EY665240

Overview
NameEY665240
Unique NameEY665240
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1109
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY665240_ssr60 microsatellite EY665240_ssr60:60..81. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY665240 vs. ExPASy Swiss-Prot
Match: DHB14_HUMAN (17-beta-hydroxysteroid dehydrogenase 14 OS=Homo sapiens GN=HSD17B14 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.851e-13
Identity = 40/117 (34.19%), Postives = 63/117 (53.85%), Query Frame = 1
Query:  133 RLEGKVAFITGGASGIGACTAKVFAQQGAKVVIADIQEELGHSVVESIGTSNSSYVHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGPNKTPIIDNEKADFERVLSVNVTGVF 483
            R  GKV  +TGG  GIGA   + F   GA+VVI D  E  G ++ + +    + ++ CDVT E  +K  + +T+   G+LD + NNAG   P + P  +     F ++L +N+ G +
Sbjct:    6 RYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQEL--PGAVFILCDVTQEDDVKTLVSETIRRFGRLDCVVNNAGHHPPPQRP-EETSAQGFRQLLELNLLGTY 119          
BLAST of EY665240 vs. ExPASy Swiss-Prot
Match: HCD2_DROME (3-hydroxyacyl-CoA dehydrogenase type-2 OS=Drosophila melanogaster GN=scu PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 8.296e-13
Identity = 42/120 (35.00%), Postives = 66/120 (55.00%), Query Frame = 1
Query:  136 LEGKVAFITGGASGIGACTAKVFAQQGAKVVIADIQEELGHSVVESIGTSNSSYVHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGPNKTPIIDNEKA----DFERVLSVNVTGVF 483
            ++  V+ +TGGASG+G  TA+  A+QGA V++AD+    G+ V + +G     +V  DVT+E  +  A+       G+LD+  N AG     KT   +   A    DF+RV+++N  G F
Sbjct:    2 IKNAVSLVTGGASGLGRATAERLAKQGASVILADLPSSKGNEVAKELG-DKVVFVPVDVTSEKDVSAALQTAKDKFGRLDLTVNCAGTATAVKTFNFNKNVAHRLEDFQRVININTVGTF 120          
BLAST of EY665240 vs. ExPASy Swiss-Prot
Match: DHGB_BACME (Glucose 1-dehydrogenase B OS=Bacillus megaterium GN=gdhB PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 1.083e-12
Identity = 48/132 (36.36%), Postives = 74/132 (56.06%), Query Frame = 1
Query:  136 LEGKVAFITGGASGIGACTAKVFAQQGAKVVIA-DIQEELGHSVVES----IGTSNSSYVHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGPNKTPIIDNEKADFERVLSVNVTGVFLGFKHAARVLI 516
            LEGKV  ITG ++G+G   A  FA + AKVV+    +E+  +SV+E     +G   +  V  DVT ES + N +   +   GKLD+M NNAG+  P  +   +   +D+ +V+  N+TG FLG + A +  +
Sbjct:    5 LEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEEIKKVG-GEAIAVKGDVTVESDVINLVQSAIKEFGKLDVMINNAGMENPVSSH--EMSLSDWNKVIDTNLTGAFLGSREAIKYFV 133          
BLAST of EY665240 vs. ExPASy Swiss-Prot
Match: HCD2_RAT (3-hydroxyacyl-CoA dehydrogenase type-2 OS=Rattus norvegicus GN=Hsd17b10 PE=1 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 1.415e-12
Identity = 46/137 (33.58%), Postives = 72/137 (52.55%), Query Frame = 1
Query:  115 LSAITRRLEGKVAFITGGASGIGACTAKVFAQQGAKVVIADIQEELGHSVVESIGTSNSSYVHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGPNKTPIIDNEKA----DFERVLSVNVTGVFLGFKHAARVL 513
            ++A  R ++G VA ITGGASG+G  TAK    QGA  V+ D+    G +  + +G  N  +   +VT+E  ++ A+       G++D+  N AGI    KT      +     DF+RV++VN+ G F   +  A V+
Sbjct:    1 MAAAVRSVKGLVAVITGGASGLGLSTAKRLVGQGATAVLLDVPNSEGETEAKKLG-GNCIFAPANVTSEKEVQAALTLAKEKFGRIDVAVNCAGIAVAIKTYHEKKNQVHTLEDFQRVINVNLIGTFNVIRLVAGVM 136          
BLAST of EY665240 vs. ExPASy Swiss-Prot
Match: BUTA_STAAW (Acetoin(diacetyl) reductase OS=Staphylococcus aureus (strain MW2) GN=butA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.414e-12
Identity = 44/121 (36.36%), Postives = 61/121 (50.41%), Query Frame = 1
Query:  145 KVAFITGGASGIGACTAKVFAQQGAKVVIADIQEELGHSVVESIGTSNSSYV--HCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGPNKTPIIDNEKADFERVLSVNVTGVFLGFKHA 501
            KVA +TGGA GIG   A+   + G KV + D  EE   +    + +  +  +    DV+N   + NA+ QT A  G   +M NNAG+G    TPI    +  F+ V  VNV GV  G + A
Sbjct:    5 KVALVTGGAQGIGFKIAERLVEDGFKVAVVDFNEEGAKAAALKLSSDGTKAIAIKADVSNRDDVFNAVRQTAAQFGDFHVMVNNAGLG--PTTPIDTITEEQFKTVYGVNVAGVLWGIQAA 123          
BLAST of EY665240 vs. ExPASy Swiss-Prot
Match: BUTA_STAAS (Acetoin(diacetyl) reductase OS=Staphylococcus aureus (strain MSSA476) GN=butA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.414e-12
Identity = 44/121 (36.36%), Postives = 61/121 (50.41%), Query Frame = 1
Query:  145 KVAFITGGASGIGACTAKVFAQQGAKVVIADIQEELGHSVVESIGTSNSSYV--HCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGPNKTPIIDNEKADFERVLSVNVTGVFLGFKHA 501
            KVA +TGGA GIG   A+   + G KV + D  EE   +    + +  +  +    DV+N   + NA+ QT A  G   +M NNAG+G    TPI    +  F+ V  VNV GV  G + A
Sbjct:    5 KVALVTGGAQGIGFKIAERLVEDGFKVAVVDFNEEGAKAAALKLSSDGTKAIAIKADVSNRDDVFNAVRQTAAQFGDFHVMVNNAGLG--PTTPIDTITEEQFKTVYGVNVAGVLWGIQAA 123          
BLAST of EY665240 vs. ExPASy Swiss-Prot
Match: BUTA_STAAR (Acetoin(diacetyl) reductase OS=Staphylococcus aureus (strain MRSA252) GN=butA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.414e-12
Identity = 44/121 (36.36%), Postives = 61/121 (50.41%), Query Frame = 1
Query:  145 KVAFITGGASGIGACTAKVFAQQGAKVVIADIQEELGHSVVESIGTSNSSYV--HCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGPNKTPIIDNEKADFERVLSVNVTGVFLGFKHA 501
            KVA +TGGA GIG   A+   + G KV + D  EE   +    + +  +  +    DV+N   + NA+ QT A  G   +M NNAG+G    TPI    +  F+ V  VNV GV  G + A
Sbjct:    5 KVALVTGGAQGIGFKIAERLVEDGFKVAVVDFNEEGAKAAALKLSSDGTKAIAIKADVSNRDDVFNAVRQTAAQFGDFHVMVNNAGLG--PTTPIDTITEEQFKTVYGVNVAGVLWGIQAA 123          
BLAST of EY665240 vs. ExPASy Swiss-Prot
Match: BUTA_STAAN (Acetoin(diacetyl) reductase OS=Staphylococcus aureus (strain N315) GN=butA PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.414e-12
Identity = 44/121 (36.36%), Postives = 61/121 (50.41%), Query Frame = 1
Query:  145 KVAFITGGASGIGACTAKVFAQQGAKVVIADIQEELGHSVVESIGTSNSSYV--HCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGPNKTPIIDNEKADFERVLSVNVTGVFLGFKHA 501
            KVA +TGGA GIG   A+   + G KV + D  EE   +    + +  +  +    DV+N   + NA+ QT A  G   +M NNAG+G    TPI    +  F+ V  VNV GV  G + A
Sbjct:    5 KVALVTGGAQGIGFKIAERLVEDGFKVAVVDFNEEGAKAAALKLSSDGTKAIAIKADVSNRDDVFNAVRQTAAQFGDFHVMVNNAGLG--PTTPIDTITEEQFKTVYGVNVAGVLWGIQAA 123          
BLAST of EY665240 vs. ExPASy Swiss-Prot
Match: BUTA_STAAM (Acetoin(diacetyl) reductase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=butA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.414e-12
Identity = 44/121 (36.36%), Postives = 61/121 (50.41%), Query Frame = 1
Query:  145 KVAFITGGASGIGACTAKVFAQQGAKVVIADIQEELGHSVVESIGTSNSSYV--HCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGPNKTPIIDNEKADFERVLSVNVTGVFLGFKHA 501
            KVA +TGGA GIG   A+   + G KV + D  EE   +    + +  +  +    DV+N   + NA+ QT A  G   +M NNAG+G    TPI    +  F+ V  VNV GV  G + A
Sbjct:    5 KVALVTGGAQGIGFKIAERLVEDGFKVAVVDFNEEGAKAAALKLSSDGTKAIAIKADVSNRDDVFNAVRQTAAQFGDFHVMVNNAGLG--PTTPIDTITEEQFKTVYGVNVAGVLWGIQAA 123          
BLAST of EY665240 vs. ExPASy Swiss-Prot
Match: BUTA_STAAC (Acetoin(diacetyl) reductase OS=Staphylococcus aureus (strain COL) GN=butA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.414e-12
Identity = 44/121 (36.36%), Postives = 61/121 (50.41%), Query Frame = 1
Query:  145 KVAFITGGASGIGACTAKVFAQQGAKVVIADIQEELGHSVVESIGTSNSSYV--HCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGPNKTPIIDNEKADFERVLSVNVTGVFLGFKHA 501
            KVA +TGGA GIG   A+   + G KV + D  EE   +    + +  +  +    DV+N   + NA+ QT A  G   +M NNAG+G    TPI    +  F+ V  VNV GV  G + A
Sbjct:    5 KVALVTGGAQGIGFKIAERLVEDGFKVAVVDFNEEGAKAAALKLSSDGTKAIAIKADVSNRDDVFNAVRQTAAQFGDFHVMVNNAGLG--PTTPIDTITEEQFKTVYGVNVAGVLWGIQAA 123          
The following BLAST results are available for this feature:
BLAST of EY665240 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
DHB14_HUMAN2.851e-1334.1917-beta-hydroxysteroid dehydrogenase 14 OS=Homo sa... [more]
HCD2_DROME8.296e-1335.003-hydroxyacyl-CoA dehydrogenase type-2 OS=Drosophi... [more]
DHGB_BACME1.083e-1236.36Glucose 1-dehydrogenase B OS=Bacillus megaterium G... [more]
HCD2_RAT1.415e-1233.583-hydroxyacyl-CoA dehydrogenase type-2 OS=Rattus n... [more]
BUTA_STAAW2.414e-1236.36Acetoin(diacetyl) reductase OS=Staphylococcus aure... [more]
BUTA_STAAS2.414e-1236.36Acetoin(diacetyl) reductase OS=Staphylococcus aure... [more]
BUTA_STAAR2.414e-1236.36Acetoin(diacetyl) reductase OS=Staphylococcus aure... [more]
BUTA_STAAN2.414e-1236.36Acetoin(diacetyl) reductase OS=Staphylococcus aure... [more]
BUTA_STAAM2.414e-1236.36Acetoin(diacetyl) reductase OS=Staphylococcus aure... [more]
BUTA_STAAC2.414e-1236.36Acetoin(diacetyl) reductase OS=Staphylococcus aure... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-083-F04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665240 ID=EY665240; Name=EY665240; organism=Citrus sinensis; type=EST; length=1109bp
CCACGCGTCCGTTTTTCTATAATATAATACACGCGGTGAGAAATCAACTC
TTTAGTTCCCTCTCTCTCTCTCTCTCTCTCTGACCCTCACTGCAAAATGG
CTAGCTCAGGGGTTCTTTCTGCAATCACCAGAAGGCTAGAGGGCAAGGTG
GCCTTTATTACCGGAGGGGCTAGTGGAATTGGTGCATGCACTGCAAAAGT
CTTTGCCCAACAGGGTGCCAAAGTTGTCATTGCGGATATTCAGGAAGAAT
TAGGCCATTCAGTTGTTGAATCCATAGGCACATCAAACTCATCCTATGTC
CATTGCGATGTCACAAACGAATCCCACATTAAAAATGCAATCGACCAAAC
CGTTGCAACTCATGGCAAGCTGGACATAATGTTCAACAACGCCGGCATAG
GCGGCCCTAACAAGACCCCCATAATCGACAATGAAAAGGCCGATTTCGAG
CGTGTCCTGAGTGTAAATGTCACCGGAGTTTTCTTGGGCTTCAAGCATGC
TGCTCGTGTCCTGATTCCGGGTCGCAATGGCAACATTCCTTTCAACTGCC
TAGCGGTAGCCTCCAAGGGTTGGGGCTGCTGCCTCAATAGGATAATGGTG
GGTGCAAAACAGGCGTGTTTTTAAGACACCCCCAAAAATAGGCCGGCTTG
GTGGAGCTAAGGCCAATTTGGGGAATAAGGGGGAAATTACTTGGCACCCT
TATGGTCCTTGACAACACCTTTTTGGATACACAATTTATGTTAGGGGATA
ACCAAAAAAAAGATTTAAAAAATATTTTAAAGAAAAAATACACCTGTGAA
AACATTAGAAGGTTGAAGAATTAGAAGAAACAAAAATACATTTTGAATAA
ATGCATTAGTTTTTTTTTTTTTTAGAAAGTTATAGAAGAGTAGAAAGAAT
ATAGGGGGGGAGAGGAAAATGCTACATTTTTATAATTTTTTGTGCAAGAT
AGATGGGTCATTTTCATCCTTAAGTGGATGTGTAAATCTAAATCCCACAC
CACCACACGCACTATAAAAACAAAAAAATAAGATGATGCAATTTAAGATA
TATGAGACCNCGACTATCTACCAGATCAGTTTGAAAACATTTAANCTGTA
TAATTTGAT
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