CV719926

Overview
NameCV719926
Unique NameCV719926
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length799
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV719926 vs. ExPASy Swiss-Prot
Match: RL14_THEAC (50S ribosomal protein L14P OS=Thermoplasma acidophilum GN=rpl14p PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.736e-35
Identity = 67/126 (53.17%), Postives = 95/126 (75.40%), Query Frame = -3
Query:  258 RMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 635
            R + GLP+ A + CADNTGA+++ +I VK   G+  R+P+A VGDM MA+VKKG P++R KV+ AV++RQ++P+RR DG  + FEDNA V+V P GE++GS I GP+ +E A+ WPRIA+ A+ IV
Sbjct:    7 RQTRGLPLGANITCADNTGARSISLIDVKAWHGKARRIPAAGVGDMFMASVKKGTPEMRSKVVYAVVIRQKRPYRRPDGTMVQFEDNAAVLVTPDGEVRGSEIKGPVAREAAERWPRIAAIASIIV 132          
BLAST of CV719926 vs. ExPASy Swiss-Prot
Match: RL23_ENCCU (60S ribosomal protein L23 OS=Encephalitozoon cuniculi GN=RPL23 PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.667e-35
Identity = 67/127 (52.76%), Postives = 97/127 (76.38%), Query Frame = -3
Query:  261 KFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 641
            +++M+ G+ V   + CADN+GAK L  I VK  +GRLNRLP+A  GD+ + +VKKGKP+LRKKV  A+++RQ+K WRR DG  + FEDNA V++N KGE++G+ I GP+ +E AD+WP+I+S A++I
Sbjct:   19 RYKMTRGIQVETLMKCADNSGAKILRCIGVKRYRGRLNRLPAAAPGDICVVSVKKGKPELRKKVHYAILIRQKKIWRRTDGSHIMFEDNAAVLINNKGELRGAQIAGPVPREVADMWPKISSQASSI 145          
BLAST of CV719926 vs. ExPASy Swiss-Prot
Match: RL14_THEVO (50S ribosomal protein L14P OS=Thermoplasma volcanium GN=rpl14p PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.316e-34
Identity = 68/131 (51.91%), Postives = 97/131 (74.05%), Query Frame = -3
Query:  258 AGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 650
            AG + R   GLP+ A + CADNTGA+++ +I VK   G+  R+P+A VGDM +A+VKKG P++R KV+ AV++RQ++P+RR DG  + FEDNA V+V P GE++GS I GP+ +E A+ WPRIA+ A+ IV
Sbjct:    5 AGREIR---GLPLGANIVCADNTGARSISLIDVKAYHGKARRIPAAGVGDMFIASVKKGTPEMRSKVVYAVVIRQKRPYRRPDGTMVEFEDNAAVLVTPDGEVRGSEIKGPVAREAAERWPRIAAIASIIV 132          
BLAST of CV719926 vs. ExPASy Swiss-Prot
Match: RL14_HYPBU (50S ribosomal protein L14P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.316e-34
Identity = 69/131 (52.67%), Postives = 96/131 (73.28%), Query Frame = -3
Query:  258 AGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 650
            AG +  ++ GL V + V  ADN+GAK   II V G KGRL R+P A VGDMV+ TVKKG P++RK+V+ A+++RQR+P+RR DG ++ FEDNA VIV+P G  KGS I GP+ +E A+ WP++A+ A+ I+
Sbjct:    8 AGPRRHIAAGLQVGSYVKVADNSGAKEAMIIGVIGYKGRLRRIPPAAVGDMVVVTVKKGTPEMRKQVVRAIVIRQRRPYRRPDGTWIAFEDNAVVIVSPDGTPKGSEIRGPVAREAAERWPKVANIASIII 138          
BLAST of CV719926 vs. ExPASy Swiss-Prot
Match: RL14_METKA (50S ribosomal protein L14P OS=Methanopyrus kandleri GN=rpl14p PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.025e-34
Identity = 73/121 (60.33%), Postives = 90/121 (74.38%), Query Frame = -3
Query:  258 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 620
            LPV A + CADNTGA+ L II+VKG KG   RLP+A +GDMV+ +VK+G PD+RK+V+ AVIVRQRK +RR DG  + FEDNA VIV P G  +GS I GP+ KE A+ WPRI S A+ IV
Sbjct:   13 LPVGARLVCADNTGARELQIIAVKGYKGVRRRLPNAGIGDMVVCSVKEGTPDMRKEVVNAVIVRQRKEYRRPDGTRVKFEDNAAVIVTPDGAPRGSEIRGPVAKEAAERWPRIGSIASIIV 133          
BLAST of CV719926 vs. ExPASy Swiss-Prot
Match: RL14_METTH (50S ribosomal protein L14P OS=Methanobacterium thermoautotrophicum GN=rpl14p PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.561e-33
Identity = 70/126 (55.56%), Postives = 94/126 (74.60%), Query Frame = -3
Query:  258 RMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 635
            +++  LPV A + C DNTGA+ + IISV+G KG   RL +A VGDMV+ +VKKG  D+R++V+ AVIVRQ+K +RR DG+ + FEDNA VIV+P+G +KGS I GP+ KE AD WP + SAA+ IV
Sbjct:    7 KVTRALPVGARLQCVDNTGAREVEIISVRGYKGVRRRLAAAGVGDMVVVSVKKGTVDMRREVLNAVIVRQKKEYRRPDGLRVKFEDNAAVIVSPEGVLKGSEIRGPVAKEAADRWPSVGSAASIIV 132          
BLAST of CV719926 vs. ExPASy Swiss-Prot
Match: RL14_METST (50S ribosomal protein L14P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.345e-33
Identity = 72/125 (57.60%), Postives = 90/125 (72.00%), Query Frame = -3
Query:  258 MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 632
            +S  LP+ A + C DNTGA+ + IISVKG KG   RL SA VGDMV+ +VKKG  D+R++V  AV+VRQ+K +RR DG+ + FEDNA VI+   G +KGS I GPI KE ADLWP I SAA+ IV
Sbjct:    8 VSKSLPIGARLKCIDNTGAREVEIISVKGFKGVRRRLASAGVGDMVVISVKKGTADMRREVTTAVVVRQKKEYRRADGLRVKFEDNAAVIITEDGVLKGSEIRGPIAKEAADLWPAIGSAASIIV 132          
BLAST of CV719926 vs. ExPASy Swiss-Prot
Match: RL14_STAMF (50S ribosomal protein L14P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.368e-33
Identity = 70/131 (53.44%), Postives = 96/131 (73.28%), Query Frame = -3
Query:  258 AGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 650
            A ++ R++ GL V + V  ADN+GAK + II V G KGRL R+P A +GD+V+ TVKKG P++RK+V+ AVIVRQ++P+RR DG ++ FEDNA  IV P+G  KGS I GPI KE A+ WP++A+ A  +V
Sbjct:   10 AFSRRRIATGLQVGSYVRVADNSGAKLVKIIGVPGYKGRLRRIPPAGIGDLVVVTVKKGTPEMRKQVVKAVIVRQKRPFRRPDGTWVAFEDNAVAIVTPEGTPKGSEIRGPIAKEVAERWPQLANIATIVV 140          
BLAST of CV719926 vs. ExPASy Swiss-Prot
Match: RL14_PICTO (50S ribosomal protein L14P OS=Picrophilus torridus GN=rpl14p PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.705e-33
Identity = 66/126 (52.38%), Postives = 92/126 (73.02%), Query Frame = -3
Query:  258 RMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 635
            R + GLP+ A + C DNTGAK + +I VK +     R+P+A VGDM +A+VKKG P++R KV+ AV+VRQR+P+RR DG  + FEDNA V+V P GE++GS I GP+ +E A+ WPRIA+ ++ IV
Sbjct:    7 RETRGLPLGALIPCVDNTGAKMISLIDVKALHTVAKRIPAAGVGDMFIASVKKGTPEMRSKVVYAVVVRQRRPYRRADGTMIEFEDNAAVLVTPDGEVRGSEIKGPVAREAAERWPRIAAISSTIV 132          
BLAST of CV719926 vs. ExPASy Swiss-Prot
Match: RL14_METS3 (50S ribosomal protein L14P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 7.451e-33
Identity = 66/125 (52.80%), Postives = 92/125 (73.60%), Query Frame = -3
Query:  258 MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 632
            +S  LP+ AT+ C DNTGA+ + IISVKG KG   RL  A VGD+V+A+VKKG  D+R++V+ AV++RQ+K + R DG+ + FEDNA VI+ P+G +KGS + GP+ KE AD WP + SAA+ +V
Sbjct:    8 VSKALPIGATLQCVDNTGAREIQIISVKGFKGVRRRLDVAGVGDLVVASVKKGTADMRREVVNAVVIRQKKEYMRADGLRVKFEDNAAVIITPEGILKGSEVRGPVAKEAADRWPSVGSAASILV 132          
The following BLAST results are available for this feature:
BLAST of CV719926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 378
Match NameE-valueIdentityDescription
RL14_THEAC2.736e-3553.1750S ribosomal protein L14P OS=Thermoplasma acidoph... [more]
RL23_ENCCU4.667e-3552.7660S ribosomal protein L23 OS=Encephalitozoon cunic... [more]
RL14_THEVO2.316e-3451.9150S ribosomal protein L14P OS=Thermoplasma volcani... [more]
RL14_HYPBU2.316e-3452.6750S ribosomal protein L14P OS=Hyperthermus butylic... [more]
RL14_METKA3.025e-3460.3350S ribosomal protein L14P OS=Methanopyrus kandler... [more]
RL14_METTH2.561e-3355.5650S ribosomal protein L14P OS=Methanobacterium the... [more]
RL14_METST3.345e-3357.6050S ribosomal protein L14P OS=Methanosphaera stadt... [more]
RL14_STAMF4.368e-3353.4450S ribosomal protein L14P OS=Staphylothermus mari... [more]
RL14_PICTO5.705e-3352.3850S ribosomal protein L14P OS=Picrophilus torridus... [more]
RL14_METS37.451e-3352.8050S ribosomal protein L14P OS=Methanobrevibacter s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0012K14_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0012K14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV719926 ID=CV719926; Name=CV719926; organism=Citrus sinensis; type=EST; length=799bp
CTAGAAACATATCTTGATAAAGTTGATAAAATTGAAACCGTATTGCATCG
GAAGTTGAATTCAAAAACACAATCAGCATGAAAATGATATCAAGATCAAC
AAAACTCCAAACTTTCATACCACTTACAAAACTAGAATAACAAAATCATA
CAGAAAGTTCACAGAAAAGCTTTACTCCTTCCTACTATGAAACTTCACCA
GATTTCTTTTTAGTGCAACAAAAAGGATGATATAGGTTATCGGTCTTGAA
TGTCTTAAACGATAGCATTGGCTGCACTTGCAATTCTCGGCCACAAATCA
GCACACTCTTTACCAATTGGACCGGTGATGGCAGAACCCTTCATTTCTCC
CTTTGGATTCACAATAACACCAGCATTATCTTCAAAGTACATGAAGACAC
CATCCTTTCTGCGCCATGGCTTGCGCTGCCTTACAATGACGGCGGGCATC
ACCTTCTTCCTAAGATCAGGCTTCCCTTTCTTCACGGTAGCCATAACCAT
GTCTCCAACACAGGCAGACGGCAAACGGTTGAGGCGACCTTTGATTCCCT
TAACTGAGATGATGTAAAGGTTCTTTGCCCCAGTGTTGTCAGCACAGTTC
ACAGTTGCTGCCACTGGCAAACCCAGTGACATCCTGAACTTGTTACCTGC
TGATCCTCCACGTCCTCGCTTCGACTTTTAAGAAAATTCAAACTTGTATT
TCTTTTCAATAATCACCTCGCATTTTTTATCAATCACTCAATTTCAAATT
TCATCTCCATCCTCTCTCGAAGAAGAACGCACAAAGAATTTCAGCTTGC
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