CV719930

Overview
NameCV719930
Unique NameCV719930
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length750
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV719930 vs. ExPASy Swiss-Prot
Match: ATPF_BARVE (ATP synthase subunit b, chloroplastic OS=Barbarea verna GN=atpF PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.076e-54
Identity = 107/125 (85.60%), Postives = 116/125 (92.80%), Query Frame = 1
Query:  337 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNGYSEIEREKFNLINSTYKTLDQLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSCLNKELHLRTISANIGMFGAMKEITD 711
            ILN+IRNSEEL+ GAI++LE ARARLRK+E EADQFRVNGYSEIEREK NLINSTYKTL QLENYKNETI FEQQR INQVR+RVFQQALQGA+GTLNSCL+ ELHLRTI+ANIGMFG MKEITD
Sbjct:   60 ILNTIRNSEELREGAIQQLENARARLRKVETEADQFRVNGYSEIEREKLNLINSTYKTLKQLENYKNETILFEQQRTINQVRERVFQQALQGAIGTLNSCLSHELHLRTINANIGMFGTMKEITD 184          
BLAST of CV719930 vs. ExPASy Swiss-Prot
Match: ATPF_COFAR (ATP synthase subunit b, chloroplastic OS=Coffea arabica GN=atpF PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.835e-54
Identity = 107/125 (85.60%), Postives = 116/125 (92.80%), Query Frame = 1
Query:  337 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNGYSEIEREKFNLINSTYKTLDQLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSCLNKELHLRTISANIGMFGAMKEITD 711
            ILN+IRNSEEL+ GAIE+LEKAR RLRK+E+EADQFRVNGYSEIEREK NLINS YKTL+QLENYKNETI FEQQR INQVRQRVFQQALQGALGTLNSCLN ELHLRTISANIG+ G++KE TD
Sbjct:   66 ILNTIRNSEELRGGAIEQLEKARTRLRKVEMEADQFRVNGYSEIEREKLNLINSIYKTLEQLENYKNETIQFEQQRTINQVRQRVFQQALQGALGTLNSCLNNELHLRTISANIGILGSIKEKTD 190          
BLAST of CV719930 vs. ExPASy Swiss-Prot
Match: ATPF_FAGEA (ATP synthase subunit b, chloroplastic OS=Fagopyrum esculentum subsp. ancestrale GN=atpF PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.396e-54
Identity = 106/125 (84.80%), Postives = 117/125 (93.60%), Query Frame = 1
Query:  337 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNGYSEIEREKFNLINSTYKTLDQLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSCLNKELHLRTISANIGMFGAMKEITD 711
            I+N+IRNSEEL   A+E+LEKARARLRK+E+EADQFR+NGYSEIER+K NLINS YKTL+QLENYKNETIHFEQQR INQVR RVFQQALQGALGTLNSCL+ ELHLRTI+ANIGMFGAMKEITD
Sbjct:   60 IVNTIRNSEELCGRAVEQLEKARARLRKVEMEADQFRMNGYSEIERDKLNLINSIYKTLEQLENYKNETIHFEQQRVINQVRLRVFQQALQGALGTLNSCLSNELHLRTINANIGMFGAMKEITD 184          
BLAST of CV719930 vs. ExPASy Swiss-Prot
Match: ATPF_CRUWA (ATP synthase subunit b, chloroplastic OS=Crucihimalaya wallichii GN=atpF PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 4.087e-54
Identity = 106/125 (84.80%), Postives = 115/125 (92.00%), Query Frame = 1
Query:  337 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNGYSEIEREKFNLINSTYKTLDQLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSCLNKELHLRTISANIGMFGAMKEITD 711
            ILN+IRNSEEL+  AI++LE ARARLRK+E EADQFRVNGYSEIEREK NLINSTYKTL QLENYKNETI FEQQR INQVR+RVFQQALQGA+GTLNSCL+ ELHLRTI+ANIGMFG MKEITD
Sbjct:   60 ILNTIRNSEELREAAIQQLENARARLRKVETEADQFRVNGYSEIEREKLNLINSTYKTLKQLENYKNETILFEQQRTINQVRERVFQQALQGAIGTLNSCLSNELHLRTINANIGMFGTMKEITD 184          
BLAST of CV719930 vs. ExPASy Swiss-Prot
Match: ATPF_RANMC (ATP synthase subunit b, chloroplastic OS=Ranunculus macranthus GN=atpF PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 5.338e-54
Identity = 105/124 (84.68%), Postives = 117/124 (94.35%), Query Frame = 1
Query:  337 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNGYSEIEREKFNLINSTYKTLDQLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSCLNKELHLRTISANIGMFGAMKEIT 708
            IL++IRNSEEL+ GAIE+LEKA+ARLRK++ EAD+FR NGYSEIEREK NLINSTY+ L++LENYKNETI FEQQRAINQVRQR+FQQALQGALGTLNSCLN ELHLRTISANIGMFGAMKEIT
Sbjct:   60 ILSTIRNSEELRGGAIEKLEKAKARLRKVKAEADEFRTNGYSEIEREKCNLINSTYQNLERLENYKNETIQFEQQRAINQVRQRIFQQALQGALGTLNSCLNNELHLRTISANIGMFGAMKEIT 183          
BLAST of CV719930 vs. ExPASy Swiss-Prot
Match: ATPF_OLIPU (ATP synthase subunit b, chloroplastic OS=Olimarabidopsis pumila GN=atpF PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 5.338e-54
Identity = 106/125 (84.80%), Postives = 115/125 (92.00%), Query Frame = 1
Query:  337 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNGYSEIEREKFNLINSTYKTLDQLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSCLNKELHLRTISANIGMFGAMKEITD 711
            ILN+IRNSEEL+ GAI++LE A ARLRK+E EADQFRVNGYSEIEREK NLINSTYKTL QLENYKNETI FEQQR INQVR+RVFQQALQGA+GTLNSCL+ ELHLRTI+ANIGMFG MKEITD
Sbjct:   60 ILNTIRNSEELREGAIQQLENALARLRKVETEADQFRVNGYSEIEREKLNLINSTYKTLKQLENYKNETILFEQQRTINQVRERVFQQALQGAIGTLNSCLSNELHLRTINANIGMFGTMKEITD 184          
BLAST of CV719930 vs. ExPASy Swiss-Prot
Match: ATPF_CAPBU (ATP synthase subunit b, chloroplastic OS=Capsella bursa-pastoris GN=atpF PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 6.972e-54
Identity = 105/125 (84.00%), Postives = 116/125 (92.80%), Query Frame = 1
Query:  337 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNGYSEIEREKFNLINSTYKTLDQLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSCLNKELHLRTISANIGMFGAMKEITD 711
            ILN+IRNSEEL+ GAI++LE ARARLRK+E EAD+FRVNGYSEIERE+ NLINSTYKTL QLENYKNETI FEQQR INQVR+RVFQQALQGA+GTLNSCL+ ELHLRTI+ANIGMFG MKEITD
Sbjct:   60 ILNTIRNSEELREGAIQQLENARARLRKVETEADKFRVNGYSEIEREQLNLINSTYKTLKQLENYKNETILFEQQRTINQVRERVFQQALQGAIGTLNSCLSNELHLRTINANIGMFGTMKEITD 184          
BLAST of CV719930 vs. ExPASy Swiss-Prot
Match: ATPF_ARAHI (ATP synthase subunit b, chloroplastic OS=Arabis hirsuta GN=atpF PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 6.972e-54
Identity = 105/125 (84.00%), Postives = 115/125 (92.00%), Query Frame = 1
Query:  337 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNGYSEIEREKFNLINSTYKTLDQLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSCLNKELHLRTISANIGMFGAMKEITD 711
            ILN+IRNSEEL+ GAI++LE AR RLRK+E EADQFRVNGYSEIEREK NLINSTY+TL QLENYKNETI FEQQR INQVR+RVFQQALQGA+GTLNSCL+ ELHLRTI+ANIGMFG MKEITD
Sbjct:   60 ILNTIRNSEELREGAIQQLENARIRLRKVETEADQFRVNGYSEIEREKLNLINSTYRTLKQLENYKNETILFEQQRTINQVRERVFQQALQGAIGTLNSCLSNELHLRTINANIGMFGTMKEITD 184          
BLAST of CV719930 vs. ExPASy Swiss-Prot
Match: ATPF_CUCSA (ATP synthase subunit b, chloroplastic OS=Cucumis sativus GN=atpF PE=3 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 9.105e-54
Identity = 106/125 (84.80%), Postives = 118/125 (94.40%), Query Frame = 1
Query:  337 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNGYSEIEREKFNLINSTYKTLDQLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSCLNKELHLRTISANIGMFGAMKEITD 711
            IL +I+NSEEL+ GAIE+LEKARARLRK+E+EADQFRVNGYSEIEREK NLINST K+L+QLENYKNETI FEQQ+AINQVRQ+VFQQALQGALGTLNSCL+ ELHLRTISANIGMFG MKEIT+
Sbjct:   60 ILKTIQNSEELRGGAIEQLEKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTSKSLEQLENYKNETIRFEQQKAINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGMFGTMKEITN 184          
BLAST of CV719930 vs. ExPASy Swiss-Prot
Match: ATPF_ARATH (ATP synthase subunit b, chloroplastic OS=Arabidopsis thaliana GN=atpF PE=3 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 9.105e-54
Identity = 105/125 (84.00%), Postives = 115/125 (92.00%), Query Frame = 1
Query:  337 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNGYSEIEREKFNLINSTYKTLDQLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSCLNKELHLRTISANIGMFGAMKEITD 711
            ILN+IRNSEEL+ GAI++LE ARARLR +E EAD+FRVNGYSEIEREK NLINSTYKTL QLENYKNETI FEQQR INQVR+RVFQQALQGA+GTLNSCL+ ELHLRTI+ANIGMFG MKEITD
Sbjct:   60 ILNTIRNSEELREGAIQQLENARARLRNVETEADKFRVNGYSEIEREKLNLINSTYKTLKQLENYKNETILFEQQRTINQVRERVFQQALQGAIGTLNSCLSNELHLRTINANIGMFGTMKEITD 184          
The following BLAST results are available for this feature:
BLAST of CV719930 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
ATPF_BARVE1.076e-5485.60ATP synthase subunit b, chloroplastic OS=Barbarea ... [more]
ATPF_COFAR1.835e-5485.60ATP synthase subunit b, chloroplastic OS=Coffea ar... [more]
ATPF_FAGEA2.396e-5484.80ATP synthase subunit b, chloroplastic OS=Fagopyrum... [more]
ATPF_CRUWA4.087e-5484.80ATP synthase subunit b, chloroplastic OS=Crucihima... [more]
ATPF_RANMC5.338e-5484.68ATP synthase subunit b, chloroplastic OS=Ranunculu... [more]
ATPF_OLIPU5.338e-5484.80ATP synthase subunit b, chloroplastic OS=Olimarabi... [more]
ATPF_CAPBU6.972e-5484.00ATP synthase subunit b, chloroplastic OS=Capsella ... [more]
ATPF_ARAHI6.972e-5484.00ATP synthase subunit b, chloroplastic OS=Arabis hi... [more]
ATPF_CUCSA9.105e-5484.80ATP synthase subunit b, chloroplastic OS=Cucumis s... [more]
ATPF_ARATH9.105e-5484.00ATP synthase subunit b, chloroplastic OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0012K16_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0012K16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV719930 ID=CV719930; Name=CV719930; organism=Citrus sinensis; type=EST; length=750bp
TTTGGATTTGAAGAAAAAAAGAAACAACTTTGCTGACAATTATATATTTT
GATTTGGTCAGAAGAGTCCTCCGAATATTCTGTTCTTGGATTAGGGATCA
GTCGCAAGATTCATTTTGGAATATGAATAGAGAAGAGAGGGAGAGGATAG
GCTCATTACATTAAAAAAAGATATGGGAACCCCCCCCATACATAAGTAGT
TGACGTAATTGAGTGGGAGAGCCAAATGAATCGAAAAATTCATGTTTGGT
TCGGGAAGGGATCATCGAAGTTTTGAGATGAATGGAAAGATAATCTACTT
TCATTAAGTGATTTATTAGATAATCGCAAACTGAGGATTTTGAATAGTAT
TCGAAATTCAGAAGAACTGCAGAGAGGGGCCATTGAACGGCTGGAAAAAG
CCCGGGCCCGGTTACGAAAAATAGAAATAGAAGCAGATCAGTTTCGAGTG
AATGGATACTCTGAGATAGAACGAGAAAAATTCAATTTGATTAATTCAAC
TTATAAGACTTTGGATCAATTAGAAAATTACAAAAATGAAACCATTCATT
TTGAACAACAAAGAGCAATTAATCAAGTCCGACAACGGGTTTTCCAACAA
GCTTTACAAGGAGCGCTCGGAACTCTGAATAGTTGTTTGAACAAGGAGTT
ACATTTACGTACCATTAGTGCCAATATTGGCATGTTTGGAGCGATGAAAG
AAATAACTGATTAGTCCTTTTACTGTAGGCACATTATTTTTTTTTTTTTT
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