CX043662

Overview
NameCX043662
Unique NameCX043662
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length756
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX043662_ssr522 microsatellite CX043662_ssr522:522..531. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig161 contig Csv1_Contig161:408..1163. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043662 vs. ExPASy Swiss-Prot
Match: ATPO_SORAR (ATP synthase subunit O, mitochondrial OS=Sorex araneus GN=ATP5O PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.134e-11
Identity = 38/124 (30.65%), Postives = 62/124 (50.00%), Query Frame = -2
Query:  357 RVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXLXXXXXXXXXXXVDPSILGGLVVEFGQKVFDMSIKSRARQMERFLRE 728
            +VK+I ++  + K S +T + + +LAENGRL N   I   F  +   H+GEV  TVT+                   L            DPSI+GG++V  G+K  DMS +++ +++ + +RE
Sbjct:   88 KVKSIGDLTAREKLSPITTNLINLLAENGRLNNTPGIISAFSTMMSVHRGEVPCTVTTASALPEATLSELKTVLQSFLSKNQVLKLEVKTDPSIMGGMIVRIGEKYVDMSARTKIQKLSKAMRE 211          
BLAST of CX043662 vs. ExPASy Swiss-Prot
Match: ATPO_PIG (ATP synthase subunit O, mitochondrial OS=Sus scrofa GN=ATP5O PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.134e-11
Identity = 39/129 (30.23%), Postives = 66/129 (51.16%), Query Frame = -2
Query:  357 VPAETRVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXLXXXXXXXXXXXVDPSILGGLVVEFGQKVFDMSIKSRARQMERFLRE 743
            V    +VK+++++  + KFS +T + + +LAENGRL +   +   F  +   H+GEV  +VT+                   L           VDPSI+GG++V  G+K  DMS K++ +++ R +RE
Sbjct:   83 VKRSVKVKSLSDMTAKEKFSPLTSNLINLLAENGRLSSTPGVISAFSTMMSVHRGEVPCSVTTASPLDEATLTELKTVLKSFLSKGQILKLEVKVDPSIMGGMIVRIGEKYVDMSAKTKIQKLSRAMRE 211          
The following BLAST results are available for this feature:
BLAST of CX043662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
ATPO_SORAR1.134e-1130.65ATP synthase subunit O, mitochondrial OS=Sorex ara... [more]
ATPO_PIG1.134e-1130.23ATP synthase subunit O, mitochondrial OS=Sus scrof... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_12F07_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-12F07-K14-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043662 ID=CX043662; Name=CX043662; organism=Citrus sinensis; type=EST; length=756bp
TTTTTTTTCATAAAAAGAGCTTTTGTCCTTGAGAACCGTATCATGTGCAG
GACCGAGTAATTATTTGAACAAACAAATTATACCCTTAAAAGATAATGGT
CCGAACCGAAACCCAAACAAAAAATGTTGATGTCCATCAAAACCATTTGC
CATGAAAGCAAAGTGATCAAGATGTGAATTTTATTTTGCCAATGATTCAA
TTCATTCAGAAATGGCGGAGCACAAGCAAACAGCATCAAACAAGAGCTTG
AATGGTTCTTTTACTTCTTGGAGCGTTCCAGTTGTTGCATAATCATCTTA
AAAATTTGCGCCCTGGGGCTGTGGCAGCCTTTTTAGAGGGTGCCAAAATG
AATGGGCTCACGTAGGAACCTCTCCATCTGCCGCGCCCTAGACTTAATGG
ACATGTCAAACACCTTTTGCCCAAACTCTACTACGAGCCCACCAAGAATG
CTAGGATCAACCTTCTGTTCAACCTTGACTTTCTTCCCTTGGCCAAGTGT
CTCTTGCAGTGTCTCTTTCAACTCTCTCTCTTCTTCTGGGGGAAGTGGAA
TAACGGATGTAACAGTAACTTTTACTTCGCCCTTGTGTGCCATGGTTAAC
TCCACAAACCTCTTAGCGATGGTGTCTAAGTTTCTAAGCCTCCCATTCTC
AGCCAAAACAACTAAGAAGTGCTTCGTAACATCTGAAAATTTAGCCTGAG
TACAGATTTCGTTAATGGCCTTAACTCTTGTCTCTGCAGGCACAGACAAG
TCCTTT
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