CV719926

Overview
NameCV719926
Unique NameCV719926
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length799
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV719926 vs. ExPASy Swiss-Prot
Match: RL23_PONAB (60S ribosomal protein L23 OS=Pongo abelii GN=RPL23 PE=2 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.142e-57
Identity = 108/130 (83.08%), Postives = 120/130 (92.31%), Query Frame = -3
Query:  261 AGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 650
            +G KFR+SLGLPV A +NCADNTGAKNLYIISVKGIKG+LNRLP+A VGDMVMATVKKGKP+LRKKV PAV++RQRK +RRKDGVF+YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPRIAS A +I
Sbjct:   10 SGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGQLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139          
BLAST of CV719926 vs. ExPASy Swiss-Prot
Match: RL23_AEDAE (60S ribosomal protein L23 OS=Aedes aegypti GN=RpL23-A PE=2 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.947e-57
Identity = 105/130 (80.77%), Postives = 120/130 (92.31%), Query Frame = -3
Query:  261 AGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 650
            AG KFR+SLGLPV A +NCADNTGAKNLY+I+V GI+GRLNRLP+A VGDM +ATVKKGKP+LRKKVMPAV++RQRKP+RR+DGVF+YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPRIAS A +I
Sbjct:   10 AGGKFRISLGLPVGAVINCADNTGAKNLYVIAVHGIRGRLNRLPAAGVGDMFVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139          
BLAST of CV719926 vs. ExPASy Swiss-Prot
Match: RL23_DROME (60S ribosomal protein L23 OS=Drosophila melanogaster GN=RpL23 PE=1 SV=2)

HSP 1 Score: 221.861 bits (564), Expect = 3.321e-57
Identity = 105/130 (80.77%), Postives = 121/130 (93.08%), Query Frame = -3
Query:  261 AGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 650
            AG KFR+SLGLPV A +NCADNTGAKNLY+I+V GI+GRLNRLP+A VGDM +ATVKKGKP+LRKKVMPAV++RQRKP+RR+DGVF+YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPRIAS A++I
Sbjct:   10 AGGKFRISLGLPVGAVMNCADNTGAKNLYVIAVHGIRGRLNRLPAAGVGDMFVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNASSI 139          
BLAST of CV719926 vs. ExPASy Swiss-Prot
Match: RL23_CANFA (60S ribosomal protein L23 OS=Canis familiaris GN=RPL23 PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 5.665e-57
Identity = 108/130 (83.08%), Postives = 118/130 (90.77%), Query Frame = -3
Query:  261 AGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 650
            +G KFR+SLGLPV A +NCADNTGAKNLYIISVKGIKGRLNRLP+A VGDMVMATVKKGKP LRKKV PAV++RQRK +RRKDGVF+YFEDNAGVIVN KGEMKGSAITGP+ KECADLWP IAS A +I
Sbjct:   10 SGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPXLRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVXKECADLWPXIASNAGSI 139          
BLAST of CV719926 vs. ExPASy Swiss-Prot
Match: RL23_SCHPO (60S ribosomal protein L23 OS=Schizosaccharomyces pombe GN=rpl23a PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.648e-56
Identity = 102/131 (77.86%), Postives = 117/131 (89.31%), Query Frame = -3
Query:  258 AGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 650
            +G K+RM+LGLPV A +NCADN+GAKNLYI+SV G   RLNRLP+A  GDMV+ATVKKGKPDLRKK+MPA++VRQRK WRRKDGV++YFEDNAGVIVNPKGEMKGSAITGP+ KECADLWPRIAS A  +V
Sbjct:    9 SGTKYRMTLGLPVQAIMNCADNSGAKNLYIVSVFGTGARLNRLPAASCGDMVLATVKKGKPDLRKKIMPAIVVRQRKAWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKECADLWPRIASNAGTVV 139          
BLAST of CV719926 vs. ExPASy Swiss-Prot
Match: RL23_YEAST (60S ribosomal protein L23 OS=Saccharomyces cerevisiae GN=RPL23A PE=1 SV=3)

HSP 1 Score: 218.779 bits (556), Expect = 2.812e-56
Identity = 101/130 (77.69%), Postives = 117/130 (90.00%), Query Frame = -3
Query:  258 GNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 647
            G KFR+SLGLPV A +NCADN+GA+NLYII+VKG   RLNRLP+A +GDMVMATVKKGKP+LRKKVMPA++VRQ K WRR+DGVF+YFEDNAGVI NPKGEMKGSAITGP+GKECADLWPR+AS +  +V
Sbjct:    8 GTKFRISLGLPVGAIMNCADNSGARNLYIIAVKGSGSRLNRLPAASLGDMVMATVKKGKPELRKKVMPAIVVRQAKSWRRRDGVFLYFEDNAGVIANPKGEMKGSAITGPVGKECADLWPRVASNSGVVV 137          
BLAST of CV719926 vs. ExPASy Swiss-Prot
Match: RL23_CAEEL (60S ribosomal protein L23 OS=Caenorhabditis elegans GN=rpl-23 PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.444e-52
Identity = 98/130 (75.38%), Postives = 115/130 (88.46%), Query Frame = -3
Query:  261 AGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 650
            +G KFR+SLGLPV A +NCADNTGAKNL++ISV GI+GRLNRLPSA VGDM + +VKKGKP+LRKKV+  V++RQRK +RRKDG F+YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPRIA+ A +I
Sbjct:   10 SGAKFRISLGLPVGAVMNCADNTGAKNLFVISVYGIRGRLNRLPSAGVGDMFVCSVKKGKPELRKKVLQGVVIRQRKQFRRKDGTFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIAANAGSI 139          
BLAST of CV719926 vs. ExPASy Swiss-Prot
Match: RL23_BRUMA (60S ribosomal protein L23 OS=Brugia malayi GN=RPL23 PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 5.487e-52
Identity = 100/130 (76.92%), Postives = 115/130 (88.46%), Query Frame = -3
Query:  261 AGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 650
            +G KFR+SLGLPV A +NCADNTGAKNL++I+V GIKGRLNRLPSA VGDM +A+VKKGKP+LRKKV+ AV+VRQRK +RR DG  +YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPRIAS A +I
Sbjct:   10 SGAKFRISLGLPVGAVMNCADNTGAKNLFVIAVSGIKGRLNRLPSAGVGDMFVASVKKGKPELRKKVLQAVVVRQRKQYRRIDGSSIYFEDNAGVIVNNKGEMKGSAITGPVTKECADLWPRIASNAGSI 139          
BLAST of CV719926 vs. ExPASy Swiss-Prot
Match: RL23_DICDI (60S ribosomal protein L23 OS=Dictyostelium discoideum GN=rpl23 PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 5.136e-50
Identity = 93/130 (71.54%), Postives = 114/130 (87.69%), Query Frame = -3
Query:  258 GNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 647
            G+ +R+SLGLPV A +N ADN+GAKNLY+I+VKGIKGRLNRLPSA VGDMVMATVKKGKP+LRKKV   ++VRQRK W+RKDGV++YFEDNAGV+ NPKGE+KG+ I GP+ KEC+DLWP++A+ A  IV
Sbjct:    8 GSNYRVSLGLPVGAVMNSADNSGAKNLYVIAVKGIKGRLNRLPSAGVGDMVMATVKKGKPELRKKVCTGLVVRQRKHWKRKDGVYIYFEDNAGVMCNPKGEVKGN-ILGPVAKECSDLWPKVATNAGTIV 136          
BLAST of CV719926 vs. ExPASy Swiss-Prot
Match: RL23_TRYCR (60S ribosomal protein L23 OS=Trypanosoma cruzi GN=RPL23 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.942e-42
Identity = 89/132 (67.42%), Postives = 106/132 (80.30%), Query Frame = -3
Query:  258 GNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKG-EMKGSAITGPIGKECA-DLWPRIASAANAIV 647
            G +FR+SL LPV A VNCADNTGAKNLYIISVKG  GRLNRLP+A +GD+VMA+VKKGKP+LR+KV+ AVI+RQRK WRRKDG  +YFEDNAGVIVN +G + + S I GP+ KE      P+I+S A AIV
Sbjct:   10 GCRFRVSLALPVGAVVNCADNTGAKNLYIISVKGYHGRLNRLPAAALGDIVMASVKKGKPELRRKVLNAVIIRQRKSWRRKDGTVIYFEDNAGVIVNSQGRDGRVSGIAGPVAKEAGRPSGPKISSHAPAIV 141          
The following BLAST results are available for this feature:
BLAST of CV719926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 378
Match NameE-valueIdentityDescription
RL23_PONAB1.142e-5783.0860S ribosomal protein L23 OS=Pongo abelii GN=RPL23... [more]
RL23_AEDAE1.947e-5780.7760S ribosomal protein L23 OS=Aedes aegypti GN=RpL2... [more]
RL23_DROME3.321e-5780.7760S ribosomal protein L23 OS=Drosophila melanogast... [more]
RL23_CANFA5.665e-5783.0860S ribosomal protein L23 OS=Canis familiaris GN=R... [more]
RL23_SCHPO1.648e-5677.8660S ribosomal protein L23 OS=Schizosaccharomyces p... [more]
RL23_YEAST2.812e-5677.6960S ribosomal protein L23 OS=Saccharomyces cerevis... [more]
RL23_CAEEL1.444e-5275.3860S ribosomal protein L23 OS=Caenorhabditis elegan... [more]
RL23_BRUMA5.487e-5276.9260S ribosomal protein L23 OS=Brugia malayi GN=RPL2... [more]
RL23_DICDI5.136e-5071.5460S ribosomal protein L23 OS=Dictyostelium discoid... [more]
RL23_TRYCR3.942e-4267.4260S ribosomal protein L23 OS=Trypanosoma cruzi GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0012K14_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0012K14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV719926 ID=CV719926; Name=CV719926; organism=Citrus sinensis; type=EST; length=799bp
CTAGAAACATATCTTGATAAAGTTGATAAAATTGAAACCGTATTGCATCG
GAAGTTGAATTCAAAAACACAATCAGCATGAAAATGATATCAAGATCAAC
AAAACTCCAAACTTTCATACCACTTACAAAACTAGAATAACAAAATCATA
CAGAAAGTTCACAGAAAAGCTTTACTCCTTCCTACTATGAAACTTCACCA
GATTTCTTTTTAGTGCAACAAAAAGGATGATATAGGTTATCGGTCTTGAA
TGTCTTAAACGATAGCATTGGCTGCACTTGCAATTCTCGGCCACAAATCA
GCACACTCTTTACCAATTGGACCGGTGATGGCAGAACCCTTCATTTCTCC
CTTTGGATTCACAATAACACCAGCATTATCTTCAAAGTACATGAAGACAC
CATCCTTTCTGCGCCATGGCTTGCGCTGCCTTACAATGACGGCGGGCATC
ACCTTCTTCCTAAGATCAGGCTTCCCTTTCTTCACGGTAGCCATAACCAT
GTCTCCAACACAGGCAGACGGCAAACGGTTGAGGCGACCTTTGATTCCCT
TAACTGAGATGATGTAAAGGTTCTTTGCCCCAGTGTTGTCAGCACAGTTC
ACAGTTGCTGCCACTGGCAAACCCAGTGACATCCTGAACTTGTTACCTGC
TGATCCTCCACGTCCTCGCTTCGACTTTTAAGAAAATTCAAACTTGTATT
TCTTTTCAATAATCACCTCGCATTTTTTATCAATCACTCAATTTCAAATT
TCATCTCCATCCTCTCTCGAAGAAGAACGCACAAAGAATTTCAGCTTGC
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