CV720156

Overview
NameCV720156
Unique NameCV720156
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV720156 vs. ExPASy Swiss-Prot
Match: PSBO_CHLRE (Oxygen-evolving enhancer protein 1, chloroplastic OS=Chlamydomonas reinhardtii GN=PSBO PE=2 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 9.101e-65
Identity = 126/195 (64.62%), Postives = 142/195 (72.82%), Query Frame = -1
Query:  177 IRSTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFLFTIKQLVASGKPENFGGEFLVPSYRGSSFLDPKGRGGSTGYDNAIALPAGGRGDEEDLAKENIKNTSSSTGKITLSVTKSKPETGEVIGVFESIQPSDTDLGAKVPKDVKIQGIWYAQLE 761
            I  TSFTVK E   K    +F  TKLMTRLTYTLD + G F+V  DG+ +  E DGIDYAA TVQL GGERV FLFTIKQ    G  +   G+FLVPSYRGSSFLDPKGRGGSTGYDNA+ALPA  R D E+L KEN+K T +  G    SV K  P TGE+ GVFESIQPSDTDLGAK PKD+K+ G+WYAQL+
Sbjct:   99 IEPTSFTVKEESQFKGGETEFVKTKLMTRLTYTLDAMSGSFKVGSDGSAELKEDDGIDYAATTVQLPGGERVAFLFTIKQFDGKGTLDGIKGDFLVPSYRGSSFLDPKGRGGSTGYDNAVALPA--RADAEELLKENVKITKALKGSAVFSVAKVDPVTGEIAGVFESIQPSDTDLGAKPPKDIKVTGLWYAQLK 291          
BLAST of CV720156 vs. ExPASy Swiss-Prot
Match: PSBO_EUGGR (Oxygen-evolving enhancer protein 1, chloroplastic OS=Euglena gracilis GN=PSBO PE=1 SV=2)

HSP 1 Score: 240.35 bits (612), Expect = 8.518e-63
Identity = 120/194 (61.86%), Postives = 142/194 (73.20%), Query Frame = -1
Query:  180 IRSTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFLFTIKQLVASGKPENFGGEFLVPSYRGSSFLDPKGRGGSTGYDNAIALPAGGRGDEEDLAKENIKNTSSSTGKITLSVTKSKPETGEVIGVFESIQPSDTDLGAKVPKDVKIQGIWYAQL 761
            +  +SF VK     K    +F+ TKLMTRLTYTLD I     V  DG+    EKDG+DYAA TVQLAGGERVPFLFTIK L+A G    F G+F VPSYRG++FLDPKGRGG++GYD A+ALPA   GD+E+ AKEN K+T++S G I   V K   ETGE+ GVFESIQPSDTDLGAKVPKD+K  G+WYAQ+
Sbjct:  143 LEPSSFQVKLPPTEKQQVTEFERTKLMTRLTYTLDAISADLNVGGDGSWTIQEKDGLDYAATTVQLAGGERVPFLFTIKNLLAKGDAGQFLGQFDVPSYRGATFLDPKGRGGASGYDTAVALPAS--GDDEEYAKENSKSTAASVGTIAFKVAKVNAETGEIAGVFESIQPSDTDLGAKVPKDIKTSGVWYAQI 334          
BLAST of CV720156 vs. ExPASy Swiss-Prot
Match: PSBO_ANASP (Photosystem II manganese-stabilizing polypeptide OS=Anabaena sp. (strain PCC 7120) GN=psbO PE=3 SV=2)

HSP 1 Score: 209.92 bits (533), Expect = 1.233e-53
Identity = 107/203 (52.71%), Postives = 140/203 (68.97%), Query Frame = -1
Query:  177 IRSTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFLFTIKQLVASGKP--------ENFGGEFLVPSYRGSSFLDPKGRGGSTGYDNAIALPAGGRGDEEDLAKENIKNTSSSTGKITLSVTKSKPETGEVIGVFESIQPSDTDLGAKVPKDVKIQGIWYAQLE 761
            +  T+F VK E  NK    +F   KL+TR T T+D++ G  + + D ++ FVEKDG+D+ A+TVQL GGERVPFLFTIK LVA  +P         +F G F VPSYRG++FLDPKGRG  +GYDNA+ALPA  + D+EDL + N+K      GKI+L + K    +GE+ G FES QPSDTDLGA  PK+VKI+GI+YA++E
Sbjct:   73 LEPTNFFVKEEPANKRQTAEFVAGKLLTRYTSTIDQVSGDLKFNDDSSLTFVEKDGLDFQAITVQLPGGERVPFLFTIKNLVAQTQPGLSSLNTSTDFEGTFKVPSYRGAAFLDPKGRGVVSGYDNAVALPA--QADDEDLTRTNVKRAEILNGKISLQIAKVDSSSGEIAGTFESEQPSDTDLGADEPKEVKIRGIFYARVE 273          
BLAST of CV720156 vs. ExPASy Swiss-Prot
Match: PSBO_THEEB (Photosystem II manganese-stabilizing polypeptide OS=Thermosynechococcus elongatus (strain BP-1) GN=psbO PE=1 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.571e-51
Identity = 106/203 (52.22%), Postives = 144/203 (70.94%), Query Frame = -1
Query:  177 IRSTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFLFTIKQLVASGKPE--------NFGGEFLVPSYRGSSFLDPKGRGGSTGYDNAIALPAGGRGDEEDLAKENIKNTSSSTGKITLSVTKSKPETGEVIGVFESIQPSDTDLGAKVPKDVKIQGIWYAQLE 761
            ++ T+F VK E  NK    +F  TKL+TR T +LD+I+G  +V+ DG++ FVE+DGID+  VTVQ+AGGER+P LFT+K LVAS +P         +F GEF VPSYR ++FLDPKGRG ++GYD+AIALP   +  EE+LA+ N+K  S + G+I+L+V K    TGE+ G FES Q SD D+GA  P +VKIQG++YA +E
Sbjct:   71 LQPTTFLVKEEPKNKRQEAEFVPTKLVTRETTSLDQIQGELKVNSDGSLTFVEEDGIDFQPVTVQMAGGERIPLLFTVKNLVASTQPNVTSITTSTDFKGEFNVPSYRTANFLDPKGRGLASGYDSAIALP---QAKEEELARANVKRFSLTKGQISLNVAKVDGRTGEIAGTFESEQLSDDDMGAHEPHEVKIQGVFYASIE 270          
BLAST of CV720156 vs. ExPASy Swiss-Prot
Match: PSBO_SYNEN (Photosystem II manganese-stabilizing polypeptide OS=Synechococcus elongatus naegeli GN=psbO PE=1 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.571e-51
Identity = 106/203 (52.22%), Postives = 144/203 (70.94%), Query Frame = -1
Query:  177 IRSTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFLFTIKQLVASGKPE--------NFGGEFLVPSYRGSSFLDPKGRGGSTGYDNAIALPAGGRGDEEDLAKENIKNTSSSTGKITLSVTKSKPETGEVIGVFESIQPSDTDLGAKVPKDVKIQGIWYAQLE 761
            ++ T+F VK E  NK    +F  TKL+TR T +LD+I+G  +V+ DG++ FVE+DGID+  VTVQ+AGGER+P LFT+K LVAS +P         +F GEF VPSYR ++FLDPKGRG ++GYD+AIALP   +  EE+LA+ N+K  S + G+I+L+V K    TGE+ G FES Q SD D+GA  P +VKIQG++YA +E
Sbjct:   71 LQPTTFLVKEEPKNKRQEAEFVPTKLVTRETTSLDQIQGELKVNSDGSLTFVEEDGIDFQPVTVQMAGGERIPLLFTVKNLVASTQPNVTSITTSTDFKGEFNVPSYRTANFLDPKGRGLASGYDSAIALP---QAKEEELARANVKRFSLTKGQISLNVAKVDGRTGEIAGTFESEQLSDDDMGAHEPHEVKIQGVFYASIE 270          
BLAST of CV720156 vs. ExPASy Swiss-Prot
Match: PSBO_CYAA5 (Photosystem II manganese-stabilizing polypeptide OS=Cyanothece sp. (strain ATCC 51142) GN=psbO PE=3 SV=2)

HSP 1 Score: 193.741 bits (491), Expect = 9.144e-49
Identity = 105/197 (53.30%), Postives = 133/197 (67.51%), Query Frame = -1
Query:  180 FTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFLFTIKQLVASGKPE--------NFGGEFLVPSYRGSSFLDPKGRGGSTGYDNAIALPAGGRGDEEDLAKENIKNTSSSTGKITLSVTKSKPETGEVIGVFESIQPSDTDLGAKVPKDVKIQGIWYAQL 746
            + VK E VNK    ++   KL+TR T +L++I G   V  DG + F E+ GID+  VTVQL GGE+VPF FTIK LV   +P         +F G+F VPSYRG++FLDPKGRG +TGYDNA+ALPA    D+ED A  N+K T    G I+L VTK    TGE+ GVF+S QPSDTDLGAK P +VKI+GI+YA++
Sbjct:   79 YFVKEEPVNKRQEAEYVPGKLLTRYTTSLEQISGKITVDEDGVVTFYEEGGIDFQPVTVQLPGGEQVPFFFTIKNLVGKTEPGFSSINSSIDFEGDFRVPSYRGATFLDPKGRGLATGYDNAVALPA--TADKEDYA--NVKQTPIGKGSISLQVTKVDQATGEIAGVFDSEQPSDTDLGAKEPVEVKIRGIFYARV 271          
BLAST of CV720156 vs. ExPASy Swiss-Prot
Match: PSBO_SYNE7 (Photosystem II manganese-stabilizing polypeptide OS=Synechococcus elongatus (strain PCC 7942) GN=psbO PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 4.696e-45
Identity = 97/198 (48.99%), Postives = 129/198 (65.15%), Query Frame = -1
Query:  177 FTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFLFTIKQLVAS--------GKPENFGGEFLVPSYRGSSFLDPKGRGGSTGYDNAIALPAGGRGDEEDLAKENIKNTSSSTGKITLSVTKSKPETGEVIGVFESIQPSDTDLGAKVPKDVKIQGIWYAQLE 746
            F VK E  NK    +F   K++TR T +LD++ G   +  DGT+ F EK GID+ A+TV L GGE VPFLFT+K LVAS            +  G + VPSYR S+FLDPK RG +TGY++A+A+P+   GD EDL KEN+K   +  G+I+L+V+K    TGEV GVF +IQPSDTD+G K   DVK+ G +Y ++E
Sbjct:   78 FFVKEEPGNKRQKAEFVPGKVLTRYTSSLDQVYGDLALKADGTVSFTEKGGIDFQAITVLLPGGEEVPFLFTVKGLVASTSEPATSINTSTDLRGGYRVPSYRTSNFLDPKARGLTTGYESAVAIPSA--GDAEDLTKENVKRFVTGQGEISLAVSKVDGATGEVAGVFTAIQPSDTDMGGKEAVDVKLVGQFYGRIE 273          
BLAST of CV720156 vs. ExPASy Swiss-Prot
Match: PSBO_SYNY3 (Photosystem II manganese-stabilizing polypeptide OS=Synechocystis sp. (strain PCC 6803) GN=psbO PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.366e-44
Identity = 94/198 (47.47%), Postives = 125/198 (63.13%), Query Frame = -1
Query:  177 FTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFLFTIKQLVASGKP--------ENFGGEFLVPSYRGSSFLDPKGRGGSTGYDNAIALPAGGRGDEEDLAKENIKNTSSSTGKITLSVTKSKPETGEVIGVFESIQPSDTDLGAKVPKDVKIQGIWYAQLE 746
            + VK E VNK    ++   K++TR T +L++I G   V  DGT+ F EKDGID+  +TV L GGE VPF FT+K    + +P         +F G+F VPSYRG+ FLDPK RG  TGYDNA+ALP+       D  + N K T    G ++L VT+    TGE+ G+FES QPSDTDLGAK P DVK++GI+Y +++
Sbjct:   79 YFVKEEPVNKRQKAEYVKGKVLTRQTTSLEQIRGSIAVGADGTLTFKEKDGIDFQPITVLLPGGEEVPFFFTVKNFTGTTEPGFTSINSSTDFVGDFNVPSYRGAGFLDPKARGLYTGYDNAVALPSAA-----DKFRTNKKETPLGKGTLSLQVTQVDGSTGEIAGIFESEQPSDTDLGAKEPLDVKVRGIFYGRVD 271          
BLAST of CV720156 vs. ExPASy Swiss-Prot
Match: PSBO_POPEU (Oxygen-evolving enhancer protein 1, chloroplastic (Fragments) OS=Populus euphratica GN=PSBO PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.267e-30
Identity = 83/174 (47.70%), Postives = 88/174 (50.57%), Query Frame = -1
Query:  216 KAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFLFTIKQLVASGKPENFGGEFLVPSYRGSSFLDPKGRGGSTGYDNAIALPAGGRGDEEDLAKENIKNTSSSTGKITLSVTKSKPETGEVIGVFESIQPSDTDLGAKVPK 737
            KAEG+NKN+PPDFQ TKLMTR                         DGIDYAAVTVQL GGERVPFLFTIK                               GGSTGYDNA+ALPAGGR                           SKPETGE+IGVFES+QPSDTDLGAK PK
Sbjct:   10 KAEGINKNSPPDFQKTKLMTR-------------------------DGIDYAAVTVQLPGGERVPFLFTIK-------------------------------GGSTGYDNAVALPAGGR---------------------------SKPETGEIIGVFESLQPSDTDLGAKTPK 100          
The following BLAST results are available for this feature:
BLAST of CV720156 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
PSBO_CHLRE9.101e-6564.62Oxygen-evolving enhancer protein 1, chloroplastic ... [more]
PSBO_EUGGR8.518e-6361.86Oxygen-evolving enhancer protein 1, chloroplastic ... [more]
PSBO_ANASP1.233e-5352.71Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_THEEB2.571e-5152.22Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_SYNEN2.571e-5152.22Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_CYAA59.144e-4953.30Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_SYNE74.696e-4548.99Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_SYNY31.366e-4447.47Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_POPEU4.267e-3047.70Oxygen-evolving enhancer protein 1, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0012P20_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0012P20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV720156 ID=CV720156; Name=CV720156; organism=Citrus sinensis; type=EST; length=767bp
TTTTTTTTTTTTTTTTTCAGAATTGCAAGCATTATTATAGCATGCCATGA
TAATATACAGACGTGATAACATTCTCAGTGCTACTAAATTGAATTACAGA
AATGTTTAGCAACACCTTCAACATGTTTCAAAATCTGAATAGGAATAAGT
ACACTCATACAAGAAAAGCTCTATTGCTCAAGCTGTGCATACCAGATACC
CTGGATCTTAACATCCTTTGGAACCTTGGCTCCCAAATCAGTATCAGATG
GCTGAATGCTCTCAAACACTCCAATAACCTCTCCGGTCTCAGGCTTGCTC
TTGGTAACGCTGAGGGTGATCTTCCCTGTTGAAGATGAAGTATTCTTGAT
ATTCTCCTTGGCGAGATCTTCCTCGTCCCCTCTTCCACCGGCAGGCAATG
CAATAGCATTGTCATAACCAGTTGAACCACCCCTTCCCTTTGGGTCCAAG
AAGGATGATCCACGGTAAGATGGTACCAGGAATTCTCCTCCGAAATTCTC
AGGTTTGCCTGATGCTACCAATTGTTTGATGGTGAAAAGGAAGGGCACAC
GCTCGCCTCCAGCCAGCTGAACTGTCACAGCAGCATAGTCAATTCCATCC
TTCTCCACAAACTTAATGGTGCCATCGGGGGACACTTCAAAAGGTCCCTC
AATCTCGTCAAGGGTGTAGGTAAGGCGGGTCATGAGCTTGGTGTTCTGGA
AATCTGGTGGGGCATTCTTGTTGACACCCTCAGCCTTGACAGTGAAGGAA
GTTGAACGAATCAATGT
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