CV884205

Overview
NameCV884205
Unique NameCV884205
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV884205_ssr756 microsatellite CV884205_ssr756:756..767. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7277 contig Csv1_Contig7277:1..824. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884205 vs. ExPASy Swiss-Prot
Match: GL123_ORYSJ (Putative germin-like protein 12-3 OS=Oryza sativa subsp. japonica GN=Os12g0154900 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.759e-23
Identity = 65/177 (36.72%), Postives = 93/177 (52.54%), Query Frame = -1
Query:  234 VNDFCVADLKLSDSPAGYPCVPPAMVTADDFVFSG---------LGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPMHTHPAASEILLVVHGCITAGFISSS----ANTVYVKTLKKGDIMIFPQGLLHFQVNSGAD-GALGFVSFNSPNPGLQITDFALFANN 722
            + D CVAD        G+PC     V+ DDF  +             AG+  ++IN       V +   +N LG+S+AR+D A  G  P HTHP A+EIL V+ G +  GF++S+     N ++ KTL KGD+ +FP+GL+HFQ N   D  A   V+ +S NPG      A+F +N
Sbjct:   28 LQDLCVADKNSPVRVNGFPCKDAKDVSVDDFFLAANLDKPMDITKSKAGSNVTLIN-------VMKLAGLNTLGISMARIDYAPKGQNPPHTHPRATEILSVIEGSLYVGFVTSNQANGENKLFTKTLNKGDVFVFPEGLIHFQFNPSYDKPAAAIVALSSQNPGAITIANAVFGSN 197          
BLAST of CV884205 vs. ExPASy Swiss-Prot
Match: GL31_ORYSJ (Germin-like protein 3-1 OS=Oryza sativa subsp. japonica GN=Os03g0179000 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.706e-23
Identity = 67/198 (33.84%), Postives = 104/198 (52.53%), Query Frame = -1
Query:  156 DFCVADLKLSDSPA-----GYPCVPPAMVTADDFVFSGLGVAGNTTSII---NAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPMHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVN-SGADGALGFVSFNSPNPGLQITDFALFAN--NLSSQLVEQTTFLDDATVKRLKGILGG 716
            D+CVAD   + +       G  C+ PA+  AD F  S L  A N  + +   NA +T    A  P  N  GL++AR+DLA GG+ P H+HP ASE  LV+ G +  GF  +S   +Y + L+ G+  +FP+ ++HF  N   A  A+     NS +PG Q+  F+ F     L  +++++   +    V+R++  LGG
Sbjct:   29 DYCVADTAAATAAGAFHLNGLACIDPALARADHFATSALSRATNPAATLYGFNATLTSP-AASLPGANAQGLAMARIDLAPGGMAPPHSHPRASEAALVLSGSVLVGFADTSYR-LYTQLLRAGEAFVFPRAMVHFLYNMDTAAPAVVLSGLNSQSPGAQLVPFSAFRTEPRLPDEVLKKAFKITGQDVQRIQKHLGG 224          
BLAST of CV884205 vs. ExPASy Swiss-Prot
Match: GL124_ORYSJ (Putative germin-like protein 12-4 OS=Oryza sativa subsp. japonica GN=Os12g0155000 PE=3 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.788e-22
Identity = 66/170 (38.82%), Postives = 93/170 (54.71%), Query Frame = -1
Query:  234 VNDFCVADLKLSDSPAGYPCVPPAMVTADDFVFSG-LGVAGNTT-SIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPMHTHPAASEILLVVHGCITAGFISSS----ANTVYVKTLKKGDIMIFPQGLLHFQVNSGAD-GALGFVSFNSPNPGLQITDFALFANN 722
            + DFCVAD        G PC     V+ DDF  +  L    +TT S   + VT   V +   +N L +S+AR+D A  G  P HTHP A+EIL V+ G +  GF++S+     N ++ KTL KGD+ +FPQGL+HFQ N   D  A+   + +S NPG      A+F ++
Sbjct:   28 LQDFCVADKHSPVRVNGLPCKDAKDVSVDDFFLAANLDKPMDTTKSKAGSNVTLINVMKLAGLNTLSISMARIDYAPKGQNPPHTHPRATEILTVLEGSLYVGFVTSNQANRENKLFTKTLNKGDVFVFPQGLIHFQFNPSYDKPAVAIAALSSQNPGAITIANAVFGSH 197          
BLAST of CV884205 vs. ExPASy Swiss-Prot
Match: GL111_ORYSJ (Germin-like protein 11-1 OS=Oryza sativa subsp. japonica GN=Os11g0537300 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.051e-22
Identity = 55/145 (37.93%), Postives = 84/145 (57.93%), Query Frame = -1
Query:  240 GYPCVPPAMVTADDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPMHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFA 674
            G+ C  P+ + A DF    L  AG+  +++ ++       +FP +N LG+S+AR D+A  G +  H+HP ASE++ V  G + AGF  +    ++ KTL +GD+ IFP+GL+HF +N G   A  F   NS NPG+     A+FA
Sbjct:   46 GFFCKSPSTIMASDFKTLLLNHAGDLDNMVRSSANIITATEFPGLNTLGISMARTDIAVSGAVLPHSHPRASEMMFVHSGSVVAGFFDTKGK-LFQKTLAEGDVFIFPRGLVHFIMNYGFGLATTFSVLNSQNPGVVGITHAMFA 189          
BLAST of CV884205 vs. ExPASy Swiss-Prot
Match: GLT3_ARATH (Germin-like protein subfamily T member 3 OS=Arabidopsis thaliana GN=At1g74820 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.984e-22
Identity = 51/133 (38.35%), Postives = 83/133 (62.41%), Query Frame = -1
Query:  318 DFCVADLKLSDSPAGYPCVPPAMVTADDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPMHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSG 716
            DFCVADL+ + + +GYPC   + VT++DF +SGL    NT++    A  PA +  FP +N LG+S+  + +A GG    H+HP  +E  +V+ G +  GF++++  T+Y K +  GD+ + P GL+H++ N G
Sbjct:   42 DFCVADLQATPTNSGYPC--KSQVTSEDFFYSGLNTPLNTSNPKGIAANPANLLTFPGLNTLGISMYNVAIAPGGYNQPHSHPGVTEAGVVIEGSVLVGFLTTN-YTLYSKVIGPGDMFVIPPGLIHYEGNVG 171          
BLAST of CV884205 vs. ExPASy Swiss-Prot
Match: GL93_ORYSJ (Germin-like protein 9-3 OS=Oryza sativa subsp. japonica GN=Os09g0568700 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.813e-21
Identity = 57/167 (34.13%), Postives = 92/167 (55.09%), Query Frame = -1
Query:  171 VTADDFVFSGLGVAGNTTSI--------INAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPMHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANNLSSQLVEQTTFLDDATVKRLK 647
            +T D F F+G     N  S+         N  VT A +A+FPA+NG  +S A L      + P HTHP ++E+LL+V G ++ GF+ ++ N +Y + L  GD+ +FP+G++HFQ NSG   A+   +F S   GL      +F  N+   ++ ++   D  T+++LK
Sbjct:   43 ITGDFFTFTGFR---NPLSMNMSMPMPNANFTVTKATMAEFPALNGQSVSYAVLMYPPATLNPPHTHPRSAELLLLVDGALSVGFVDTT-NKLYTQDLAAGDMFVFPKGMVHFQFNSGNQPAMALSAFGSAAAGLVSVPVTVFGTNIDDAVLAKSFKTDVPTIQKLK 205          
BLAST of CV884205 vs. ExPASy Swiss-Prot
Match: GL11_ARATH (Germin-like protein subfamily 1 member 1 OS=Arabidopsis thaliana GN=GLP7 PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 3.729e-20
Identity = 59/167 (35.33%), Postives = 84/167 (50.30%), Query Frame = -1
Query:  243 VNDFCVADLKLSDSPA---GYPCVPPAMVTADDFVFSGLGVAGNTTS---IINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPMHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVN-SGADGALGFVSFNSPNPGLQITDFALF 722
            + D+CV+    S       G  C  P   +  DF  S L   GNT +   +IN  VT    A  P +N +GL++ARLD    GV+P H HP ASE+ + + G +  GF+ +S   V+ + L  G+  +FP+GL+HF  N      AL     +S NPG QI   + F
Sbjct:   23 LQDYCVSPPPSSHQQIFLNGKLCKDPTQASVSDFSTSALSRPGNTKTKPFMINVTVTTT--ANLPGLNTVGLTMARLDFGGSGVVPPHVHPRASEVTVCLDGVLLVGFVDTSGR-VFTQELHPGETFVFPKGLIHFLYNIDTVSSALAVSGLSSQNPGTQIVSLSSF 186          
BLAST of CV884205 vs. ExPASy Swiss-Prot
Match: SR1A_PHYPO (Spherulin-1A OS=Physarum polycephalum PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.164e-11
Identity = 42/131 (32.06%), Postives = 62/131 (47.33%), Query Frame = -1
Query:  243 DFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPMHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALF 635
            DF  S LGV   T               FPAV G  +++    +   G+   HTHP A+EI  +  G   AGF   +       TL+ G   +FPQG +HF++N   + A+   +FN+ +PG+Q T  + F
Sbjct:   75 DFKNSKLGVTQGT----GGKTVATSRTNFPAVIGHNVAMTVGFIEACGINLPHTHPRATEINFIASGKFEAGFFLENQAKFIGHTLEAGMATVFPQGAIHFEINMNCEPAMFVAAFNNEDPGVQTTASSFF 201          
BLAST of CV884205 vs. ExPASy Swiss-Prot
Match: SR1B_PHYPO (Spherulin-1B OS=Physarum polycephalum PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.133e-11
Identity = 42/131 (32.06%), Postives = 63/131 (48.09%), Query Frame = -1
Query:  243 DFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPMHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALF 635
            DF  S LGV    T              FPAV G  +++    +   G+   HTHP A+EI  +  G   AGF   +  T     L++G   +FPQG +HF++N   + A+   +FN+ +PG+Q T  + F
Sbjct:   62 DFKNSKLGV----TQSAGGKTVATSRTDFPAVIGHNIAMTVGFIEACGINLPHTHPRATEINFIAKGRFQAGFFLENQATFIGHILEEGMATVFPQGAIHFEINLECEPAMFVAAFNNEDPGVQTTASSFF 188          
The following BLAST results are available for this feature:
BLAST of CV884205 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GL123_ORYSJ2.759e-2336.72Putative germin-like protein 12-3 OS=Oryza sativa ... [more]
GL31_ORYSJ4.706e-2333.84Germin-like protein 3-1 OS=Oryza sativa subsp. jap... [more]
GL124_ORYSJ1.788e-2238.82Putative germin-like protein 12-4 OS=Oryza sativa ... [more]
GL111_ORYSJ3.051e-2237.93Germin-like protein 11-1 OS=Oryza sativa subsp. ja... [more]
GLT3_ARATH3.984e-2238.35Germin-like protein subfamily T member 3 OS=Arabid... [more]
GL93_ORYSJ9.813e-2134.13Germin-like protein 9-3 OS=Oryza sativa subsp. jap... [more]
GL11_ARATH3.729e-2035.33Germin-like protein subfamily 1 member 1 OS=Arabid... [more]
SR1A_PHYPO3.164e-1132.06Spherulin-1A OS=Physarum polycephalum PE=1 SV=1[more]
SR1B_PHYPO4.133e-1132.06Spherulin-1B OS=Physarum polycephalum PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002A01_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T7_A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884205 ID=CV884205; Name=CV884205; organism=Citrus sinensis; type=EST; length=869bp
GAGAATTTTATTTATTCAGAAGAAAAGATAGGGGAAGTGAGAACAGAGAA
AATACTAACTCGTGAATTCCAACAATCAAATACATTAGCAACTAAATGAA
ATTAAGAACTCAAAACTACAAATGAAGAATGTGGTAACTAATAAGCCTAG
CCGGTGCCACCAAGGATACCCTTGAGCCTCTTCACCGTAGCATCGTCAAG
GAAAGTGGTCTGCTCCACCAATTGGGAAGACAAGTTGTTGGCAAATAAGG
CGAAATCGGTGATTTGGAGTCCAGGATTCGGGCTGTTGAAGCTAACAAAA
CCGAGGGCTCCGTCCGCGCCGGAATTTACTTGAAAATGCAACAACCCTTG
TGGAAAGATCATGATATCTCCCTTCTTAAGCGTCTTTACGTAAACAGTGT
TAGCTGAAGAGGAAATGAACCCGGCAGTTATGCAGCCATGCACAACAAGA
AGGATTTCGGAAGCAGCTGGATGAGTGTGCATTGGGATTACGCCACCCTT
TGCAAGATCTAGGCGTGCCAAGGAGAGTCCGAGGCCATTCACGGCCGGAA
ATTGAGCTACAAATGCAGGTGTCACTGCCGCGTTGATAATACTCGTGGTG
TTTCCGGCCACGCCGAGGCCCGAAAATACGAAGTCGTCAGCGGTAACCAT
AGCAGGGGGCACGCAAGGATAGCCGGCGGGACTATCCGACAGCTTTAGGT
CAGCGACGCAGAAGTCGTTAACCATAGCATTGGAGGAAGAGGATACGAAA
GCAAGGAAGAAGAAGAAGAGAATGTGAAGCATTTTGACTAATATTTATTT
TTTTTTTTTTTTTTTATTGGGAATATAAAATTTCATAAGCCAAAGTATAT
AATGATATGTTATTCAAAA
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