CV719926

Overview
NameCV719926
Unique NameCV719926
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length799
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV719926 vs. ExPASy Swiss-Prot
Match: RL14_METS5 (50S ribosomal protein L14P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.461e-30
Identity = 63/115 (54.78%), Postives = 84/115 (73.04%), Query Frame = -3
Query:  258 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 602
            VN +DN+GAK   IISV G +G L R+P A VGD+VM +V+KG PD+RK+   AV++RQR P+RR DG ++ F+DNA VIVNP G  KG+ I GP+ +E A+ WP++AS A  IV
Sbjct:   24 VNVSDNSGAKEAMIISVFGYRGALRRVPYANVGDLVMVSVRKGAPDVRKQKFKAVVIRQRMPFRRPDGTWISFDDNAVVIVNPDGTAKGTEIRGPVAREAAERWPKVASLATLIV 138          
BLAST of CV719926 vs. ExPASy Swiss-Prot
Match: RL14_METM5 (50S ribosomal protein L14P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.461e-30
Identity = 63/120 (52.50%), Postives = 84/120 (70.00%), Query Frame = -3
Query:  261 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 620
            LP  A + CADNTGAK L +I+VK   G + RLP+  VG MV  +VKKG P++RK+V+PA+I+RQ+K ++R DG  + FEDNA VIV P+G  KGS I GP+ KE A+ WP ++  A  I
Sbjct:   12 LPNGARLVCADNTGAKELEVIAVKNYVGTVRRLPAGGVGHMVFVSVKKGTPEMRKQVLPAIIIRQKKEYKRADGTRVKFEDNAAVIVTPEGTPKGSEIKGPVSKEAAERWPGVSRLAKII 131          
BLAST of CV719926 vs. ExPASy Swiss-Prot
Match: RL14_IGNH4 (50S ribosomal protein L14P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.520e-30
Identity = 67/133 (50.38%), Postives = 90/133 (67.67%), Query Frame = -3
Query:  258 AGNKFRMSL--GLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 650
            + NK R  +  GL V + V   DN+GAK   II V G  GRL R+P A VGDMV+ TVKKG P++R +V+ A++VRQRKP+RR DG ++ FEDNA VIV+  G  +GS I GP+ +E  + WPRI + A+ +V
Sbjct:    5 SANKSRRKVVTGLQVGSYVKVTDNSGAKVAMIIGVPGYHGRLRRIPPAGVGDMVVVTVKKGTPEMRHQVVRAIVVRQRKPFRRPDGTWVAFEDNAVVIVSEDGTPRGSEIRGPVAREAVERWPRIGNVASIVV 137          
BLAST of CV719926 vs. ExPASy Swiss-Prot
Match: RL14_CENSY (50S ribosomal protein L14P OS=Cenarchaeum symbiosum GN=rpl14p PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.904e-30
Identity = 66/121 (54.55%), Postives = 87/121 (71.90%), Query Frame = -3
Query:  258 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 620
            LPV A V CADN+GAK L II V+  K R++RLP+A VGD V   VKKG  +LRK+V  AVI+RQ+ P RR +GV + FEDNA V+  P+GEMKG+ I GP+  E ++ WPR+A+ A+ +V
Sbjct:   24 LPVGARVTCADNSGAKVLEIIMVQKAKTRVSRLPAAAVGDYVNVVVKKGPAELRKQVHGAVIIRQKYPVRRLNGVRVAFEDNAAVLTTPEGEMKGTDIKGPVAAEASEKWPRLANLASMVV 144          
BLAST of CV719926 vs. ExPASy Swiss-Prot
Match: RL14_SULSO (50S ribosomal protein L14P OS=Sulfolobus solfataricus GN=rpl14p PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.718e-29
Identity = 64/130 (49.23%), Postives = 88/130 (67.69%), Query Frame = -3
Query:  258 GNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 647
            G++  ++  L   + VN ADN+G K   II V G +G L R+P A + DMVM ++KKG P++RK+   AVIVRQR P+RR DG ++ FEDNA VI+NP G  KG+ + GPI +E A+ WP+IAS A  +V
Sbjct:    9 GSRKGLTPALQHYSVVNVADNSGGKEAMIIGVYGYRGVLRRVPFANIADMVMVSIKKGTPEVRKQKFRAVIVRQRMPYRRPDGTWISFEDNAVVIINPDGTPKGTEVRGPIAREAAERWPKIASLATLVV 138          
BLAST of CV719926 vs. ExPASy Swiss-Prot
Match: RL14_PYRFU (50S ribosomal protein L14P OS=Pyrococcus furiosus GN=rpl14p PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.243e-29
Identity = 68/126 (53.97%), Postives = 88/126 (69.84%), Query Frame = -3
Query:  258 RMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 635
            R +  LPV A +  ADN+GAK + II V    G   RL SA VGDMV+ATVKKG+PD+R +V+ AVI+RQRK +RR DG+ + FEDNA VIV P+G  +G+ I GP+ +E A+ W RI S A+ IV
Sbjct:   16 RPTRALPVGAYLTVADNSGAKVIQIIGVVEYHGTRRRLASAGVGDMVVATVKKGRPDMRHQVVRAVIIRQRKEYRRLDGMRVKFEDNAAVIVTPEGVPRGTEIRGPVAREAAERWVRIGSIASIIV 141          
BLAST of CV719926 vs. ExPASy Swiss-Prot
Match: RL14_ARCFU (50S ribosomal protein L14P OS=Archaeoglobus fulgidus GN=rpl14p PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.827e-29
Identity = 66/121 (54.55%), Postives = 86/121 (71.07%), Query Frame = -3
Query:  258 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 620
            LP  A + CADNTGA+ L II+VKG KG   R P+A VGD+V+ TVKKG P++RK+V  AVIVRQRK +RR DG  + FEDNA VI N +GE +GS I G + +E A+ + +I + A+ IV
Sbjct:   12 LPTGARLVCADNTGARELEIIAVKGYKGVRRRYPAAGVGDIVVVTVKKGTPEIRKQVHYAVIVRQRKEYRRPDGTRVKFEDNAAVITNERGEPRGSEIRGAVAREAAERFSKIGTIASVIV 132          
BLAST of CV719926 vs. ExPASy Swiss-Prot
Match: RL14_PYRAB (50S ribosomal protein L14P OS=Pyrococcus abyssi GN=rpl14p PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.998e-29
Identity = 66/126 (52.38%), Postives = 88/126 (69.84%), Query Frame = -3
Query:  258 RMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 635
            R +  +PV A +  ADN+GAK + +I V    G   RL SA VGDMV+ATVKKG+PD+R +V+ AVI+RQRK +RR DG+ + FEDNA VIV P+G  +G+ I GP+ +E A+ W RI S A+ IV
Sbjct:   16 RPTRAIPVGAYLTVADNSGAKVIQVIGVVEYHGTRRRLASAGVGDMVVATVKKGRPDMRHQVVRAVIIRQRKEYRRLDGMRIKFEDNAAVIVTPEGVPRGTEIRGPVAREAAERWVRIGSIASIIV 141          
BLAST of CV719926 vs. ExPASy Swiss-Prot
Match: RL14_PYRHO (50S ribosomal protein L14P OS=Pyrococcus horikoshii GN=rpl14p PE=3 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 6.527e-29
Identity = 65/126 (51.59%), Postives = 88/126 (69.84%), Query Frame = -3
Query:  258 RMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 635
            R +  +P+ A +  ADN+GAK + +I V    G   RL SA VGDMV+ATVKKG+PD+R +V+ AVI+RQRK +RR DG+ + FEDNA VIV P+G  +G+ I GP+ +E A+ W RI S A+ IV
Sbjct:   16 RPTRAIPIGAYLTVADNSGAKVIQVIGVVEYHGTRRRLASAGVGDMVVATVKKGRPDMRHQVVRAVIIRQRKEYRRLDGMRVKFEDNAAVIVTPEGVPRGTEIRGPVAREAAEKWVRIGSIASIIV 141          
BLAST of CV719926 vs. ExPASy Swiss-Prot
Match: RL14_SULAC (50S ribosomal protein L14P OS=Sulfolobus acidocaldarius GN=rpl14p PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.113e-28
Identity = 60/117 (51.28%), Postives = 83/117 (70.94%), Query Frame = -3
Query:  258 ATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 608
            ++V  ADN+GAK   II + G +G L R+P A + D+VM +V+KG PD+RK+   AVIVRQR P+RR DG ++ FEDNA VI+NP G  KG+ + GPI +E A+ WP+IAS A  ++
Sbjct:   22 SSVVVADNSGAKEAVIIGIYGYRGVLRRVPFANIADLVMVSVRKGSPDVRKQKFKAVIVRQRMPFRRPDGTWISFEDNAVVIINPDGTPKGTEVRGPIAREAAERWPKIASVATMVI 138          
The following BLAST results are available for this feature:
BLAST of CV719926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 378
Match NameE-valueIdentityDescription
RL14_METS53.461e-3054.7850S ribosomal protein L14P OS=Metallosphaera sedul... [more]
RL14_METM53.461e-3052.5050S ribosomal protein L14P OS=Methanococcus maripa... [more]
RL14_IGNH44.520e-3050.3850S ribosomal protein L14P OS=Ignicoccus hospitali... [more]
RL14_CENSY5.904e-3054.5550S ribosomal protein L14P OS=Cenarchaeum symbiosu... [more]
RL14_SULSO1.718e-2949.2350S ribosomal protein L14P OS=Sulfolobus solfatari... [more]
RL14_PYRFU2.243e-2953.9750S ribosomal protein L14P OS=Pyrococcus furiosus ... [more]
RL14_ARCFU3.827e-2954.5550S ribosomal protein L14P OS=Archaeoglobus fulgid... [more]
RL14_PYRAB4.998e-2952.3850S ribosomal protein L14P OS=Pyrococcus abyssi GN... [more]
RL14_PYRHO6.527e-2951.5950S ribosomal protein L14P OS=Pyrococcus horikoshi... [more]
RL14_SULAC1.113e-2851.2850S ribosomal protein L14P OS=Sulfolobus acidocald... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0012K14_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0012K14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV719926 ID=CV719926; Name=CV719926; organism=Citrus sinensis; type=EST; length=799bp
CTAGAAACATATCTTGATAAAGTTGATAAAATTGAAACCGTATTGCATCG
GAAGTTGAATTCAAAAACACAATCAGCATGAAAATGATATCAAGATCAAC
AAAACTCCAAACTTTCATACCACTTACAAAACTAGAATAACAAAATCATA
CAGAAAGTTCACAGAAAAGCTTTACTCCTTCCTACTATGAAACTTCACCA
GATTTCTTTTTAGTGCAACAAAAAGGATGATATAGGTTATCGGTCTTGAA
TGTCTTAAACGATAGCATTGGCTGCACTTGCAATTCTCGGCCACAAATCA
GCACACTCTTTACCAATTGGACCGGTGATGGCAGAACCCTTCATTTCTCC
CTTTGGATTCACAATAACACCAGCATTATCTTCAAAGTACATGAAGACAC
CATCCTTTCTGCGCCATGGCTTGCGCTGCCTTACAATGACGGCGGGCATC
ACCTTCTTCCTAAGATCAGGCTTCCCTTTCTTCACGGTAGCCATAACCAT
GTCTCCAACACAGGCAGACGGCAAACGGTTGAGGCGACCTTTGATTCCCT
TAACTGAGATGATGTAAAGGTTCTTTGCCCCAGTGTTGTCAGCACAGTTC
ACAGTTGCTGCCACTGGCAAACCCAGTGACATCCTGAACTTGTTACCTGC
TGATCCTCCACGTCCTCGCTTCGACTTTTAAGAAAATTCAAACTTGTATT
TCTTTTCAATAATCACCTCGCATTTTTTATCAATCACTCAATTTCAAATT
TCATCTCCATCCTCTCTCGAAGAAGAACGCACAAAGAATTTCAGCTTGC
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