN_PLAFA8.433e-5971.81GTP-binding nuclear protein Ran OS=Plasmodium falc... [more]
RAN_TETPY4.788e-5457.22GTP-binding nuclear protein Ran OS=Tetrahymena pyr... [more]
RAN_TETTH4.054e-5356.04GTP-binding nuclear protein Ran OS=Tetrahymena the... [more]
RANL_DROME2.719e-4956.21GTP-binding nuclear protein Ran-like OS=Drosophila... [more]
RAN_GIALA5.683e-3942.86GTP-binding nuclear protein Ran OS=Giardia lamblia... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002A05_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T7_A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884212 ID=CV884212; Name=CV884212; organism=Citrus sinensis; type=EST; length=828bp
AGCGTAATTGATCCTCAATTATCAACACAATATATAAATGAACTAGGATA
TGGGGCATCATTTAAACATCCTACAGAAAATTGGATGGCTCCCCCGCTGG
TAAACAGAGAATGTAGACGCGAAAACAAAAACAAGTAGAGACTGACATGA
ATTAGGCAAGAGTAAGAAACACAATGCTAAATAAGCCAGCAATGGTTCAA
TCCAAAGCTCATGTCAAAAGACACCCAACAGATCCTCAAAACAATCAATA
TTGAACTCTTCACTCCAATAATCACACGATCCATTGTCTTCTTTCACTCG
AAGGCGTCATCATCTTCATCTGGGAGAGGTTGACTAGCAGCAGCAGCAAG
TTCAGCTTCATGTTGTTGCTGAGCAGCCAAATCGATTTGCACCTCTGGGG
GAGCAAGGGCAGGAGACTCGACAAAATGCAAGTTAGGATCCCCAGCAAGT
TTTCTGGCAAGGTAAAGAAAAGGCTTCTCAAAGTTGTAATTGCTCTTGGC
TGAGATCTCATAGTACTGCAAATTCTTCTTCCTGTGGAAAGTAACCTGCT
TTGCTTTCACCTGCCTGTTCTTCACATCGACCTTGTTCCCGCAAAGAACA
ATTGGGATGTTTTCACACACCCTGCAGAGATCACGGTGCCACGTCGGAAC
ATTCTTATACGTCAAGCGGGCAGTAACATCAAACATGATGATAGCACATT
GCCCATGGATGTAGTATCCATCTCTAAGACCACCAAACTTCTCTTGTCCG
GCAGTGTCCCAGCAATAGAATCGTATTTTTCCACAGTTGGTAAAGAAGTC
CAATGGATGAACTTCCACACCAATGGTC
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