CV719930 | Citrus Genome Database

Overview


Name	CV719930
Unique Name	CV719930
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	750

Libraries


Library Name	Type
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CV719930 vs. ExPASy Swiss-Prot
Match: ATPF_LOLPR (ATP synthase subunit b, chloroplastic OS=Lolium perenne GN=atpF PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 4.529e-45
Identity = 88/121 (72.73%), Postives = 110/121 (90.91%), Query Frame = 1

Query:  337 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNGYSEIEREKFNLINSTYKTLDQLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSCLNKELHLRTISANIGMFGAMK 699
            IL++IRNSEEL+RG IE+LEKAR RL+K+E+EAD++R+NGYS+IEREK NLIN+T  +L+QLE  KNET++FE+QRA+NQVRQRVFQQA+QGALGTLNSCLN ELH RTI ANIG+ G+M+
Sbjct:   60 ILSTIRNSEELRRGTIEKLEKARIRLQKVELEADEYRMNGYSDIEREKANLINATSISLEQLEKSKNETLYFEKQRAMNQVRQRVFQQAVQGALGTLNSCLNTELHFRTIRANIGILGSME 180

[Close]

BLAST of CV719930 vs. ExPASy Swiss-Prot
Match: ATPF_WHEAT (ATP synthase subunit b, chloroplastic OS=Triticum aestivum GN=atpF PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.916e-45
Identity = 88/121 (72.73%), Postives = 110/121 (90.91%), Query Frame = 1

Query:  337 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNGYSEIEREKFNLINSTYKTLDQLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSCLNKELHLRTISANIGMFGAMK 699
            IL++IRNSEEL+RG IE+LEKAR RL+K+E+EAD++R+NGYSEIEREK NLIN+T  +L+QLE  KNET++FE+QRA+NQVRQRVFQQA+QGALGTLNSCLN ELH RTI ANIG+ G+++
Sbjct:   60 ILSTIRNSEELRRGTIEQLEKARIRLQKVELEADEYRMNGYSEIEREKANLINATSISLEQLEKSKNETLYFEKQRAMNQVRQRVFQQAVQGALGTLNSCLNTELHFRTIRANIGILGSLE 180

[Close]

BLAST of CV719930 vs. ExPASy Swiss-Prot
Match: ATPF_ORYSJ (ATP synthase subunit b, chloroplastic OS=Oryza sativa subsp. japonica GN=atpF PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.916e-45
Identity = 89/121 (73.55%), Postives = 109/121 (90.08%), Query Frame = 1

Query:  337 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNGYSEIEREKFNLINSTYKTLDQLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSCLNKELHLRTISANIGMFGAMK 699
            IL++IRNSEEL+RG IE+LEKAR RL+K+E+EAD++R+NGYSEIEREK NLIN+T  +L+QLE  KNET++FE+QRA+NQVRQRVFQQA+QGALGTLNSCLN ELH RTI ANI + GAM+
Sbjct:   60 ILSTIRNSEELRRGTIEQLEKARIRLQKVELEADEYRMNGYSEIEREKANLINATSISLEQLEKSKNETLYFEKQRAMNQVRQRVFQQAVQGALGTLNSCLNTELHFRTIRANISILGAME 180

[Close]

BLAST of CV719930 vs. ExPASy Swiss-Prot
Match: ATPF_ORYSI (ATP synthase subunit b, chloroplastic OS=Oryza sativa subsp. indica GN=atpF PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.916e-45
Identity = 89/121 (73.55%), Postives = 109/121 (90.08%), Query Frame = 1

Query:  337 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNGYSEIEREKFNLINSTYKTLDQLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSCLNKELHLRTISANIGMFGAMK 699
            IL++IRNSEEL+RG IE+LEKAR RL+K+E+EAD++R+NGYSEIEREK NLIN+T  +L+QLE  KNET++FE+QRA+NQVRQRVFQQA+QGALGTLNSCLN ELH RTI ANI + GAM+
Sbjct:   60 ILSTIRNSEELRRGTIEQLEKARIRLQKVELEADEYRMNGYSEIEREKANLINATSISLEQLEKSKNETLYFEKQRAMNQVRQRVFQQAVQGALGTLNSCLNTELHFRTIRANISILGAME 180

[Close]

BLAST of CV719930 vs. ExPASy Swiss-Prot
Match: ATPF_ORYSA (ATP synthase subunit b, chloroplastic OS=Oryza sativa GN=atpF PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.916e-45
Identity = 89/121 (73.55%), Postives = 109/121 (90.08%), Query Frame = 1

Query:  337 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNGYSEIEREKFNLINSTYKTLDQLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSCLNKELHLRTISANIGMFGAMK 699
            IL++IRNSEEL+RG IE+LEKAR RL+K+E+EAD++R+NGYSEIEREK NLIN+T  +L+QLE  KNET++FE+QRA+NQVRQRVFQQA+QGALGTLNSCLN ELH RTI ANI + GAM+
Sbjct:   60 ILSTIRNSEELRRGTIEQLEKARIRLQKVELEADEYRMNGYSEIEREKANLINATSISLEQLEKSKNETLYFEKQRAMNQVRQRVFQQAVQGALGTLNSCLNTELHFRTIRANISILGAME 180

[Close]

BLAST of CV719930 vs. ExPASy Swiss-Prot
Match: ATPF_ORYNI (ATP synthase subunit b, chloroplastic OS=Oryza nivara GN=atpF PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.916e-45
Identity = 89/121 (73.55%), Postives = 109/121 (90.08%), Query Frame = 1

Query:  337 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNGYSEIEREKFNLINSTYKTLDQLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSCLNKELHLRTISANIGMFGAMK 699
            IL++IRNSEEL+RG IE+LEKAR RL+K+E+EAD++R+NGYSEIEREK NLIN+T  +L+QLE  KNET++FE+QRA+NQVRQRVFQQA+QGALGTLNSCLN ELH RTI ANI + GAM+
Sbjct:   60 ILSTIRNSEELRRGTIEQLEKARIRLQKVELEADEYRMNGYSEIEREKANLINATSISLEQLEKSKNETLYFEKQRAMNQVRQRVFQQAVQGALGTLNSCLNTELHFRTIRANISILGAME 180

[Close]

BLAST of CV719930 vs. ExPASy Swiss-Prot
Match: ATPF_HORVU (ATP synthase subunit b, chloroplastic OS=Hordeum vulgare GN=atpF PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.916e-45
Identity = 88/121 (72.73%), Postives = 110/121 (90.91%), Query Frame = 1

Query:  337 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNGYSEIEREKFNLINSTYKTLDQLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSCLNKELHLRTISANIGMFGAMK 699
            IL++IRNSEEL+RG IE+LEKAR RL+K+E+EAD++R+NGYSEIEREK NLIN+T  +L+QLE  KNET++FE+QRA+NQVRQRVFQQA+QGALGTLNSCLN ELH RTI ANIG+ G+++
Sbjct:   60 ILSTIRNSEELRRGTIEQLEKARIRLQKVELEADEYRMNGYSEIEREKANLINATSISLEQLEKSKNETLYFEKQRAMNQVRQRVFQQAVQGALGTLNSCLNTELHFRTIRANIGILGSLE 180

[Close]

BLAST of CV719930 vs. ExPASy Swiss-Prot
Match: ATPF_SACOF (ATP synthase subunit b, chloroplastic OS=Saccharum officinarum GN=atpF PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 7.726e-45
Identity = 88/121 (72.73%), Postives = 110/121 (90.91%), Query Frame = 1

Query:  337 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNGYSEIEREKFNLINSTYKTLDQLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSCLNKELHLRTISANIGMFGAMK 699
            IL++IRNSEEL+RG +E+LEKAR RL+K+E+EAD++R+NGYSEIEREK NLIN+T  +L+QLE  KNET++FE+QRA+NQVRQRVFQQA+QGALGTLNSCLN ELH RTI ANIG+ GA++
Sbjct:   60 ILSTIRNSEELRRGTLEQLEKARIRLQKVELEADEYRMNGYSEIEREKENLINATSISLEQLEKSKNETLYFEKQRAMNQVRQRVFQQAVQGALGTLNSCLNTELHFRTIRANIGILGAIE 180

[Close]

BLAST of CV719930 vs. ExPASy Swiss-Prot
Match: ATPF_SACHY (ATP synthase subunit b, chloroplastic OS=Saccharum hybrid GN=atpF PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 7.726e-45
Identity = 88/121 (72.73%), Postives = 110/121 (90.91%), Query Frame = 1

Query:  337 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNGYSEIEREKFNLINSTYKTLDQLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSCLNKELHLRTISANIGMFGAMK 699
            IL++IRNSEEL+RG +E+LEKAR RL+K+E+EAD++R+NGYSEIEREK NLIN+T  +L+QLE  KNET++FE+QRA+NQVRQRVFQQA+QGALGTLNSCLN ELH RTI ANIG+ GA++
Sbjct:   60 ILSTIRNSEELRRGTLEQLEKARIRLQKVELEADEYRMNGYSEIEREKENLINATSISLEQLEKSKNETLYFEKQRAMNQVRQRVFQQAVQGALGTLNSCLNTELHFRTIRANIGILGAIE 180

[Close]

BLAST of CV719930 vs. ExPASy Swiss-Prot
Match: ATPF_CUSRE (ATP synthase subunit b, plastid OS=Cuscuta reflexa GN=atpF PE=2 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 7.726e-45
Identity = 91/125 (72.80%), Postives = 105/125 (84.00%), Query Frame = 1

Query:  337 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNGYSEIEREKFNLINSTYKTLDQLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSCLNKELHLRTISANIGMFGAMKEITD 711
            IL +I+NSEEL  GA+E+LEKARARLRK++ EA+QF VNGY +IE+EK NLI STY TL+QLEN KNE + FEQQR I QVRQR FQ+ALQ A+GTLN CLN ELHLRTISANIGM G +KEITD
Sbjct:   60 ILKTIQNSEELGVGAVEKLEKARARLRKVKTEAEQFLVNGYFDIEQEKLNLIKSTYNTLEQLENDKNENLRFEQQRVIYQVRQRFFQKALQRAIGTLNGCLNNELHLRTISANIGMLGTIKEITD 184

The following BLAST results are available for this feature:

BLAST of CV719930 vs. ExPASy Swiss-Prot

BLAST of CV719930 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105


Match Name	E-value	Identity	Description
ATPF_LOLPR	4.529e-45	72.73	ATP synthase subunit b, chloroplastic OS=Lolium pe...	[more]
ATPF_WHEAT	5.916e-45	72.73	ATP synthase subunit b, chloroplastic OS=Triticum ...	[more]
ATPF_ORYSJ	5.916e-45	73.55	ATP synthase subunit b, chloroplastic OS=Oryza sat...	[more]
ATPF_ORYSI	5.916e-45	73.55	ATP synthase subunit b, chloroplastic OS=Oryza sat...	[more]
ATPF_ORYSA	5.916e-45	73.55	ATP synthase subunit b, chloroplastic OS=Oryza sat...	[more]
ATPF_ORYNI	5.916e-45	73.55	ATP synthase subunit b, chloroplastic OS=Oryza niv...	[more]
ATPF_HORVU	5.916e-45	72.73	ATP synthase subunit b, chloroplastic OS=Hordeum v...	[more]
ATPF_SACOF	7.726e-45	72.73	ATP synthase subunit b, chloroplastic OS=Saccharum...	[more]
ATPF_SACHY	7.726e-45	72.73	ATP synthase subunit b, chloroplastic OS=Saccharum...	[more]
ATPF_CUSRE	7.726e-45	72.80	ATP synthase subunit b, plastid OS=Cuscuta reflexa...	[more]

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Properties


Property Name	Value
Genbank description	UCRCS08_0012K16_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0012K16, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CV719930 ID=CV719930; Name=CV719930; organism=Citrus sinensis; type=EST; length=750bp
TTTGGATTTGAAGAAAAAAAGAAACAACTTTGCTGACAATTATATATTTT
GATTTGGTCAGAAGAGTCCTCCGAATATTCTGTTCTTGGATTAGGGATCA
GTCGCAAGATTCATTTTGGAATATGAATAGAGAAGAGAGGGAGAGGATAG
GCTCATTACATTAAAAAAAGATATGGGAACCCCCCCCATACATAAGTAGT
TGACGTAATTGAGTGGGAGAGCCAAATGAATCGAAAAATTCATGTTTGGT
TCGGGAAGGGATCATCGAAGTTTTGAGATGAATGGAAAGATAATCTACTT
TCATTAAGTGATTTATTAGATAATCGCAAACTGAGGATTTTGAATAGTAT
TCGAAATTCAGAAGAACTGCAGAGAGGGGCCATTGAACGGCTGGAAAAAG
CCCGGGCCCGGTTACGAAAAATAGAAATAGAAGCAGATCAGTTTCGAGTG
AATGGATACTCTGAGATAGAACGAGAAAAATTCAATTTGATTAATTCAAC
TTATAAGACTTTGGATCAATTAGAAAATTACAAAAATGAAACCATTCATT
TTGAACAACAAAGAGCAATTAATCAAGTCCGACAACGGGTTTTCCAACAA
GCTTTACAAGGAGCGCTCGGAACTCTGAATAGTTGTTTGAACAAGGAGTT
ACATTTACGTACCATTAGTGCCAATATTGGCATGTTTGGAGCGATGAAAG
AAATAACTGATTAGTCCTTTTACTGTAGGCACATTATTTTTTTTTTTTTT