EY665240

Overview
NameEY665240
Unique NameEY665240
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1109
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY665240_ssr60 microsatellite EY665240_ssr60:60..81. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY665240 vs. ExPASy Swiss-Prot
Match: YGCW_ECOLI (Uncharacterized oxidoreductase ygcW OS=Escherichia coli (strain K12) GN=ygcW PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.564e-11
Identity = 44/136 (32.35%), Postives = 73/136 (53.68%), Query Frame = 1
Query:  136 LEGKVAFITGGASGIGACTAKVFAQQGAKVVIADIQEELGHS--VVESIGTSNSSYVHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGPNKTPIIDNEKADFERVLSVNVTGVFLGFKHAARVLIPGRNGNI 537
            L+GK A +TGG SG+G   A   A+ GA + I    ++ G +  ++E  G     ++   +T E   +  I       G +DI+ NNAGI   NK  ++D  +AD++ ++ VN+T  F     AA+++IP ++G I
Sbjct:   16 LKGKTAIVTGGNSGLGQAFAMALAKAGANIFIPSFVKDNGETKEMIEKQGV-EVDFMQVGITAEGAPQKIIAACCERFGTVDILVNNAGICKLNK--VLDFGRADWDPMIDVNLTAAFELSYEAAKIMIPQKSGKI 148          
BLAST of EY665240 vs. ExPASy Swiss-Prot
Match: RIDH_KLEAE (Ribitol 2-dehydrogenase OS=Klebsiella aerogenes GN=rbtD PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.564e-11
Identity = 48/148 (32.43%), Postives = 76/148 (51.35%), Query Frame = 1
Query:  115 LSAITRRLEGKVAFITGGASGIGACTAKVFAQQGAKVVIADIQEELGHSVVESIGTSNSSYVHCDVTNESHIKNAIDQTVATHGKLDIMFNNAG--IGGPNKTPIIDNEKADFERVLSVNVTGVFLGFKHAARVLIPGRNGNIPFNCL 552
            +S++   L GKVA ITG ASGIG   A+     GAKVV+ D + E  + +V  +G  N+  +  D+     + N +   +   G+LDI   NAG  IGG    P+ + +   ++RVL +N+   F   +     LI  ++G+I F  +
Sbjct:    5 VSSMNTSLSGKVAAITGAASGIGLECARTLLGAGAKVVLIDREGEKLNKLVAELG-ENAFALQVDLMQADQVDNLLQGILQLTGRLDIFHANAGAYIGG----PVAEGDPDVWDRVLHLNINAAFRCVRSVLPHLIAQKSGDIIFTAV 147          
BLAST of EY665240 vs. ExPASy Swiss-Prot
Match: PGDH_BOVIN (15-hydroxyprostaglandin dehydrogenase [NAD+] OS=Bos taurus GN=HPGD PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.564e-11
Identity = 44/150 (29.33%), Postives = 75/150 (50.00%), Query Frame = 1
Query:  136 LEGKVAFITGGASGIGACTAKVFAQQGAKVVIADIQEELG----HSVVESIGTSNSSYVHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGPNKTPIIDNEKADFERVLSVN----VTGVFLGFKHAARVLIPGRNGNIPFNCLAVA 561
            + GKVA +TG A GIG   A+    +GAKV + D   E G     ++ E      + ++ CDV ++  +++   + V   GKLDI+ NNAG+          N + ++E+ L +N    ++G +LG  + ++    G  G I  N  ++A
Sbjct:    3 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVKCKAALDEQFEPQKTLFIQCDVADQEQLRDTFRKVVDHFGKLDILVNNAGV----------NNEKNWEKTLQINLVSVISGTYLGLDYMSKQ--NGGEGGININMSSLA 140          
BLAST of EY665240 vs. ExPASy Swiss-Prot
Match: DHGA_BACME (Glucose 1-dehydrogenase A OS=Bacillus megaterium GN=gdhA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.564e-11
Identity = 45/131 (34.35%), Postives = 65/131 (49.62%), Query Frame = 1
Query:  136 LEGKVAFITGGASGIGACTAKVFAQQGAKVVIADIQEEL----GHSVVESIGTSNSSYVHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGPNKTPIIDNEKADFERVLSVNVTGVFLGFKHAARVLI 516
            L+ KV  ITGG++G+G   A  F Q+ AKVVI     E         VE  G   +  V  DVT E  + N +   +   G LD+M NNAG+  P   P  +    ++ +V+  N+TG FLG + A +  +
Sbjct:    5 LKDKVVVITGGSTGLGRAMAVRFGQEEAKVVINYYNNEEEALDAKKEVEEAG-GQAIIVQGDVTKEEDVVNLVQTAIKEFGTLDVMINNAGVENP--VPSHELSLDNWNKVIDTNLTGAFLGSREAIKYFV 132          
BLAST of EY665240 vs. ExPASy Swiss-Prot
Match: DHG4_BACME (Glucose 1-dehydrogenase 4 OS=Bacillus megaterium GN=gdhIV PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.564e-11
Identity = 45/131 (34.35%), Postives = 65/131 (49.62%), Query Frame = 1
Query:  136 LEGKVAFITGGASGIGACTAKVFAQQGAKVVIADIQEEL----GHSVVESIGTSNSSYVHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGPNKTPIIDNEKADFERVLSVNVTGVFLGFKHAARVLI 516
            L+ KV  ITGG++G+G   A  F Q+ AKVVI     E         VE  G   +  V  DVT E  + N +   +   G LD+M NNAG+  P   P  +    ++ +V+  N+TG FLG + A +  +
Sbjct:    5 LKDKVVVITGGSTGLGRAMAVRFGQEEAKVVINYYNNEEEALDAKKEVEEAG-GQAIIVQGDVTKEEDVVNLVQTAIKEFGTLDVMINNAGVENP--VPSHELSLDNWNKVIDTNLTGAFLGSREAIKYFV 132          
BLAST of EY665240 vs. ExPASy Swiss-Prot
Match: DHG3_BACME (Glucose 1-dehydrogenase 3 OS=Bacillus megaterium GN=gdhIII PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.564e-11
Identity = 45/131 (34.35%), Postives = 65/131 (49.62%), Query Frame = 1
Query:  136 LEGKVAFITGGASGIGACTAKVFAQQGAKVVIADIQEEL----GHSVVESIGTSNSSYVHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGPNKTPIIDNEKADFERVLSVNVTGVFLGFKHAARVLI 516
            L+ KV  ITGG++G+G   A  F Q+ AKVVI     E         VE  G   +  V  DVT E  + N +   +   G LD+M NNAG+  P   P  +    ++ +V+  N+TG FLG + A +  +
Sbjct:    5 LKDKVVVITGGSTGLGRAMAVRFGQEEAKVVINYYNNEEEALDAKKEVEEAG-GQAIIVQGDVTKEEDVVNLVQTAIKEFGTLDVMINNAGVENP--VPSHELSLDNWNKVIDTNLTGAFLGSREAIKYFV 132          
BLAST of EY665240 vs. ExPASy Swiss-Prot
Match: YUXG_BACSU (Uncharacterized oxidoreductase yuxG OS=Bacillus subtilis GN=yuxG PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 2.043e-11
Identity = 41/138 (29.71%), Postives = 74/138 (53.62%), Query Frame = 1
Query:  145 KVAFITGGASGIGACTAKVFAQQGAKVVIADIQ----EELGHSVVESIGTSNSSYVHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGPNKTPIIDNEKADFERVLSVNVTGVFLGFKHAARVL-IPGRNGNIPF 543
            KVA ITGGA GIG+   + FA +G  V++AD+     +++   + ++ G   +  V  DVT E  +++A ++    +G +DI+ NNAG+     +P  +    ++   ++V  TG FL  + A + +    R G++ F
Sbjct:  428 KVALITGGAGGIGSAACRRFAAEGGHVIVADLNIEGAQKIAGEINDAYGKGRAMAVKMDVTKEEDVQSAFERAALAYGGIDIVVNNAGLA--TSSPFDETSLKEWNLNMNVLGTGYFLVAREAFKQMKHQNRGGSMVF 563          
BLAST of EY665240 vs. ExPASy Swiss-Prot
Match: Y1385_MYCBO (Uncharacterized oxidoreductase Mb1385 OS=Mycobacterium bovis GN=fabG2 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.043e-11
Identity = 46/145 (31.72%), Postives = 74/145 (51.03%), Query Frame = 1
Query:  136 LEGKVAFITGGASGIGACTAKVFAQQGAKVVIADIQEELGHSVVESIGTSNSSY-VHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGPNKTPIIDNEKADFERVLSVNVTGVFLGFKHAARVLIPGRNGNIPFNCLAVASK 567
            L  + A ITGGA G+G    + F  +GA+VV+ D+  E      + +G  + +  V CDVT    +   I   V   G LD+M NNAGI        +  E+  F++V++V++ G + G + AA ++   + G I  N  +V+ K
Sbjct:    5 LNARTAVITGGAQGLGLAIGQRFVAEGARVVLGDVNLEATEVAAKRLGGDDVALAVRCDVTQADDVDILIRTAVERFGGLDVMVNNAGITRDATMRTMTEEQ--FDQVIAVHLKGTWNGTRLAAAIMRERKRGAI-VNMSSVSGK 146          
BLAST of EY665240 vs. ExPASy Swiss-Prot
Match: Y1350_MYCTU (Uncharacterized oxidoreductase Rv1350/MT1393 OS=Mycobacterium tuberculosis GN=fabG2 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.043e-11
Identity = 46/145 (31.72%), Postives = 74/145 (51.03%), Query Frame = 1
Query:  136 LEGKVAFITGGASGIGACTAKVFAQQGAKVVIADIQEELGHSVVESIGTSNSSY-VHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGPNKTPIIDNEKADFERVLSVNVTGVFLGFKHAARVLIPGRNGNIPFNCLAVASK 567
            L  + A ITGGA G+G    + F  +GA+VV+ D+  E      + +G  + +  V CDVT    +   I   V   G LD+M NNAGI        +  E+  F++V++V++ G + G + AA ++   + G I  N  +V+ K
Sbjct:    5 LNARTAVITGGAQGLGLAIGQRFVAEGARVVLGDVNLEATEVAAKRLGGDDVALAVRCDVTQADDVDILIRTAVERFGGLDVMVNNAGITRDATMRTMTEEQ--FDQVIAVHLKGTWNGTRLAAAIMRERKRGAI-VNMSSVSGK 146          
BLAST of EY665240 vs. ExPASy Swiss-Prot
Match: LIGD_PSEPA (C alpha-dehydrogenase OS=Pseudomonas paucimobilis GN=ligD PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.669e-11
Identity = 48/137 (35.04%), Postives = 70/137 (51.09%), Query Frame = 1
Query:  139 EGKVAFITGGASGIGACTAKVFAQQGAKVVIADIQEELGHSVV---ESIGTSNSSYVHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGPNKTPIIDNEKADFERVLSVNVTGVFLGF-KHAARVLIPGRNGNI 537
            + +VAFITGGASG G   AKVF Q GAK+V+AD++ E     V   E +G +    V  D+ +      A D+  A  G+   + +N   G  +  PI      DF+ ++ VN+ GV  G      R++  GR G+I
Sbjct:    5 QDQVAFITGGASGAGFGQAKVFGQAGAKIVVADVRAEAVEKAVAELEGLGITAHGIV-LDIMDREAYARAADEVEAVFGQAPTLLSNTA-GVNSFGPIEKTTYDDFDWIIGVNLNGVINGMVTFVPRMIASGRPGHI 139          
The following BLAST results are available for this feature:
BLAST of EY665240 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
YGCW_ECOLI1.564e-1132.35Uncharacterized oxidoreductase ygcW OS=Escherichia... [more]
RIDH_KLEAE1.564e-1132.43Ribitol 2-dehydrogenase OS=Klebsiella aerogenes GN... [more]
PGDH_BOVIN1.564e-1129.3315-hydroxyprostaglandin dehydrogenase [NAD+] OS=Bo... [more]
DHGA_BACME1.564e-1134.35Glucose 1-dehydrogenase A OS=Bacillus megaterium G... [more]
DHG4_BACME1.564e-1134.35Glucose 1-dehydrogenase 4 OS=Bacillus megaterium G... [more]
DHG3_BACME1.564e-1134.35Glucose 1-dehydrogenase 3 OS=Bacillus megaterium G... [more]
YUXG_BACSU2.043e-1129.71Uncharacterized oxidoreductase yuxG OS=Bacillus su... [more]
Y1385_MYCBO2.043e-1131.72Uncharacterized oxidoreductase Mb1385 OS=Mycobacte... [more]
Y1350_MYCTU2.043e-1131.72Uncharacterized oxidoreductase Rv1350/MT1393 OS=My... [more]
LIGD_PSEPA2.669e-1135.04C alpha-dehydrogenase OS=Pseudomonas paucimobilis ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-083-F04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665240 ID=EY665240; Name=EY665240; organism=Citrus sinensis; type=EST; length=1109bp
CCACGCGTCCGTTTTTCTATAATATAATACACGCGGTGAGAAATCAACTC
TTTAGTTCCCTCTCTCTCTCTCTCTCTCTCTGACCCTCACTGCAAAATGG
CTAGCTCAGGGGTTCTTTCTGCAATCACCAGAAGGCTAGAGGGCAAGGTG
GCCTTTATTACCGGAGGGGCTAGTGGAATTGGTGCATGCACTGCAAAAGT
CTTTGCCCAACAGGGTGCCAAAGTTGTCATTGCGGATATTCAGGAAGAAT
TAGGCCATTCAGTTGTTGAATCCATAGGCACATCAAACTCATCCTATGTC
CATTGCGATGTCACAAACGAATCCCACATTAAAAATGCAATCGACCAAAC
CGTTGCAACTCATGGCAAGCTGGACATAATGTTCAACAACGCCGGCATAG
GCGGCCCTAACAAGACCCCCATAATCGACAATGAAAAGGCCGATTTCGAG
CGTGTCCTGAGTGTAAATGTCACCGGAGTTTTCTTGGGCTTCAAGCATGC
TGCTCGTGTCCTGATTCCGGGTCGCAATGGCAACATTCCTTTCAACTGCC
TAGCGGTAGCCTCCAAGGGTTGGGGCTGCTGCCTCAATAGGATAATGGTG
GGTGCAAAACAGGCGTGTTTTTAAGACACCCCCAAAAATAGGCCGGCTTG
GTGGAGCTAAGGCCAATTTGGGGAATAAGGGGGAAATTACTTGGCACCCT
TATGGTCCTTGACAACACCTTTTTGGATACACAATTTATGTTAGGGGATA
ACCAAAAAAAAGATTTAAAAAATATTTTAAAGAAAAAATACACCTGTGAA
AACATTAGAAGGTTGAAGAATTAGAAGAAACAAAAATACATTTTGAATAA
ATGCATTAGTTTTTTTTTTTTTTAGAAAGTTATAGAAGAGTAGAAAGAAT
ATAGGGGGGGAGAGGAAAATGCTACATTTTTATAATTTTTTGTGCAAGAT
AGATGGGTCATTTTCATCCTTAAGTGGATGTGTAAATCTAAATCCCACAC
CACCACACGCACTATAAAAACAAAAAAATAAGATGATGCAATTTAAGATA
TATGAGACCNCGACTATCTACCAGATCAGTTTGAAAACATTTAANCTGTA
TAATTTGAT
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