CV719930

Overview
NameCV719930
Unique NameCV719930
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length750
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV719930 vs. ExPASy Swiss-Prot
Match: ATPF_CALFG (ATP synthase subunit b, chloroplastic OS=Calycanthus floridus var. glaucus GN=atpF PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 4.996e-52
Identity = 104/125 (83.20%), Postives = 116/125 (92.80%), Query Frame = 1
Query:  337 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNGYSEIEREKFNLINSTYKTLDQLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSCLNKELHLRTISANIGMFGAMKEITD 711
            I ++IRNS+EL+  AIE+LEKARARLRK+E EAD+FRVNGYSEIEREK+NLIN+TY+ L++LENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNS  N ELHLRTISANIGM GAMKEITD
Sbjct:   60 IWSTIRNSDELREVAIEQLEKARARLRKVEREADEFRVNGYSEIEREKWNLINATYENLERLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSRSNSELHLRTISANIGMLGAMKEITD 184          
BLAST of CV719930 vs. ExPASy Swiss-Prot
Match: ATPF_AMBTC (ATP synthase subunit b, chloroplastic OS=Amborella trichopoda GN=atpF PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 8.522e-52
Identity = 103/125 (82.40%), Postives = 115/125 (92.00%), Query Frame = 1
Query:  337 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNGYSEIEREKFNLINSTYKTLDQLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSCLNKELHLRTISANIGMFGAMKEITD 711
            IL++IRNSEEL+ GAIE+LEKARARLRK+EIEAD+FRVNGYSEIEREK NLIN+ Y+ L++LENYKNE+IHFEQQRA+NQVRQRVFQQALQGAL TLNS LN ELHLRTISANIGM G MK ITD
Sbjct:   60 ILSTIRNSEELRGGAIEQLEKARARLRKVEIEADEFRVNGYSEIEREKSNLINAAYENLERLENYKNESIHFEQQRAMNQVRQRVFQQALQGALETLNSYLNSELHLRTISANIGMLGTMKNITD 184          
BLAST of CV719930 vs. ExPASy Swiss-Prot
Match: ATPF_DRIGR (ATP synthase subunit b, chloroplastic OS=Drimys granadensis GN=atpF PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.113e-51
Identity = 109/156 (69.87%), Postives = 123/156 (78.85%), Query Frame = 1
Query:  244 VWFGKGSSKF*DEWXXXXXXXXXXXXXXXXXILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNGYSEIEREKFNLINSTYKTLDQLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSCLNKELHLRTISANIGMFGAMKEITD 711
            ++FGKG S   D                   IL++IRNSEEL+  AIE+LEKARARLRKI +EAD+FRVNGYSEIEREK NLIN+TY  L++LEN+KNETI FE+QRAINQVRQRVFQQALQGALGTLNSCLN ELHLRTISANIGM G +KEITD
Sbjct:   42 IFFGKGVSDLLDN--------------RKQRILSTIRNSEELRGRAIEQLEKARARLRKIGMEADEFRVNGYSEIEREKENLINATYNNLERLENFKNETIRFEEQRAINQVRQRVFQQALQGALGTLNSCLNSELHLRTISANIGMLGTIKEITD 183          
BLAST of CV719930 vs. ExPASy Swiss-Prot
Match: ATPF_DIOEL (ATP synthase subunit b, chloroplastic OS=Dioscorea elephantipes GN=atpF PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.231e-50
Identity = 96/125 (76.80%), Postives = 117/125 (93.60%), Query Frame = 1
Query:  337 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNGYSEIEREKFNLINSTYKTLDQLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSCLNKELHLRTISANIGMFGAMKEITD 711
            IL++I+NSEEL++  IE+LE+AR RLRK+EIEAD++R+NGYSEIEREK NLIN+TY +L++LENYKNET+HFEQQRAIN+VRQRVFQ+ALQGALGTLNSCLN +LH RTISANIG+ GAM+EITD
Sbjct:   61 ILSTIQNSEELRKKTIEQLERARDRLRKVEIEADEYRINGYSEIEREKTNLINATYDSLERLENYKNETLHFEQQRAINKVRQRVFQEALQGALGTLNSCLNSDLHFRTISANIGILGAMEEITD 185          
BLAST of CV719930 vs. ExPASy Swiss-Prot
Match: ATPF_CERDE (ATP synthase subunit b, chloroplastic OS=Ceratophyllum demersum GN=atpF PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.607e-50
Identity = 104/125 (83.20%), Postives = 111/125 (88.80%), Query Frame = 1
Query:  337 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNGYSEIEREKFNLINSTYKTLDQLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSCLNKELHLRTISANIGMFGAMKEITD 711
            IL+SIRNSEEL+  AIE+LEKARARLRK+EIEAD+FRVNGYSEIEREK NLINSTY+ L +LENYKNE I FEQQR INQVRQRVFQQALQ AL TLNSCLN ELHLRTISANI M G MKEITD
Sbjct:   60 ILSSIRNSEELRAKAIEQLEKARARLRKVEIEADKFRVNGYSEIEREKGNLINSTYENLQRLENYKNEAIQFEQQRTINQVRQRVFQQALQEALETLNSCLNSELHLRTISANIVMLGVMKEITD 184          
BLAST of CV719930 vs. ExPASy Swiss-Prot
Match: ATPF_DAUCA (ATP synthase subunit b, chloroplastic OS=Daucus carota GN=atpF PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.099e-50
Identity = 101/122 (82.79%), Postives = 111/122 (90.98%), Query Frame = 1
Query:  337 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNGYSEIEREKFNLINSTYKTLDQLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSCLNKELHLRTISANIGMFGAMKE 702
            ILN+IRNSEEL+ GAIE+LEKAR RLRK+E+EADQFRVNGYSEIERE+ N INST KTL QLENYKNETI+FEQQRAINQVRQ VFQQALQGALGTL+SCLN ELHLRTI ANIGM GA+ +
Sbjct:   60 ILNTIRNSEELRGGAIEQLEKARTRLRKVEMEADQFRVNGYSEIERERLNFINSTSKTLKQLENYKNETINFEQQRAINQVRQLVFQQALQGALGTLSSCLNNELHLRTIRANIGMLGAITD 181          
BLAST of CV719930 vs. ExPASy Swiss-Prot
Match: ATPF_PIPCE (ATP synthase subunit b, chloroplastic OS=Piper cenocladum GN=atpF PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 3.581e-50
Identity = 100/125 (80.00%), Postives = 113/125 (90.40%), Query Frame = 1
Query:  337 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNGYSEIEREKFNLINSTYKTLDQLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSCLNKELHLRTISANIGMFGAMKEITD 711
            IL++IRNSEEL+  AIE+LEKAR RLRK+EIEAD+FRVNGYSEIEREK NLIN+  + L++LENYKNETI FEQQ+AINQVRQRVFQQALQGALGTLNSCLNKELHLR IS+NI + GAMKEI D
Sbjct:   60 ILSTIRNSEELRGAAIEQLEKARTRLRKVEIEADEFRVNGYSEIEREKSNLINAASENLERLENYKNETIRFEQQKAINQVRQRVFQQALQGALGTLNSCLNKELHLRAISSNISILGAMKEIMD 184          
BLAST of CV719930 vs. ExPASy Swiss-Prot
Match: ATPF_PHAVU (ATP synthase subunit b, chloroplastic OS=Phaseolus vulgaris GN=atpF PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 5.170e-49
Identity = 98/122 (80.33%), Postives = 108/122 (88.52%), Query Frame = 1
Query:  337 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNGYSEIEREKFNLINSTYKTLDQLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSCLNKELHLRTISANIGMFGAMKE 702
            I  +I+NSEELQ  AIE+LEKA+ARLRK+E EAD+FRVNGYSEI+REK NLI+S Y TL+QLENYKNE I FEQQR INQVRQRV QQALQGALGTLNSCLN ELHLRT+SANIGMFG MKE
Sbjct:   60 IWRTIQNSEELQEEAIEQLEKAQARLRKVETEADRFRVNGYSEIKREKLNLIHSIYTTLEQLENYKNEAIDFEQQRVINQVRQRVLQQALQGALGTLNSCLNNELHLRTVSANIGMFGTMKE 181          
BLAST of CV719930 vs. ExPASy Swiss-Prot
Match: ATPF_ILLOL (ATP synthase subunit b, chloroplastic OS=Illicium oligandrum GN=atpF PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 5.170e-49
Identity = 102/127 (80.31%), Postives = 113/127 (88.98%), Query Frame = 1
Query:  337 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNGYSEIEREKFNLINSTYKTLDQLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSCLNKELHLRTISANIGMFG--AMKEITD 711
            IL++IRNSEEL+ GAIE+LEKA ARLRK+E+EAD+FRVNGYSEIEREK NLI +T + L++LENYKNETIHFEQQRAINQVRQRVFQQALQGALGTL SCLN ELHLRTIS NIG  G   MKEITD
Sbjct:   60 ILSTIRNSEELRGGAIEQLEKAWARLRKVEMEADEFRVNGYSEIEREKMNLIIATNENLERLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLKSCLNSELHLRTISDNIGTLGDMNMKEITD 186          
BLAST of CV719930 vs. ExPASy Swiss-Prot
Match: ATPF_OENPA (ATP synthase subunit b, chloroplastic OS=Oenothera parviflora GN=atpF PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.351e-48
Identity = 94/125 (75.20%), Postives = 112/125 (89.60%), Query Frame = 1
Query:  337 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNGYSEIEREKFNLINSTYKTLDQLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSCLNKELHLRTISANIGMFGAMKEITD 711
            ILN+IRNSEEL+ GAIE+LEKARARL+ ++IEA+ +R  GY  I+ ++   INSTYKTL+QLEN KNE+IHFEQQRAINQVRQ++FQQALQGALGTLNSCLN ELHLRTISANIG+FG+MKE+TD
Sbjct:   60 ILNTIRNSEELREGAIEQLEKARARLQDVQIEAEGYRAYGYFGIDEQRHESINSTYKTLEQLENNKNESIHFEQQRAINQVRQQIFQQALQGALGTLNSCLNNELHLRTISANIGLFGSMKELTD 184          
The following BLAST results are available for this feature:
BLAST of CV719930 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
ATPF_CALFG4.996e-5283.20ATP synthase subunit b, chloroplastic OS=Calycanth... [more]
ATPF_AMBTC8.522e-5282.40ATP synthase subunit b, chloroplastic OS=Amborella... [more]
ATPF_DRIGR1.113e-5169.87ATP synthase subunit b, chloroplastic OS=Drimys gr... [more]
ATPF_DIOEL1.231e-5076.80ATP synthase subunit b, chloroplastic OS=Dioscorea... [more]
ATPF_CERDE1.607e-5083.20ATP synthase subunit b, chloroplastic OS=Ceratophy... [more]
ATPF_DAUCA2.099e-5082.79ATP synthase subunit b, chloroplastic OS=Daucus ca... [more]
ATPF_PIPCE3.581e-5080.00ATP synthase subunit b, chloroplastic OS=Piper cen... [more]
ATPF_PHAVU5.170e-4980.33ATP synthase subunit b, chloroplastic OS=Phaseolus... [more]
ATPF_ILLOL5.170e-4980.31ATP synthase subunit b, chloroplastic OS=Illicium ... [more]
ATPF_OENPA3.351e-4875.20ATP synthase subunit b, chloroplastic OS=Oenothera... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0012K16_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0012K16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV719930 ID=CV719930; Name=CV719930; organism=Citrus sinensis; type=EST; length=750bp
TTTGGATTTGAAGAAAAAAAGAAACAACTTTGCTGACAATTATATATTTT
GATTTGGTCAGAAGAGTCCTCCGAATATTCTGTTCTTGGATTAGGGATCA
GTCGCAAGATTCATTTTGGAATATGAATAGAGAAGAGAGGGAGAGGATAG
GCTCATTACATTAAAAAAAGATATGGGAACCCCCCCCATACATAAGTAGT
TGACGTAATTGAGTGGGAGAGCCAAATGAATCGAAAAATTCATGTTTGGT
TCGGGAAGGGATCATCGAAGTTTTGAGATGAATGGAAAGATAATCTACTT
TCATTAAGTGATTTATTAGATAATCGCAAACTGAGGATTTTGAATAGTAT
TCGAAATTCAGAAGAACTGCAGAGAGGGGCCATTGAACGGCTGGAAAAAG
CCCGGGCCCGGTTACGAAAAATAGAAATAGAAGCAGATCAGTTTCGAGTG
AATGGATACTCTGAGATAGAACGAGAAAAATTCAATTTGATTAATTCAAC
TTATAAGACTTTGGATCAATTAGAAAATTACAAAAATGAAACCATTCATT
TTGAACAACAAAGAGCAATTAATCAAGTCCGACAACGGGTTTTCCAACAA
GCTTTACAAGGAGCGCTCGGAACTCTGAATAGTTGTTTGAACAAGGAGTT
ACATTTACGTACCATTAGTGCCAATATTGGCATGTTTGGAGCGATGAAAG
AAATAACTGATTAGTCCTTTTACTGTAGGCACATTATTTTTTTTTTTTTT
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