CV719930

Overview
NameCV719930
Unique NameCV719930
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length750
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV719930 vs. ExPASy Swiss-Prot
Match: ATPF_MANES (ATP synthase subunit b, chloroplastic OS=Manihot esculenta GN=atpF PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.149e-56
Identity = 109/125 (87.20%), Postives = 119/125 (95.20%), Query Frame = 1 
Query:  337 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNGYSEIEREKFNLINSTYKTLDQLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSCLNKELHLRTISANIGMFGAMKEITD 711
            IL++IRNSE+L+ GAIE+LEKARARLRK+EIEADQFR NGYSEIEREK NLINSTYKTL+QLENYKNETIHFEQQR INQVRQRVFQQALQGALGTLNSCL  ELHLRTI+AN+GMFGA+KEITD
Sbjct:   60 ILDTIRNSEKLREGAIEQLEKARARLRKVEIEADQFRTNGYSEIEREKLNLINSTYKTLEQLENYKNETIHFEQQRTINQVRQRVFQQALQGALGTLNSCLTNELHLRTINANLGMFGAIKEITD 184
[Close]
BLAST of CV719930 vs. ExPASy Swiss-Prot
Match: ATPF_ATRBE (ATP synthase subunit b, chloroplastic OS=Atropa belladonna GN=atpF PE=3 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.960e-56
Identity = 110/125 (88.00%), Postives = 118/125 (94.40%), Query Frame = 1 
Query:  337 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNGYSEIEREKFNLINSTYKTLDQLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSCLNKELHLRTISANIGMFGAMKEITD 711
            ILN+IRNSEEL+ GAIE+LEKAR+RLRK+E EA+QFRVNGYSEIEREK NLINSTYKTL+QLENYKNETI FEQQRAINQVRQRVFQQAL+GALGTLNSCLN ELHLRTISANIGM G MKEITD
Sbjct:   60 ILNTIRNSEELREGAIEQLEKARSRLRKVETEAEQFRVNGYSEIEREKLNLINSTYKTLEQLENYKNETIQFEQQRAINQVRQRVFQQALRGALGTLNSCLNNELHLRTISANIGMLGTMKEITD 184
[Close]
BLAST of CV719930 vs. ExPASy Swiss-Prot
Match: ATPF_CARPA (ATP synthase subunit b, chloroplastic OS=Carica papaya GN=atpF PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.560e-56
Identity = 110/125 (88.00%), Postives = 121/125 (96.80%), Query Frame = 1 
Query:  337 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNGYSEIEREKFNLINSTYKTLDQLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSCLNKELHLRTISANIGMFGAMKEITD 711
            ILN+IRNSEEL+ GAIE+LEKARARLRK+E+EA+QFRVNGYSEIEREK+NLINST KTL+QLENYKNETI FEQQRAINQVRQRVFQQALQGA+GTLNSCL+ ELHLRTI+ANIGMFGAMKEITD
Sbjct:   60 ILNTIRNSEELRDGAIEQLEKARARLRKVEMEAEQFRVNGYSEIEREKWNLINSTSKTLEQLENYKNETIQFEQQRAINQVRQRVFQQALQGAIGTLNSCLSNELHLRTINANIGMFGAMKEITD 184
[Close]
BLAST of CV719930 vs. ExPASy Swiss-Prot
Match: ATPF_SOLTU (ATP synthase subunit b, chloroplastic OS=Solanum tuberosum GN=atpF PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 3.344e-56
Identity = 110/125 (88.00%), Postives = 118/125 (94.40%), Query Frame = 1 
Query:  337 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNGYSEIEREKFNLINSTYKTLDQLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSCLNKELHLRTISANIGMFGAMKEITD 711
            ILN+IRNSEEL+ GAIE+LEKAR+RLRK+E EA+QFRVNGYSEIEREK NLINSTYKTL+QLENYKNETI FEQQRAINQVRQRVFQQAL+GALGTLNSCLN ELHLRTISANIGM G MKEITD
Sbjct:   60 ILNTIRNSEELRGGAIEQLEKARSRLRKVETEAEQFRVNGYSEIEREKLNLINSTYKTLEQLENYKNETIQFEQQRAINQVRQRVFQQALRGALGTLNSCLNNELHLRTISANIGMLGTMKEITD 184
[Close]
BLAST of CV719930 vs. ExPASy Swiss-Prot
Match: ATPF_SOLLC (ATP synthase subunit b, chloroplastic OS=Solanum lycopersicum GN=atpF PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 3.344e-56
Identity = 110/125 (88.00%), Postives = 118/125 (94.40%), Query Frame = 1 
Query:  337 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNGYSEIEREKFNLINSTYKTLDQLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSCLNKELHLRTISANIGMFGAMKEITD 711
            ILN+IRNSEEL+ GAIE+LEKAR+RLRK+E EA+QFRVNGYSEIEREK NLINSTYKTL+QLENYKNETI FEQQRAINQVRQRVFQQAL+GALGTLNSCLN ELHLRTISANIGM G MKEITD
Sbjct:   60 ILNTIRNSEELRGGAIEQLEKARSRLRKVETEAEQFRVNGYSEIEREKLNLINSTYKTLEQLENYKNETIQFEQQRAINQVRQRVFQQALRGALGTLNSCLNNELHLRTISANIGMLGTMKEITD 184
[Close]
BLAST of CV719930 vs. ExPASy Swiss-Prot
Match: ATPF_SOLBU (ATP synthase subunit b, chloroplastic OS=Solanum bulbocastanum GN=atpF PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 3.344e-56
Identity = 110/125 (88.00%), Postives = 118/125 (94.40%), Query Frame = 1 
Query:  337 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNGYSEIEREKFNLINSTYKTLDQLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSCLNKELHLRTISANIGMFGAMKEITD 711
            ILN+IRNSEEL+ GAIE+LEKAR+RLRK+E EA+QFRVNGYSEIEREK NLINSTYKTL+QLENYKNETI FEQQRAINQVRQRVFQQAL+GALGTLNSCLN ELHLRTISANIGM G MKEITD
Sbjct:   60 ILNTIRNSEELRGGAIEQLEKARSRLRKVETEAEQFRVNGYSEIEREKLNLINSTYKTLEQLENYKNETIQFEQQRAINQVRQRVFQQALRGALGTLNSCLNNELHLRTISANIGMLGTMKEITD 184
[Close]
BLAST of CV719930 vs. ExPASy Swiss-Prot
Match: ATPF_TOBAC (ATP synthase subunit b, chloroplastic OS=Nicotiana tabacum GN=atpF PE=2 SV=3)

HSP 1 Score: 218.009 bits (554), Expect = 4.367e-56
Identity = 110/125 (88.00%), Postives = 118/125 (94.40%), Query Frame = 1 
Query:  337 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNGYSEIEREKFNLINSTYKTLDQLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSCLNKELHLRTISANIGMFGAMKEITD 711
            ILN+IRNSEEL+ GAIE+LEKAR+RLRK+E EA+QFRVNGYSEIEREK NLINSTYKTL+QLENYKNETI FEQQRAINQVRQRVFQQAL+GALGTLNSCLN ELHLRTISANIGM G MKEITD
Sbjct:   60 ILNTIRNSEELRGGAIEQLEKARSRLRKVESEAEQFRVNGYSEIEREKLNLINSTYKTLEQLENYKNETIQFEQQRAINQVRQRVFQQALRGALGTLNSCLNNELHLRTISANIGMLGTMKEITD 184
[Close]
BLAST of CV719930 vs. ExPASy Swiss-Prot
Match: ATPF_NICSY (ATP synthase subunit b, chloroplastic OS=Nicotiana sylvestris GN=atpF PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 4.367e-56
Identity = 110/125 (88.00%), Postives = 118/125 (94.40%), Query Frame = 1 
Query:  337 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNGYSEIEREKFNLINSTYKTLDQLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSCLNKELHLRTISANIGMFGAMKEITD 711
            ILN+IRNSEEL+ GAIE+LEKAR+RLRK+E EA+QFRVNGYSEIEREK NLINSTYKTL+QLENYKNETI FEQQRAINQVRQRVFQQAL+GALGTLNSCLN ELHLRTISANIGM G MKEITD
Sbjct:   60 ILNTIRNSEELRGGAIEQLEKARSRLRKVESEAEQFRVNGYSEIEREKLNLINSTYKTLEQLENYKNETIQFEQQRAINQVRQRVFQQALRGALGTLNSCLNNELHLRTISANIGMLGTMKEITD 184
[Close]
BLAST of CV719930 vs. ExPASy Swiss-Prot
Match: ATPF_JASNU (ATP synthase subunit b, chloroplastic OS=Jasminum nudiflorum GN=atpF PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 7.449e-56
Identity = 110/125 (88.00%), Postives = 120/125 (96.00%), Query Frame = 1 
Query:  337 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNGYSEIEREKFNLINSTYKTLDQLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSCLNKELHLRTISANIGMFGAMKEITD 711
            ILN+IRNSEEL+ GAIE+LEKARARLRK+E+EADQFRVNGYSEIER+K+NLINST KTL+Q EN+KNETI FEQQRAINQVRQRVFQQALQGALGTLNSCLNKELHLRTISANIG+ GAMKEITD
Sbjct:   60 ILNTIRNSEELRGGAIEQLEKARARLRKMEMEADQFRVNGYSEIERDKWNLINSTSKTLEQFENFKNETIQFEQQRAINQVRQRVFQQALQGALGTLNSCLNKELHLRTISANIGILGAMKEITD 184
[Close]
BLAST of CV719930 vs. ExPASy Swiss-Prot
Match: ATPF_MORIN (ATP synthase subunit b, chloroplastic OS=Morus indica GN=atpF PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.271e-55
Identity = 108/125 (86.40%), Postives = 117/125 (93.60%), Query Frame = 1 
Query:  337 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNGYSEIEREKFNLINSTYKTLDQLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSCLNKELHLRTISANIGMFGAMKEITD 711
            IL +IRNSEEL+ GA+E+LEKAR+RLRK+E EADQFRVNGYSEIEREK NLINST KTL+QLENYKNETIHFEQQRAIN+VRQRVFQQAL+GALGTLNSCLN ELHLRTIS NIGMFG MKEITD
Sbjct:   60 ILKTIRNSEELREGALEQLEKARSRLRKVEKEADQFRVNGYSEIEREKLNLINSTSKTLEQLENYKNETIHFEQQRAINEVRQRVFQQALEGALGTLNSCLNNELHLRTISTNIGMFGTMKEITD 184
The following BLAST results are available for this feature:
BLAST of CV719930 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
ATPF_MANES1.149e-5687.20ATP synthase subunit b, chloroplastic OS=Manihot e... [more]
ATPF_ATRBE1.960e-5688.00ATP synthase subunit b, chloroplastic OS=Atropa be... [more]
ATPF_CARPA2.560e-5688.00ATP synthase subunit b, chloroplastic OS=Carica pa... [more]
ATPF_SOLTU3.344e-5688.00ATP synthase subunit b, chloroplastic OS=Solanum t... [more]
ATPF_SOLLC3.344e-5688.00ATP synthase subunit b, chloroplastic OS=Solanum l... [more]
ATPF_SOLBU3.344e-5688.00ATP synthase subunit b, chloroplastic OS=Solanum b... [more]
ATPF_TOBAC4.367e-5688.00ATP synthase subunit b, chloroplastic OS=Nicotiana... [more]
ATPF_NICSY4.367e-5688.00ATP synthase subunit b, chloroplastic OS=Nicotiana... [more]
ATPF_JASNU7.449e-5688.00ATP synthase subunit b, chloroplastic OS=Jasminum ... [more]
ATPF_MORIN1.271e-5586.40ATP synthase subunit b, chloroplastic OS=Morus ind... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_0012K16_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0012K16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV719930 ID=CV719930; Name=CV719930; organism=Citrus sinensis; type=EST; length=750bp
TTTGGATTTGAAGAAAAAAAGAAACAACTTTGCTGACAATTATATATTTT
GATTTGGTCAGAAGAGTCCTCCGAATATTCTGTTCTTGGATTAGGGATCA
GTCGCAAGATTCATTTTGGAATATGAATAGAGAAGAGAGGGAGAGGATAG
GCTCATTACATTAAAAAAAGATATGGGAACCCCCCCCATACATAAGTAGT
TGACGTAATTGAGTGGGAGAGCCAAATGAATCGAAAAATTCATGTTTGGT
TCGGGAAGGGATCATCGAAGTTTTGAGATGAATGGAAAGATAATCTACTT
TCATTAAGTGATTTATTAGATAATCGCAAACTGAGGATTTTGAATAGTAT
TCGAAATTCAGAAGAACTGCAGAGAGGGGCCATTGAACGGCTGGAAAAAG
CCCGGGCCCGGTTACGAAAAATAGAAATAGAAGCAGATCAGTTTCGAGTG
AATGGATACTCTGAGATAGAACGAGAAAAATTCAATTTGATTAATTCAAC
TTATAAGACTTTGGATCAATTAGAAAATTACAAAAATGAAACCATTCATT
TTGAACAACAAAGAGCAATTAATCAAGTCCGACAACGGGTTTTCCAACAA
GCTTTACAAGGAGCGCTCGGAACTCTGAATAGTTGTTTGAACAAGGAGTT
ACATTTACGTACCATTAGTGCCAATATTGGCATGTTTGGAGCGATGAAAG
AAATAACTGATTAGTCCTTTTACTGTAGGCACATTATTTTTTTTTTTTTT
back to top