EY665240

Overview
NameEY665240
Unique NameEY665240
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1109
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY665240_ssr60 microsatellite EY665240_ssr60:60..81. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY665240 vs. ExPASy Swiss-Prot
Match: Y452_LISIN (Uncharacterized oxidoreductase Lin0452 OS=Listeria innocua GN=lin0452 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.152e-12
Identity = 44/136 (32.35%), Postives = 78/136 (57.35%), Query Frame = 1
Query:  136 LEGKVAFITGGASGIGACTAKVFAQQGAKVVIADIQEELGHSVVESIGTSNSS--YVHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGPNKTPIIDNEKADFERVLSVNVTGVFLGFKHAARVLIPGRNGNI 537
            ++ KV  ITG +SGIG  TA + A++GAK+V+A  + E    +V++I  S+    +   DVT     K  ++  +  +GK+D +F NAGI  PN +P+   ++ ++E+++ +N+ GV  G        I  ++G+I
Sbjct:    3 IKNKVIIITGASSGIGEATAILLAEKGAKLVLAARRVEKLEKIVQTIKASSGEAIFAKTDVTKREDNKKLVELAIERYGKVDAIFLNAGI-MPN-SPLSALKEDEWEQMIDINIKGVLNGIAAVLPSFIAQKSGHI 136          
BLAST of EY665240 vs. ExPASy Swiss-Prot
Match: DHMA_FLAS1 (N-acylmannosamine 1-dehydrogenase OS=Flavobacterium sp. (strain 141-8) PE=1 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 4.117e-12
Identity = 48/145 (33.10%), Postives = 73/145 (50.34%), Query Frame = 1
Query:   97 MASSGVLSAITRRLEGKVAFITGGASGIGACTAKVFAQQGAKVVIADIQEELGHSVVESIGTSNSSYVHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGPNKTPIIDNEKADFERVLSVNVTGVFLGFKHAARVLIPGRNG 531
            M ++GV S    RL GK A +TG A GIG  T + + ++GA VV  D+   L  +  E  G   +  + CD+ + + I  A+   VA  G LDI+     + G      +D   AD++R + VN+TG FL  +  AR ++    G
Sbjct:    1 MTTAGV-SRRPGRLAGKAAIVTGAAGGIGRATVEAYLREGASVVAMDLAPRLAATRYEEPG---AIPIACDLADRAAIDAAMADAVARLGGLDILVAGGALKGGTGN-FLDLSDADWDRYVDVNMTGTFLTCRAGARAMVAAGAG 140          
BLAST of EY665240 vs. ExPASy Swiss-Prot
Match: Y432_LISMO (Uncharacterized oxidoreductase Lmo0432 OS=Listeria monocytogenes GN=lmo0432 PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 5.377e-12
Identity = 43/136 (31.62%), Postives = 78/136 (57.35%), Query Frame = 1
Query:  136 LEGKVAFITGGASGIGACTAKVFAQQGAKVVIADIQEELGHSVVESI--GTSNSSYVHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGPNKTPIIDNEKADFERVLSVNVTGVFLGFKHAARVLIPGRNGNI 537
            ++ KV  ITG +SGIG  TA + A++GAK+V+A  + E    +V++I   +  + +   DVT     K  ++  +  +GK+D +F NAGI  PN +P+   ++ ++E+++ +N+ GV  G        I  ++G+I
Sbjct:    3 IKNKVIIITGASSGIGKATALLLAEKGAKLVLAARRVEKLEKIVQTIKANSGEAIFAKTDVTKREDNKKLVELAIERYGKVDAIFLNAGI-MPN-SPLSALKEDEWEQMIDINIKGVLNGIAAVLPSFIAQKSGHI 136          
BLAST of EY665240 vs. ExPASy Swiss-Prot
Match: BAIA2_EUBSP (Bile acid 7-dehydroxylase 2 OS=Eubacterium sp. (strain VPI 12708) GN=baiA2 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 5.377e-12
Identity = 46/138 (33.33%), Postives = 71/138 (51.45%), Query Frame = 1
Query:  136 LEGKVAFITGGASGIGACTAKVFAQQGAKV-VIADIQEELGHSVVESIGTSNSSYV---HCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGPNKTPIIDNEKADFERVLSVNVTGVFLGFKHAARVLIPGRNGNI 537
            ++ KV  ITGG  GIG   AK+F   GAKV +  + QEE+  ++ +         V     D+T+   +  A+ Q    +G+LD+M NNAGI   N    +  E  +F+ ++ +NVTGVF G   A + +   + G I
Sbjct:    4 VQDKVTIITGGTRGIGFAAAKIFIDNGAKVSIFGETQEEVDTALAQLKELYPEEEVLGFAPDLTSRDAVMAAVGQVAQKYGRLDVMINNAGITSNNVFSRVSEE--EFKHIMDINVTGVFNGAWCAYQCMKDAKKGVI 139          
BLAST of EY665240 vs. ExPASy Swiss-Prot
Match: YXJF_BACSU (Uncharacterized oxidoreductase yxjF OS=Bacillus subtilis GN=yxjF PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 7.023e-12
Identity = 40/133 (30.08%), Postives = 73/133 (54.89%), Query Frame = 1
Query:  145 KVAFITGGASGIGACTAKVFAQQGAKVVIADIQEELGHSVVESIGTS--NSSYVHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGPNKTPIIDNEKADFERVLSVNVTGVFLGFKHAARVLIPGRNGNI 537
            +VA +TG A GIG   A+ FA++GA V+++D++ E        +     +++ +  DVT E+ + + ++     +G+LDI+ NNAGI   +  PI +     FE+++ V +T  F+  KH   ++   + G I
Sbjct:    4 QVALVTGAAGGIGFEIAREFAREGASVIVSDLRPEACEKAASKLAEEGFDAAAIPYDVTKEAQVADTVNVIQKQYGRLDILVNNAGI--QHVAPIEEFPTDTFEQLIKVMLTAPFIAMKHVFPIMKKQQFGRI 134          
BLAST of EY665240 vs. ExPASy Swiss-Prot
Match: Y3106_PSEAE (Uncharacterized oxidoreductase PA3106 OS=Pseudomonas aeruginosa GN=PA3106 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 9.172e-12
Identity = 43/127 (33.86%), Postives = 66/127 (51.97%), Query Frame = 1
Query:  133 RLEGKVAFITGGASGIGACTAKVFAQQGAKVVIADIQEELGHSVVESIGTSNSSYVHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGPNKTPIIDNEKADFERVLSVNVTGVFLGFKHAARVL 513
            R  GKVA +TG A GIG   +     +G +VV+AD   E G  V E++G  ++ +V  DV  E  +  ++ + +   G+LD +  NA I  P  TP+      ++ R L+VN+TG  L  K+    L
Sbjct:    7 RGNGKVALVTGAARGIGLGISAWLIAEGWQVVLADNDRERGARVAEALG-EHAWFVAMDVAQEGQVAMSVAEVLGQFGRLDGLVCNAAIANPRNTPLEALSLGEWTRTLAVNLTGPMLLAKYCTPYL 132          
BLAST of EY665240 vs. ExPASy Swiss-Prot
Match: YKVO_BACSU (Uncharacterized oxidoreductase ykvO OS=Bacillus subtilis GN=ykvO PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.198e-11
Identity = 47/135 (34.81%), Postives = 67/135 (49.63%), Query Frame = 1
Query:  133 RLEGKVAFITGGASGIGACTAKVFAQQGAKVVIADIQEELGHSVVESIGTSNSSYVHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGPNKTPIIDNEKADFERVLSVNVTGVFLGFKHAARVLIPGRNGNI 537
            + EGK+A +TGG SGIG  TA+ F  +GA V I   ++      V  IG  N + V  D++    +    D      GKLDI+F NAGIG  N  P+ +  +   +R   +NV G     + A   L P + G+I
Sbjct:    3 KFEGKIALVTGGTSGIGLATAQKFVNEGAYVYITGRRQNELDKAVNQIG-KNVTGVQGDISKLEDLDKLYDIIKQEKGKLDILFANAGIG--NFLPLGEITEEQVDRTFDINVKGTIFTVQKALS-LFPDKVGSI 133          
BLAST of EY665240 vs. ExPASy Swiss-Prot
Match: Y182_METEA (Uncharacterized oxidoreductase MexAM1_META1p0182 OS=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) GN=MexAM1_META1p0182 PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 1.198e-11
Identity = 47/138 (34.06%), Postives = 73/138 (52.90%), Query Frame = 1
Query:  133 RLEGKVAFITGGASGIGACTAKVFAQQGAKVVIADIQEELG-HSVVESIGTSNSS--YVHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGPNKTPIIDNEKADFERVLSVNVTGVFLGFKHAARVLIPGRNGNI 537
            +LEGKVA +TG + GIGA  AK  A+ GA VV+     + G  +VVE+I  +      V  DV+     +  ++  V   G+LD++ NN+G+       I +  +  + R+  VNV GV L  + A++ L  G  G+I
Sbjct:    3 KLEGKVAVVTGASKGIGAAIAKALAKDGAAVVVNYASSKAGADAVVEAITAAGGKAIAVQADVSQAVQARGLVEAAVQQFGRLDVLVNNSGV--YEFAAIEEVTEEHYRRIFDVNVLGVLLATQAASKHL--GEGGSI 136          
BLAST of EY665240 vs. ExPASy Swiss-Prot
Match: HCD2_MOUSE (3-hydroxyacyl-CoA dehydrogenase type-2 OS=Mus musculus GN=Hsd17b10 PE=1 SV=4)

HSP 1 Score: 71.2478 bits (173), Expect = 1.198e-11
Identity = 45/127 (35.43%), Postives = 67/127 (52.76%), Query Frame = 1
Query:  115 LSAITRRLEGKVAFITGGASGIGACTAKVFAQQGAKVVIADIQEELGHSVVESIGTSNSSYVHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGPNKTPIIDNEK----ADFERVLSVNVTGVF 483
            ++A  R ++G VA +TGGASG    TAK    QGA  V+ D+ +  G S  + +G S   +   +VT+E  I+ A+       G++D+  N AGI    KT      K     DF+RV++VN+ G F
Sbjct:    1 MAAAVRSVKGLVAVVTGGASGPWLATAKRLVGQGATAVLLDVPDSEGESQAKKLGES-CIFAPANVTSEKEIQAALTLAKEKFGRIDVAVNCAGIAVAIKTYHQKKNKIHTLEDFQRVINVNLIGTF 126          
BLAST of EY665240 vs. ExPASy Swiss-Prot
Match: DHG2_BACSU (Glucose 1-dehydrogenase 2 OS=Bacillus subtilis GN=ycdF PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 1.198e-11
Identity = 49/146 (33.56%), Postives = 70/146 (47.95%), Query Frame = 1
Query:  136 LEGKVAFITGGASGIGACTAKVFAQQGAKVVIADIQEELGHSVVESIGTSNSSY---VHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGPNKTPIIDNEKADFERVLSVNVTGVFLGFKHAARVLIPGRNGNIPFNCLAVAS 564
            L GK A +TG + GIG   A+ F ++   VV+    +  G      I   N      V  DV+ E  I+  +D  +   G LD+M NN+G  G    P  +    D++RV+ VNVTG FLG K A   ++     NI  N L ++S
Sbjct:    5 LTGKTAIVTGSSKGIGKAIAERFGKEKMNVVVNYHSDPSGADETLEIIKQNGGKAVSVEADVSKEEGIQALLDTALEHFGTLDVMVNNSGFNGVEAMP-HEMSLEDWQRVIDVNVTGTFLGAKAALNHMM---KNNIKGNVLNISS 146          
The following BLAST results are available for this feature:
BLAST of EY665240 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
Y452_LISIN3.152e-1232.35Uncharacterized oxidoreductase Lin0452 OS=Listeria... [more]
DHMA_FLAS14.117e-1233.10N-acylmannosamine 1-dehydrogenase OS=Flavobacteriu... [more]
Y432_LISMO5.377e-1231.62Uncharacterized oxidoreductase Lmo0432 OS=Listeria... [more]
BAIA2_EUBSP5.377e-1233.33Bile acid 7-dehydroxylase 2 OS=Eubacterium sp. (st... [more]
YXJF_BACSU7.023e-1230.08Uncharacterized oxidoreductase yxjF OS=Bacillus su... [more]
Y3106_PSEAE9.172e-1233.86Uncharacterized oxidoreductase PA3106 OS=Pseudomon... [more]
YKVO_BACSU1.198e-1134.81Uncharacterized oxidoreductase ykvO OS=Bacillus su... [more]
Y182_METEA1.198e-1134.06Uncharacterized oxidoreductase MexAM1_META1p0182 O... [more]
HCD2_MOUSE1.198e-1135.433-hydroxyacyl-CoA dehydrogenase type-2 OS=Mus musc... [more]
DHG2_BACSU1.198e-1133.56Glucose 1-dehydrogenase 2 OS=Bacillus subtilis GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-083-F04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665240 ID=EY665240; Name=EY665240; organism=Citrus sinensis; type=EST; length=1109bp
CCACGCGTCCGTTTTTCTATAATATAATACACGCGGTGAGAAATCAACTC
TTTAGTTCCCTCTCTCTCTCTCTCTCTCTCTGACCCTCACTGCAAAATGG
CTAGCTCAGGGGTTCTTTCTGCAATCACCAGAAGGCTAGAGGGCAAGGTG
GCCTTTATTACCGGAGGGGCTAGTGGAATTGGTGCATGCACTGCAAAAGT
CTTTGCCCAACAGGGTGCCAAAGTTGTCATTGCGGATATTCAGGAAGAAT
TAGGCCATTCAGTTGTTGAATCCATAGGCACATCAAACTCATCCTATGTC
CATTGCGATGTCACAAACGAATCCCACATTAAAAATGCAATCGACCAAAC
CGTTGCAACTCATGGCAAGCTGGACATAATGTTCAACAACGCCGGCATAG
GCGGCCCTAACAAGACCCCCATAATCGACAATGAAAAGGCCGATTTCGAG
CGTGTCCTGAGTGTAAATGTCACCGGAGTTTTCTTGGGCTTCAAGCATGC
TGCTCGTGTCCTGATTCCGGGTCGCAATGGCAACATTCCTTTCAACTGCC
TAGCGGTAGCCTCCAAGGGTTGGGGCTGCTGCCTCAATAGGATAATGGTG
GGTGCAAAACAGGCGTGTTTTTAAGACACCCCCAAAAATAGGCCGGCTTG
GTGGAGCTAAGGCCAATTTGGGGAATAAGGGGGAAATTACTTGGCACCCT
TATGGTCCTTGACAACACCTTTTTGGATACACAATTTATGTTAGGGGATA
ACCAAAAAAAAGATTTAAAAAATATTTTAAAGAAAAAATACACCTGTGAA
AACATTAGAAGGTTGAAGAATTAGAAGAAACAAAAATACATTTTGAATAA
ATGCATTAGTTTTTTTTTTTTTTAGAAAGTTATAGAAGAGTAGAAAGAAT
ATAGGGGGGGAGAGGAAAATGCTACATTTTTATAATTTTTTGTGCAAGAT
AGATGGGTCATTTTCATCCTTAAGTGGATGTGTAAATCTAAATCCCACAC
CACCACACGCACTATAAAAACAAAAAAATAAGATGATGCAATTTAAGATA
TATGAGACCNCGACTATCTACCAGATCAGTTTGAAAACATTTAANCTGTA
TAATTTGAT
back to top