CV719930

Overview
NameCV719930
Unique NameCV719930
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length750
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV719930 vs. ExPASy Swiss-Prot
Match: ATPF_GNEPA (ATP synthase subunit b, chloroplastic OS=Gnetum parvifolium GN=atpF PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.014e-28
Identity = 66/121 (54.55%), Postives = 89/121 (73.55%), Query Frame = 1
Query:  337 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNGYSEIEREKFNLINSTYKTLDQLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSCLNKELHLRTISANIGMFGAMK 699
            I ++I+NSEEL +GA  +LEKARARL++IE+  D+ R NGY +IE+EK +L+ +    L QLE+ KNET+ FEQQ+ I+QVRQ+V  QALQ AL  + +CLN ELHLR I+ NIG   A +
Sbjct:   60 IYSTIQNSEELCKGARHQLEKARARLQEIEMRVDEIRANGYLQIEQEKEDLVQAASVNLKQLEDSKNETVSFEQQKVIDQVRQQVSYQALQKALTFMKNCLNTELHLRMINYNIGRLRAKR 180          
BLAST of CV719930 vs. ExPASy Swiss-Prot
Match: ATPF_ANGEV (ATP synthase subunit b, chloroplastic OS=Angiopteris evecta GN=atpF PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.052e-25
Identity = 61/125 (48.80%), Postives = 90/125 (72.00%), Query Frame = 1
Query:  337 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNGYSEIEREKFNLINSTYKTLDQLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSCLNKELHLRTISANIGMFGAMKEITD 711
            IL++I ++EE    A E+L +AR RL++ +++AD+ RVNG +++EREK +LIN+  +   +LE+ KN TI FE+QRAI QVRQ+V + AL+ AL +LN+ LN ELH R I  +IG+  AM+  TD
Sbjct:   60 ILSTIHDAEERYEEATEKLNQARTRLQQAKVKADEIRVNGLTQMEREKQDLINAADEDSRRLEDSKNSTIRFEEQRAIEQVRQQVSRLALERALESLNTRLNNELHSRMIDYHIGLLRAMESTTD 184          
BLAST of CV719930 vs. ExPASy Swiss-Prot
Match: ATPF_PHYPA (ATP synthase subunit b, chloroplastic OS=Physcomitrella patens GN=atpF PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.206e-25
Identity = 61/125 (48.80%), Postives = 87/125 (69.60%), Query Frame = 1
Query:  337 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNGYSEIEREKFNLINSTYKTLDQLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSCLNKELHLRTISANIGMFGAMKEITD 711
            IL++I+++EE    A ++L +AR RL + +++AD+ RVNG S+IEREK  LIN+  +   +LE+ KN TI FE+QRAI QVRQ+V + AL+ AL  LN  LN ELH R I  +IG+  AM+  +D
Sbjct:   60 ILSTIKDAEERYNEATDKLNQARERLERAKVKADEIRVNGLSQIEREKKELINAADEDSKRLEDSKNATIRFEEQRAIEQVRQQVSRLALERALEALNKRLNSELHSRVIDYHIGLLRAMESTSD 184          
BLAST of CV719930 vs. ExPASy Swiss-Prot
Match: ATPF_ANEMR (ATP synthase subunit b, chloroplastic OS=Aneura mirabilis GN=atpF PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.978e-24
Identity = 59/125 (47.20%), Postives = 88/125 (70.40%), Query Frame = 1
Query:  337 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNGYSEIEREKFNLINSTYKTLDQLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSCLNKELHLRTISANIGMFGAMKEITD 711
            I N+IR++EE  + A ++LE+A+ RL + E++A   R +G S++E+EK +LI+ T   L +LE+ KN TI  E+QRAI QV+Q+V + AL+  L TL +CL+ ELHLR I  NIG+  AM+ +TD
Sbjct:   60 ISNTIRDAEERYKEATQKLEQAKIRLEQAEMKARNIRTSGLSQMEKEKKDLIDGTNGDLRRLEDSKNATIRSEKQRAIEQVQQQVSRSALERTLETLKNCLDNELHLRMIDHNIGLLRAMESVTD 184          
BLAST of CV719930 vs. ExPASy Swiss-Prot
Match: ATPF_MARPO (ATP synthase subunit b, chloroplastic OS=Marchantia polymorpha GN=atpF PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.584e-24
Identity = 60/121 (49.59%), Postives = 88/121 (72.73%), Query Frame = 1
Query:  337 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNGYSEIEREKFNLINSTYKTLDQLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSCLNKELHLRTISANIGMFGAMK 699
            ILN+I+++EE  + A ++L +AR RL++ + +AD  R+NG S++E+EK +LIN+  +   +LE+ KN TI FE+QRAI QVRQ+V + AL+ AL TL S LN ELHLR I  +IG+  AM+
Sbjct:   60 ILNTIQDAEERYKEATDKLNQARTRLQQAKQKADDIRINGLSQMEKEKQDLINAADEDSKRLEDSKNATIRFEKQRAIEQVRQQVSRLALERALETLKSRLNSELHLRMIDYHIGLLRAME 180          
BLAST of CV719930 vs. ExPASy Swiss-Prot
Match: ATPF_ANTFO (ATP synthase subunit b, chloroplastic OS=Anthoceros formosae GN=atpF PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.584e-24
Identity = 59/125 (47.20%), Postives = 89/125 (71.20%), Query Frame = 1
Query:  337 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNGYSEIEREKFNLINSTYKTLDQLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSCLNKELHLRTISANIGMFGAMKEITD 711
            IL++IR++EE  + A ++L++A+ RL++ E++A++ RVNG SE+E+EK +LIN   +   +LE+ KN TI FE+QRAI QVRQ+V + AL+ A   LN+CLN ELH R I  +IG+   M   T+
Sbjct:   60 ILSTIRDAEERYKEATDKLKQAQIRLQQAELKANEIRVNGLSEMEKEKQDLINIADEDSKRLEDSKNATIRFEEQRAIEQVRQQVSRLALERASEVLNNCLNSELHSRMIDYHIGLLKTMGSTTE 184          
BLAST of CV719930 vs. ExPASy Swiss-Prot
Match: ATPF_PSINU (ATP synthase subunit b, chloroplastic OS=Psilotum nudum GN=atpF PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.159e-22
Identity = 57/125 (45.60%), Postives = 86/125 (68.80%), Query Frame = 1
Query:  337 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNGYSEIEREKFNLINSTYKTLDQLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSCLNKELHLRTISANIGMFGAMKEITD 711
            IL++IR++EE  R A ++L++ARARL++ +++A + R NG + +EREK +LIN+  +   +LE  KN TI FE+QRAI QVRQ+V + AL+  L +L S  N ELH R I  +I +  +M+  TD
Sbjct:   60 ILSTIRDAEERYREATDKLKQARARLQQAKVKAGEIRSNGLARMEREKQDLINAADEDSKRLEESKNSTIRFEEQRAIEQVRQQVSRLALERVLESLKSRFNSELHSRMIDYHIDLIKSMEGTTD 184          
BLAST of CV719930 vs. ExPASy Swiss-Prot
Match: ATPF_CHAGL (ATP synthase subunit b, chloroplastic OS=Chaetosphaeridium globosum GN=atpF PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.200e-21
Identity = 53/125 (42.40%), Postives = 86/125 (68.80%), Query Frame = 1
Query:  337 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNGYSEIEREKFNLINSTYKTLDQLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSCLNKELHLRTISANIGMFGAMKEITD 711
            IL++IR++E+  + A  +L++A+ RL + +++AD+ R+ G +++EREK  LI +  +   +LE  KN TI FEQQRAI QVRQ+V + AL+ AL TLN+ LN +L  R I  +IG+   ++ +T+
Sbjct:   64 ILSTIRDAEQCYQEAAAKLKQAKLRLEQAKLKADEIRIQGLAQLEREKLELIKAADEDSKRLEESKNVTIRFEQQRAIEQVRQQVSRLALERALETLNNSLNPDLQARIIDNHIGLLRTIEGVTE 188          
BLAST of CV719930 vs. ExPASy Swiss-Prot
Match: ATPF_ZYGCR (ATP synthase subunit b, chloroplastic OS=Zygnema circumcarinatum GN=atpF PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.674e-21
Identity = 54/125 (43.20%), Postives = 86/125 (68.80%), Query Frame = 1
Query:  337 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNGYSEIEREKFNLINSTYKTLDQLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSCLNKELHLRTISANIGMFGAMKEITD 711
            I+N+IR++EE  + A E+L KA  RL + + +A++ RVNG +++E EK  LI +  +   +LE+ KN T+ FE+QRAI QVRQ+V + AL+ AL TL + LN++LH + I  +IG+  +M+ + D
Sbjct:   64 IVNTIRDAEERYQEATEKLNKAYTRLEQAKAKAEEIRVNGLAQMEIEKQELIKAADEDSKRLEDSKNATLRFEEQRAIEQVRQQVSRLALELALETLKTRLNRDLHAQMIDYHIGLLQSMESVID 188          
BLAST of CV719930 vs. ExPASy Swiss-Prot
Match: ATPF_STAPU (ATP synthase subunit b, chloroplastic OS=Staurastrum punctulatum GN=atpF PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.264e-20
Identity = 53/121 (43.80%), Postives = 83/121 (68.60%), Query Frame = 1
Query:  337 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNGYSEIEREKFNLINSTYKTLDQLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSCLNKELHLRTISANIGMFGAMK 699
            IL++IR++EE  + AIE+L +AR +L + + +A++ RVNG  ++EREK  LI +  +   +LE  KN TI F +Q+AI Q+RQ++ +  ++ AL  +NS LN +LH R I  +IG+F AMK
Sbjct:   60 ILSTIRDAEERYQEAIEKLNQARTQLEQAKAKAEEIRVNGVLQMEREKQELIKAADEDSKRLEETKNLTIRFAEQKAIVQIRQQISRLTVKRALEIINSRLNLDLHARMIDYHIGLFKAMK 180          
The following BLAST results are available for this feature:
BLAST of CV719930 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
ATPF_GNEPA1.014e-2854.55ATP synthase subunit b, chloroplastic OS=Gnetum pa... [more]
ATPF_ANGEV3.052e-2548.80ATP synthase subunit b, chloroplastic OS=Angiopter... [more]
ATPF_PHYPA5.206e-2548.80ATP synthase subunit b, chloroplastic OS=Physcomit... [more]
ATPF_ANEMR1.978e-2447.20ATP synthase subunit b, chloroplastic OS=Aneura mi... [more]
ATPF_MARPO2.584e-2449.59ATP synthase subunit b, chloroplastic OS=Marchanti... [more]
ATPF_ANTFO2.584e-2447.20ATP synthase subunit b, chloroplastic OS=Anthocero... [more]
ATPF_PSINU3.159e-2245.60ATP synthase subunit b, chloroplastic OS=Psilotum ... [more]
ATPF_CHAGL1.200e-2142.40ATP synthase subunit b, chloroplastic OS=Chaetosph... [more]
ATPF_ZYGCR2.674e-2143.20ATP synthase subunit b, chloroplastic OS=Zygnema c... [more]
ATPF_STAPU2.264e-2043.80ATP synthase subunit b, chloroplastic OS=Staurastr... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0012K16_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0012K16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV719930 ID=CV719930; Name=CV719930; organism=Citrus sinensis; type=EST; length=750bp
TTTGGATTTGAAGAAAAAAAGAAACAACTTTGCTGACAATTATATATTTT
GATTTGGTCAGAAGAGTCCTCCGAATATTCTGTTCTTGGATTAGGGATCA
GTCGCAAGATTCATTTTGGAATATGAATAGAGAAGAGAGGGAGAGGATAG
GCTCATTACATTAAAAAAAGATATGGGAACCCCCCCCATACATAAGTAGT
TGACGTAATTGAGTGGGAGAGCCAAATGAATCGAAAAATTCATGTTTGGT
TCGGGAAGGGATCATCGAAGTTTTGAGATGAATGGAAAGATAATCTACTT
TCATTAAGTGATTTATTAGATAATCGCAAACTGAGGATTTTGAATAGTAT
TCGAAATTCAGAAGAACTGCAGAGAGGGGCCATTGAACGGCTGGAAAAAG
CCCGGGCCCGGTTACGAAAAATAGAAATAGAAGCAGATCAGTTTCGAGTG
AATGGATACTCTGAGATAGAACGAGAAAAATTCAATTTGATTAATTCAAC
TTATAAGACTTTGGATCAATTAGAAAATTACAAAAATGAAACCATTCATT
TTGAACAACAAAGAGCAATTAATCAAGTCCGACAACGGGTTTTCCAACAA
GCTTTACAAGGAGCGCTCGGAACTCTGAATAGTTGTTTGAACAAGGAGTT
ACATTTACGTACCATTAGTGCCAATATTGGCATGTTTGGAGCGATGAAAG
AAATAACTGATTAGTCCTTTTACTGTAGGCACATTATTTTTTTTTTTTTT
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