EY665226

Overview
NameEY665226
Unique NameEY665226
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1008
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665226 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 7.677e-39
Identity = 89/150 (59.33%), Postives = 104/150 (69.33%), Query Frame = 2
Query:  104 APSGNEL-----SNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARKRSQVR*GCVVQGGKLKSFSEGGLD*LGKTKAWIPRPKSILAFGA 538
            AP  +EL      +GGRI+MR+T   +  S   WYGPDR KYLGP S + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPE+L++   +       + G  + FSEGGLD LG     +   +SILA  A
Sbjct:   16 APRRDELVRRVGDSGGRITMRRTVKSAPQS--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAG-AQIFSEGGLDYLGNPN--LVHAQSILAIWA 160          
BLAST of EY665226 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 1.003e-38
Identity = 85/137 (62.04%), Postives = 98/137 (71.53%), Query Frame = 2
Query:  128 NGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARKRSQVR*GCVVQGGKLKSFSEGGLD*LGKTKAWIPRPKSILAFGA 538
            NGGR +MR+T   +  S   WYG DR KYLGP S + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPE+L++   +       + G  + FSEGGLD LG     +   +SILA  A
Sbjct:   31 NGGRATMRRTVKSAPQS--IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGS-QIFSEGGLDYLGNPN--LIHAQSILAVWA 162          
BLAST of EY665226 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.710e-38
Identity = 92/159 (57.86%), Postives = 106/159 (66.67%), Query Frame = 2
Query:   80 FVGKAVNLAPSGNELSNG------GRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARKRSQVR*GCVVQGGKLKSFSEGGLD*LGKTKAWIPRPKSILAFGA 538
            FVG+AV    S NE          GRI+MR+T   +  S   WYG DR KYLGP S + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPE+L++   +       + G  + FSEGGLD LG     +   +SILA  A
Sbjct:   11 FVGQAVG--KSQNEFIRKVGNFGEGRITMRRTVKSAPQS--IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGS-QIFSEGGLDYLGNPN--LVHAQSILAIWA 162          
BLAST of EY665226 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 2.234e-38
Identity = 84/136 (61.76%), Postives = 97/136 (71.32%), Query Frame = 2
Query:  131 GGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARKRSQVR*GCVVQGGKLKSFSEGGLD*LGKTKAWIPRPKSILAFGA 538
            GGR++MR+T   +  S   WYG DR KYLGP S + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPE+L++           + G  + FSEGGLD LG     +   +SILA  A
Sbjct:    4 GGRVTMRRTVKSAPQS--IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGS-QIFSEGGLDYLGNPN--LIHAQSILAIWA 134          
BLAST of EY665226 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 6.499e-38
Identity = 84/136 (61.76%), Postives = 96/136 (70.59%), Query Frame = 2
Query:  131 GGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARKRSQVR*GCVVQGGKLKSFSEGGLD*LGKTKAWIPRPKSILAFGA 538
            GGR +MR+T   +  S   WYG DR KYLGP S + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPE+L++           + G  + FSEGGLD LG     +   +SILA  A
Sbjct:   32 GGRATMRRTVKSAPQS--IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGS-QIFSEGGLDYLGNPN--LIHAQSILAIWA 162          
BLAST of EY665226 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.448e-37
Identity = 82/134 (61.19%), Postives = 96/134 (71.64%), Query Frame = 2
Query:  137 RISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARKRSQVR*GCVVQGGKLKSFSEGGLD*LGKTKAWIPRPKSILAFGA 538
            R++MR+T SKS  S + WYG DR K+LGP SGE PSYL GEF GDYGWDTAGLS+DPETFA+NRELEVIH RWAMLGALGC+ PELLA+   +       + G  + FSEGGLD LG     +   +SILA  A
Sbjct:   35 RVTMRRTVSKSAGSDTIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAG-AQIFSEGGLDYLGNPS--LVHAQSILAIWA 165          
BLAST of EY665226 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 2.470e-37
Identity = 89/151 (58.94%), Postives = 100/151 (66.23%), Query Frame = 2
Query:  101 LAPSGNEL-----SNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARKRSQVR*GCVVQGGKLKSFSEGGLD*LGKTKAWIPRPKSILAFGA 538
            L P  NEL     +   RI+MR+T   +  S   WYGPDR KYLGP S   PSYLTGEFPGDYGWDTA +SADPETFAKNRELEVIHCRWAMLGALGCVFPELLA+   +       + G  + FSEGGLD  G     +   +SILA  A
Sbjct:   18 LRPQQNELVKKVGTAQARITMRRTVRSAPES--IWYGPDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGLKFGEAVWFKAG-AQIFSEGGLDYAGNPN--LIHAQSILAIWA 163          
BLAST of EY665226 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 3.225e-37
Identity = 86/135 (63.70%), Postives = 97/135 (71.85%), Query Frame = 2
Query:  134 GRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARKRSQVR*GCVVQGGKLKSFSEGGLD*LGKTKAWIPRPKSILAFGA 538
            GR SMR+T  K+V   S WYG DR K+LGP S + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGC+FPELL++   Q       + G  + FSEGGLD LG     +   +SILA  A
Sbjct:   32 GRFSMRRT-VKAVPQ-SIWYGADRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQFGEAVWFKAG-AQIFSEGGLDYLGNPN--LVHAQSILAIWA 161          
BLAST of EY665226 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 5.502e-37
Identity = 88/146 (60.27%), Postives = 98/146 (67.12%), Query Frame = 2
Query:  116 NELSNG-----GRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARKRSQVR*GCVVQGGKLKSFSEGGLD*LGKTKAWIPRPKSILAFGA 538
            NELS        R+ M    SK+  SGS WYG DR  YLGP SG PPSYL+GEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCV PELLA+   +       + G  + F+EGGLD LG     +   +SILA  A
Sbjct:   21 NELSRKVGAGEARVQMMAPKSKA-PSGSIWYGSDRPLYLGPFSGSPPSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKAGS-QIFAEGGLDYLGNPS--LVHAQSILAIWA 162          
BLAST of EY665226 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.355e-35
Identity = 81/134 (60.45%), Postives = 93/134 (69.40%), Query Frame = 2
Query:  137 RISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARKRSQVR*GCVVQGGKLKSFSEGGLD*LGKTKAWIPRPKSILAFGA 538
            R +MR+T   +  S   WYGPDR KYLGP S + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGC FPELL +   +       + G  + F+EGGLD LG     +   +SILA  A
Sbjct:   34 RFTMRRTVKSAPES--IWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKFGEAVWFKAGS-QIFAEGGLDYLGNPN--LIHAQSILAIWA 162          
The following BLAST results are available for this feature:
BLAST of EY665226 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
CB23_ORYSI7.677e-3959.33Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_TOBAC1.003e-3862.04Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB24_SOLLC1.710e-3857.86Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB25_SOLLC2.234e-3861.76Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB26_PETSP6.499e-3861.76Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB2_PHYPA1.448e-3761.19Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_PINTH2.470e-3758.94Chlorophyll a-b binding protein type I, chloroplas... [more]
CB21_LEMGI3.225e-3763.70Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_POLMU5.502e-3760.27Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB215_PEA1.355e-3560.45Chlorophyll a-b binding protein 215, chloroplastic... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-083-E01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665226 ID=EY665226; Name=EY665226; organism=Citrus sinensis; type=EST; length=1008bp
AGCTTCTATTGCTTACCCAGCTTCTGCTTCTCAATTAAATTCCTCAATGG
CAACCTCAACAATGGCTCTCTCCTCATCATTCGTCGGCAAGGCCGTGAAC
CTCGCCCCTTCAGGCAATGAGCTGAGCAATGGTGGCCGCATCTCCATGCG
TAAAACCGGGAGCAAGTCTGTTTCTTCAGGTAGCCCGTGGTACGGCCCGG
ACAGAGTCAAGTACTTGGGCCCACTCTCTGGCGAGCCCCCAAGCTACTTG
ACTGGTGAGTTCCCTGGCGACTACGGTTGGGACACTGCCGGGCTTTCAGC
TGACCCAGAAACCTTTGCCAAGAACCGTGAACTCGAAGTCATCCACTGCA
GATGGGCCATGTTGGGAGCTCTTGGATGCGTCTTCCCGGAGCTCTTGGCC
CGCAAACGGAGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCGGGAAGCT
CAAATCTTTCAGCGAGGGCGGGCTTGACTAACTTGGGAAAACCAAAGCTT
GGATTCCACGCCCAAAAAGCATCTTGGCCTTCGGGGCTTGGCCAGGTGGA
TCTTGATGGGGAAGCCTATGAAGGTTAAATAAATTGGCGGGAGGGGGCCG
TTTCGGTGAAAATTGAATGAACCCATTGTAACACCAAGTGGATAACTTTG
AACCCATTTGGGGATTGGGGATGAAAAAACCCGAAAGGTTTTTTGTTAAA
TCCTCAAAAGGATAAAGGAATACACAATAAATGGAAGGGTTTGGAAAAGG
ATTCCTCCATGTATTGGTTTTAAAACGAATAAAAAAAGAAAAGGATACAC
CACGAAAAGAGAAACAGGTAATAGAAATTATTGGCTAATAAAATAATTGG
ACGTAAATCATTAAACCAAAAACATTGAAGGCCAGAGGGTGAGACAAGCA
CTACCATAAAATGATTTGATGAATGCAAAGGGAGAGAAAGAAGCATTGTA
GTTATGAAGTAATTAATTACTAAAAAAAATTTTGAATACCTATGACATTT
ATGGGTGG
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