EY665240

Overview
NameEY665240
Unique NameEY665240
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1109
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY665240_ssr60 microsatellite EY665240_ssr60:60..81. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY665240 vs. ExPASy Swiss-Prot
Match: EPHD_MYCTU (Probable oxidoreductase ephD OS=Mycobacterium tuberculosis GN=ephD PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.669e-11
Identity = 52/163 (31.90%), Postives = 82/163 (50.31%), Query Frame = 1
Query:   94 KMASSGVLSAITRRLEG----KVAFITGGASGIGACTAKVFAQQGAKVVIADIQE-ELGHSVVESIGTSNSSYVH-CDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGPNKTPIIDNEKADFERVLSVNVTGVFLGFKHAARVLIPGRNGNIPFNCLAVAS 564
            K  S  +L A   R  G     +  +TG  SGIG  TA  FA++GA++VI+DI E  +  +  E       +Y +  DV++   ++   ++  A HG  DI+ NNAGIG   +   +D     F+RVL+VN+ GV  G +   + L+    G    N  ++A+
Sbjct:  304 KQPSRALLRAQVGRPRGYFGDTLVSVTGAGSGIGRETALAFAREGAEIVISDIDEATVKDTAAEIAARGGIAYPYVLDVSDAEAVEAFAERVSAEHGVPDIVVNNAGIGQAGR--FLDTPAEQFDRVLAVNLGGVVNGCRAFGQRLVERGTGGHIVNVSSMAA 464          
BLAST of EY665240 vs. ExPASy Swiss-Prot
Match: EPHD_MYCBO (Probable oxidoreductase ephD OS=Mycobacterium bovis GN=ephD PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.669e-11
Identity = 52/163 (31.90%), Postives = 82/163 (50.31%), Query Frame = 1
Query:   94 KMASSGVLSAITRRLEG----KVAFITGGASGIGACTAKVFAQQGAKVVIADIQE-ELGHSVVESIGTSNSSYVH-CDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGPNKTPIIDNEKADFERVLSVNVTGVFLGFKHAARVLIPGRNGNIPFNCLAVAS 564
            K  S  +L A   R  G     +  +TG  SGIG  TA  FA++GA++VI+DI E  +  +  E       +Y +  DV++   ++   ++  A HG  DI+ NNAGIG   +   +D     F+RVL+VN+ GV  G +   + L+    G    N  ++A+
Sbjct:  304 KQPSRALLRAQVGRPRGYFGDTLVSVTGAGSGIGRETALAFAREGAEIVISDIDEATVKDTAAEIAARGGIAYPYVLDVSDAEAVEAFAERVSAEHGVPDIVVNNAGIGQAGR--FLDTPAEQFDRVLAVNLGGVVNGCRAFGQRLVERGTGGHIVNVSSMAA 464          
BLAST of EY665240 vs. ExPASy Swiss-Prot
Match: DHBA_BACSU (2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase OS=Bacillus subtilis GN=dhbA PE=1 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 2.669e-11
Identity = 44/136 (32.35%), Postives = 68/136 (50.00%), Query Frame = 1
Query:  136 LEGKVAFITGGASGIGACTAKVFAQQGAKVVIADIQEELGHSVVESIGTS--NSSYVHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGPNKTPIIDNEKADFERVLSVNVTGVFLGFKHAARVLIPGRNGNI 537
            +EGK+AFITG A GIG   A+  A QGA +   D   E    VV S+     ++     DV + + I     +     G +DI+ N AG+  P     + +E  ++E   SVN TGVF   +  ++ ++  R+G+I
Sbjct:    6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEGRHAEAFPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDE--EWEATFSVNSTGVFNASRSVSKYMMDRRSGSI 139          
BLAST of EY665240 vs. ExPASy Swiss-Prot
Match: LIMC_RHOER ((-)-trans-carveol dehydrogenase OS=Rhodococcus erythropolis GN=limC PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 3.485e-11
Identity = 51/169 (30.18%), Postives = 87/169 (51.48%), Query Frame = 1
Query:  133 RLEGKVAFITGGASGIGACTAKVFAQQGAKVVIADIQE---ELGHSV------------VESIGTSNSSYVHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGPNKTPIIDNEKAD--FERVLSVNVTGVFLGFKHAARVLIP-----GRNGNIPFNCLAVASKGW 573
            R+EG+VA ITG A G G   A   A++GA V++ D+     ++G+ +            VE++G   +  +H DV +   +   +D+ V+T G+LDI+  NAGI      P + ++  D  + +++ +N+TGV+    H A+V +P      R G+I     A   KG+
Sbjct:    3 RVEGQVALITGAARGQGRSHAIKLAEEGADVILVDVPNDVVDIGYPLGTADELDQTAKDVENLG-RKAIVIHADVRDLESLTAEVDRAVSTLGRLDIVSANAGIA---SVPFLSHDIPDNTWRQMIDINLTGVW----HTAKVAVPHILAGERGGSIVLTSSAAGLKGY 163          
BLAST of EY665240 vs. ExPASy Swiss-Prot
Match: DHG2_BACME (Glucose 1-dehydrogenase 2 OS=Bacillus megaterium GN=gdhII PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 3.485e-11
Identity = 43/130 (33.08%), Postives = 66/130 (50.77%), Query Frame = 1
Query:  136 LEGKVAFITGGASGIGACTAKVFAQQGAKVVIA-DIQEELGHSVVESIGTSNSS--YVHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGPNKTPIIDNEKADFERVLSVNVTGVFLGFKHAARVLI 516
            L+ KV  +TGG+ G+G   A  F Q+ +KVV+     EE    V + I  +      V  DVT E  + N ++  V   G LD+M NNAG+  P   P  +    ++ +V+  N+TG FLG + A +  +
Sbjct:    5 LKDKVVVVTGGSKGLGRAMAVRFGQEQSKVVVNYRSNEEEALEVKKEIEEAGGQAIIVRGDVTKEEDVVNLVETAVKEFGSLDVMINNAGVENP--VPSHELSLENWNQVIDTNLTGAFLGSREAIKYFV 132          
BLAST of EY665240 vs. ExPASy Swiss-Prot
Match: Y0585_STAHJ (Uncharacterized oxidoreductase SH0585 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=SH0585 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 4.552e-11
Identity = 38/115 (33.04%), Postives = 63/115 (54.78%), Query Frame = 1
Query:  136 LEGKVAFITGGASGIGACTAKVFAQQGAKVVIADIQEELGHSVVESIGTSNSSYVHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGPNKTPIIDNEKADFERVLSVNVTGV 480
            L G+VA ITG +SGIGA TAK   +QG KVV+A    +  +++ + +   N   V  DVTN+  +   + + +   G +DI  N AG+   +K  I D +   ++ ++  N+ G+
Sbjct:    4 LNGRVAIITGASSGIGAATAKALEKQGVKVVLAGRSHDKLNTLAKDMNEDNIHIVPTDVTNQVEVDALVAKVIDVFGHVDIFVNCAGVMRSSK--ITDYQVESWDSMVDTNIKGL 116          
BLAST of EY665240 vs. ExPASy Swiss-Prot
Match: UCPA_SALTY (Oxidoreductase ucpA OS=Salmonella typhimurium GN=ucpA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 4.552e-11
Identity = 43/136 (31.62%), Postives = 72/136 (52.94%), Query Frame = 1
Query:  133 RLEGKVAFITGGASGIGACTAKVFAQQGAKVVIADIQEELGHSVVESIGTSN-SSYVHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGPNKTPIIDNEKADFERVLSVNVTGVFLGFKHAARVLIPGRNGNI 537
            +L GK A ITG + GIG   A+VFA+ GA +++ DI +E+     E  G  +  + V  DV + + ++ A+ +   T G++DI+ NNAG+        +  E  DF   + +N+ GV+   K     +I  ++G I
Sbjct:    3 KLTGKTALITGASQGIGEGIARVFARHGANLILLDISDEIEKLADELGGRGHRCTAVKADVRDFASVQAAVARAKETEGRIDILVNNAGVCRLGNFLDMSEEDRDFH--IDINIKGVWNVTKAVLPEMIKRKDGRI 136          
BLAST of EY665240 vs. ExPASy Swiss-Prot
Match: UCPA_SALTI (Oxidoreductase ucpA OS=Salmonella typhi GN=ucpA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 4.552e-11
Identity = 43/136 (31.62%), Postives = 72/136 (52.94%), Query Frame = 1
Query:  133 RLEGKVAFITGGASGIGACTAKVFAQQGAKVVIADIQEELGHSVVESIGTSN-SSYVHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGPNKTPIIDNEKADFERVLSVNVTGVFLGFKHAARVLIPGRNGNI 537
            +L GK A ITG + GIG   A+VFA+ GA +++ DI +E+     E  G  +  + V  DV + + ++ A+ +   T G++DI+ NNAG+        +  E  DF   + +N+ GV+   K     +I  ++G I
Sbjct:    3 KLTGKTALITGASQGIGEGIARVFARHGANLILLDISDEIEKLADELGGRGHRCTAVKADVRDFASVQAAVARAKETEGRIDILVNNAGVCRLGNFLDMSEEDRDFH--IDINIKGVWNVTKAVLPEMIKRKDGRI 136          
BLAST of EY665240 vs. ExPASy Swiss-Prot
Match: PGDH_MACFA (15-hydroxyprostaglandin dehydrogenase [NAD+] OS=Macaca fascicularis GN=HPGD PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 4.552e-11
Identity = 43/150 (28.67%), Postives = 75/150 (50.00%), Query Frame = 1
Query:  136 LEGKVAFITGGASGIGACTAKVFAQQGAKVVIADIQEELG----HSVVESIGTSNSSYVHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGPNKTPIIDNEKADFERVLSVN----VTGVFLGFKHAARVLIPGRNGNIPFNCLAVA 561
            + GKVA +TG A GIG   A+    +GAKV + D   E G     ++ E      + ++ CDV ++  +++   + V   G+LDI+ NNAG+          N + ++E+ L +N    ++G +LG  + ++    G  G I  N  ++A
Sbjct:    3 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALDEKFEPQKTLFIQCDVADQQQLRDTFRKVVDHFGRLDILVNNAGV----------NNEKNWEKTLQINLVSVISGTYLGLDYMSKQ--NGGEGGIIINMSSLA 140          
BLAST of EY665240 vs. ExPASy Swiss-Prot
Match: PGDH_HUMAN (15-hydroxyprostaglandin dehydrogenase [NAD+] OS=Homo sapiens GN=HPGD PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 4.552e-11
Identity = 43/150 (28.67%), Postives = 75/150 (50.00%), Query Frame = 1
Query:  136 LEGKVAFITGGASGIGACTAKVFAQQGAKVVIADIQEELG----HSVVESIGTSNSSYVHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGPNKTPIIDNEKADFERVLSVN----VTGVFLGFKHAARVLIPGRNGNIPFNCLAVA 561
            + GKVA +TG A GIG   A+    +GAKV + D   E G     ++ E      + ++ CDV ++  +++   + V   G+LDI+ NNAG+          N + ++E+ L +N    ++G +LG  + ++    G  G I  N  ++A
Sbjct:    3 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALDEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFGRLDILVNNAGV----------NNEKNWEKTLQINLVSVISGTYLGLDYMSKQ--NGGEGGIIINMSSLA 140          
The following BLAST results are available for this feature:
BLAST of EY665240 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
EPHD_MYCTU2.669e-1131.90Probable oxidoreductase ephD OS=Mycobacterium tube... [more]
EPHD_MYCBO2.669e-1131.90Probable oxidoreductase ephD OS=Mycobacterium bovi... [more]
DHBA_BACSU2.669e-1132.352,3-dihydro-2,3-dihydroxybenzoate dehydrogenase OS... [more]
LIMC_RHOER3.485e-1130.18(-)-trans-carveol dehydrogenase OS=Rhodococcus ery... [more]
DHG2_BACME3.485e-1133.08Glucose 1-dehydrogenase 2 OS=Bacillus megaterium G... [more]
Y0585_STAHJ4.552e-1133.04Uncharacterized oxidoreductase SH0585 OS=Staphyloc... [more]
UCPA_SALTY4.552e-1131.62Oxidoreductase ucpA OS=Salmonella typhimurium GN=u... [more]
UCPA_SALTI4.552e-1131.62Oxidoreductase ucpA OS=Salmonella typhi GN=ucpA PE... [more]
PGDH_MACFA4.552e-1128.6715-hydroxyprostaglandin dehydrogenase [NAD+] OS=Ma... [more]
PGDH_HUMAN4.552e-1128.6715-hydroxyprostaglandin dehydrogenase [NAD+] OS=Ho... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-083-F04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665240 ID=EY665240; Name=EY665240; organism=Citrus sinensis; type=EST; length=1109bp
CCACGCGTCCGTTTTTCTATAATATAATACACGCGGTGAGAAATCAACTC
TTTAGTTCCCTCTCTCTCTCTCTCTCTCTCTGACCCTCACTGCAAAATGG
CTAGCTCAGGGGTTCTTTCTGCAATCACCAGAAGGCTAGAGGGCAAGGTG
GCCTTTATTACCGGAGGGGCTAGTGGAATTGGTGCATGCACTGCAAAAGT
CTTTGCCCAACAGGGTGCCAAAGTTGTCATTGCGGATATTCAGGAAGAAT
TAGGCCATTCAGTTGTTGAATCCATAGGCACATCAAACTCATCCTATGTC
CATTGCGATGTCACAAACGAATCCCACATTAAAAATGCAATCGACCAAAC
CGTTGCAACTCATGGCAAGCTGGACATAATGTTCAACAACGCCGGCATAG
GCGGCCCTAACAAGACCCCCATAATCGACAATGAAAAGGCCGATTTCGAG
CGTGTCCTGAGTGTAAATGTCACCGGAGTTTTCTTGGGCTTCAAGCATGC
TGCTCGTGTCCTGATTCCGGGTCGCAATGGCAACATTCCTTTCAACTGCC
TAGCGGTAGCCTCCAAGGGTTGGGGCTGCTGCCTCAATAGGATAATGGTG
GGTGCAAAACAGGCGTGTTTTTAAGACACCCCCAAAAATAGGCCGGCTTG
GTGGAGCTAAGGCCAATTTGGGGAATAAGGGGGAAATTACTTGGCACCCT
TATGGTCCTTGACAACACCTTTTTGGATACACAATTTATGTTAGGGGATA
ACCAAAAAAAAGATTTAAAAAATATTTTAAAGAAAAAATACACCTGTGAA
AACATTAGAAGGTTGAAGAATTAGAAGAAACAAAAATACATTTTGAATAA
ATGCATTAGTTTTTTTTTTTTTTAGAAAGTTATAGAAGAGTAGAAAGAAT
ATAGGGGGGGAGAGGAAAATGCTACATTTTTATAATTTTTTGTGCAAGAT
AGATGGGTCATTTTCATCCTTAAGTGGATGTGTAAATCTAAATCCCACAC
CACCACACGCACTATAAAAACAAAAAAATAAGATGATGCAATTTAAGATA
TATGAGACCNCGACTATCTACCAGATCAGTTTGAAAACATTTAANCTGTA
TAATTTGAT
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