EY665225

Overview
NameEY665225
Unique NameEY665225
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1052
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665225 vs. ExPASy Swiss-Prot
Match: RCA_CUCSA (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 1.151e-50
Identity = 94/122 (77.05%), Postives = 104/122 (85.25%), Query Frame = 1
Query:    1 QTMKDRWTPLAYDESDDQQDITPGKGAVDSLFQAPMGTGTHYSVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFPKMGI*P 366
            QT KD+W  LA+D SDDQQDIT GKG  D LFQAPMGTGTH +V+SSY+YIS GLR Y+ DN +DG YIAPAFMDKL VHI KNF++LPNIKVPLILG+WGGKGQGKSFQCELVF KMGI P
Sbjct:   62 QTEKDKWRGLAFDTSDDQQDITRGKGLADPLFQAPMGTGTHNAVLSSYEYISAGLRDYSYDNNVDGFYIAPAFMDKLTVHIVKNFLTLPNIKVPLILGVWGGKGQGKSFQCELVFAKMGINP 183          

HSP 2 Score: 21.557 bits (44), Expect = 1.151e-50
Identity = 11/30 (36.67%), Postives = 16/30 (53.33%), Query Frame = 3
Query:  408 GKHPNLNKQRNMERTELIKKRKTGRRLLND 497
            G+   L +QR  E  ++IKK K     +ND
Sbjct:  197 GEPAKLIRQRYREAADIIKKGKMCCLFIND 226          
BLAST of EY665225 vs. ExPASy Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 1.499e-50
Identity = 94/118 (79.66%), Postives = 104/118 (88.14%), Query Frame = 1
Query:   13 DRWTPLAYDESDDQQDITPGKGAVDSLFQAPMGTGTHYSVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFPKMGI*P 366
            D+W  LAYD SDDQQDIT GKG VDSLFQAP G GTH +V+SSY+Y+SQGLR Y+ DNTM G YIAPAFMDKLVVH++KNFM+LPNIK+PLILGIWGGKGQGKSFQCELVF KMGI P
Sbjct:   59 DKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGHGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINP 176          

HSP 2 Score: 21.557 bits (44), Expect = 1.499e-50
Identity = 11/30 (36.67%), Postives = 16/30 (53.33%), Query Frame = 3
Query:  408 GKHPNLNKQRNMERTELIKKRKTGRRLLND 497
            G+   L +QR  E  ++IKK K     +ND
Sbjct:  190 GEPAKLIRQRYREAADMIKKGKMCCLFIND 219          
BLAST of EY665225 vs. ExPASy Swiss-Prot
Match: RCA_PHAAU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus aureus GN=RCA PE=2 SV=2)

HSP 1 Score: 200.29 bits (508), Expect = 1.580e-50
Identity = 99/122 (81.15%), Postives = 104/122 (85.25%), Query Frame = 1
Query:    1 QTMKDRWTPLAYDESDDQQDITPGKGAVDSLFQAPMGTGTHYSVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFPKMGI*P 366
            QT KDRW  LAYD SDDQQDIT GKG VD LFQAPM  GTHY+VMSSY+Y+S GLR   LDN  DG YIAPAF+DKLVVHITKNFM+LPNIKVPLILGIWGGKGQGKSFQCELVF KMGI P
Sbjct:   69 QTNKDRWKGLAYDISDDQQDITRGKGMVDPLFQAPMDAGTHYAVMSSYEYLSTGLR--QLDNIKDGFYIAPAFLDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINP 188          
BLAST of EY665225 vs. ExPASy Swiss-Prot
Match: RCA_SOLPN (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Solanum pennellii PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 4.598e-50
Identity = 92/122 (75.41%), Postives = 106/122 (86.89%), Query Frame = 1
Query:    1 QTMKDRWTPLAYDESDDQQDITPGKGAVDSLFQAPMGTGTHYSVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFPKMGI*P 366
            +T +DRW  L  + SDDQQDI  GKG VDSLFQAP GTGTH+++M+SY+Y+SQ L+TY LDN +DG YIAPAFMDKLVVHITKNF++LPNIKVPLILG+WGGKGQGKSFQCELVF KMGI P
Sbjct:   64 ETKEDRWKGLYDNTSDDQQDIARGKGLVDSLFQAPTGTGTHHAIMNSYEYVSQALKTYQLDNKLDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGVWGGKGQGKSFQCELVFRKMGINP 185          
BLAST of EY665225 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 3.770e-44
Identity = 84/118 (71.19%), Postives = 96/118 (81.36%), Query Frame = 1
Query:   13 DRWTPLAYDESDDQQDITPGKGAVDSLFQAPMGTGTHYSVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFPKMGI*P 366
            D+W  LA D SDDQ DI  GKG VDSLFQAP   GTH  + SS++Y SQGLR Y++DN +   YIAPAFMDKLVVHITKNF++LPNIK+PLILG+WGGKGQGKSFQCELVF K+GI P
Sbjct:   67 DKWAHLAKDFSDDQLDIRRGKGMVDSLFQAPADAGTHVPIQSSFEYESQGLRKYDIDNMLGDFYIAPAFMDKLVVHITKNFLNLPNIKIPLILGVWGGKGQGKSFQCELVFAKLGINP 184          
BLAST of EY665225 vs. ExPASy Swiss-Prot
Match: RCA_CHLRE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 3.911e-33
Identity = 71/120 (59.17%), Postives = 86/120 (71.67%), Query Frame = 1
Query:   16 RWTPL--AYDESDDQQDITPGKGAVDSLFQAPMGTG-THYSVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFPKMGI*P 366
            RW  +    D SDDQQDIT G+  VD LFQ   G G TH +V+SS +Y+SQ   ++N  N  DG YI+PAF+DK+ +HI KNFM LP IKVPLILGIWGGKGQGK+FQC L + K+GI P
Sbjct:   42 RWRSIDAGVDASDDQQDITRGREMVDDLFQGGFGAGGTHNAVLSSQEYLSQSRASFN--NIEDGFYISPAFLDKMTIHIAKNFMDLPKIKVPLILGIWGGKGQGKTFQCALAYKKLGIAP 159          
BLAST of EY665225 vs. ExPASy Swiss-Prot
Match: RCA_ANASC (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain CA / ATCC 33047) GN=rca PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.950e-16
Identity = 38/53 (71.70%), Postives = 46/53 (86.79%), Query Frame = 1
Query:  202 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFPKMGI 360
            YIAP F+DKL VHITKNF++LP ++VPLILGI G KG+GK+FQCEL F KMG+
Sbjct:    4 YIAPRFLDKLAVHITKNFLNLPGVRVPLILGIHGRKGEGKTFQCELAFEKMGV 56          
BLAST of EY665225 vs. ExPASy Swiss-Prot
Match: RCA_ANASP (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain PCC 7120) GN=rca PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.547e-16
Identity = 38/53 (71.70%), Postives = 46/53 (86.79%), Query Frame = 1
Query:  202 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFPKMGI 360
            YIAP F+DKL VHITKNF+++P ++VPLILGI G KG+GK+FQCEL F KMGI
Sbjct:    4 YIAPRFLDKLAVHITKNFLNIPGVRVPLILGIHGRKGEGKTFQCELAFEKMGI 56          
BLAST of EY665225 vs. ExPASy Swiss-Prot
Match: RCA_ARAHY (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic (Fragments) OS=Arachis hypogaea GN=RCA PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.070e-14
Identity = 49/94 (52.13%), Postives = 52/94 (55.32%), Query Frame = 1
Query:   28 LAYDESDDQQDITPGKGAVDSLFQAPMGTGTHYSVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGK 309
            LAYD SDDQQDIT  +G VDSLFQAPM  GTHY+VMSSY+YISQGLR                                    VPLILGIWGGK
Sbjct:    2 LAYDISDDQQDIT--RGMVDSLFQAPMNDGTHYAVMSSYEYISQGLR------------------------------------VPLILGIWGGK 57          
The following BLAST results are available for this feature:
BLAST of EY665225 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
RCA_CUCSA1.151e-5077.05Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAA_HORVU1.499e-5079.66Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAAU1.580e-5081.15Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SOLPN4.598e-5075.41Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SPIOL3.770e-4471.19Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CHLRE3.911e-3359.17Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASC1.950e-1671.70Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASP2.547e-1671.70Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARAHY1.070e-1452.13Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-083-D12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665225 ID=EY665225; Name=EY665225; organism=Citrus sinensis; type=EST; length=1052bp
CAGACCATGAAGGACAGATGGACCCCCCTTGCCTACGACGAATCTGATGA
CCAGCAAGACATCACCCCAGGAAAAGGTGCTGTGGACTCTCTGTTCCAAG
CCCCCATGGGAACCGGAACTCACTATTCTGTCATGAGTTCTTATGACTAC
ATCAGCCAAGGTCTCCGCACATACAACTTGGACAACACGATGGACGGTCT
CTACATTGCCCCTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGA
ACTTCATGTCCCTGCCCAACATCAAGGTTCCTCTCATCTTGGGTATATGG
GGAGGCAAAGGGCAAGGAAAATCATTCCAATGTGAGCTTGTTTTCCCCAA
GATGGGCATCTAACCCAATTATGAAGATTGGCGAAAAAATAGGAAATGGA
AATGCTTGGAAAACACCCAAACTTGAACAAGCAGAGGAACATGGAGAGAA
CTGAACTTATAAAAAAGAGGAAGACGGGCAGACGACTATTAAATGACTAG
ATGAGGAGCTGAAAAGAAGGTACCGCCAACAAATATCATTATATAACATG
ATGATTTACAATATACTCAATAATTTGCTAATAACTAGATTAGGTTATAT
ACCATAGCTCGTGACAAACAGGAGAATAGCCTAGAGAAAAAAATAAAAAA
CAGATACAAAATTCAATGATAATAAAACATACAAATAATAGAAGCAAAAA
AATAAAAATATAAAAAACAAAAAGAGAAATAAGGATATCGATTACAAAAT
TATTTGAGTCATCAATTGCAAGCATAAATGCATCTTATATCTGAATCGAT
CAATCTTTACTTTGAGACTTAAACCCCTCGTATCCAGTTCTAATTAATGT
AAAATGATGTGAAGGGTTATGTGTTTCTAACGAACTGATTTTCGATAAAA
TAGTACTACTGTAAGATATCTATAGAGGAAAATGATTACTTATAAATGTT
TTATAAAACAAATTAAAAATGTGAACATAATATACTAAACAAGATAATTA
CAGATAAATACAAAAATAGAAAACACTATTGAATCAAAAAATCAAAAATA
AC
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