CX673402

Overview
NameCX673402
Unique NameCX673402
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length808
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX673402 vs. ExPASy Swiss-Prot
Match: TKTL2_MOUSE (Transketolase-like protein 2 OS=Mus musculus GN=Tktl2 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.793e-13
Identity = 57/178 (32.02%), Postives = 81/178 (45.51%), Query Frame = 2
Query:  284 ETLETSTDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPG---IEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNDIVDHYTYVILGDGCQMEGIANEA 808
            +TL+   D A      N +R  ++ A    +SGHP      A +  +L+   MRY   +P   + DRFVLS GH   + YA+    G   + E DL N R+      GHP    TP    ++V TG LGQG+  A G+A   K+          D   +  + ++GDG   EG   EA
Sbjct:   12 DTLQVLQDVA------NRLRIHSIRATCACSSGHPTSCCSVAEIMAVLFFHTMRYKQADPEHPDNDRFVLSKGHAAPILYAVWVEVG--RICESDLLNLRKIHCDLEGHP----TPRLSFVDVATGSLGQGLGAACGMAYTGKYF---------DKASYRVFCLMGDGESSEGSVWEA 168          
BLAST of CX673402 vs. ExPASy Swiss-Prot
Match: Y4MO_RHISN (Putative uncharacterized transketolase family protein y4mO OS=Rhizobium sp. (strain NGR234) GN=NGR_a02440 PE=5 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.364e-12
Identity = 52/157 (33.12%), Postives = 73/157 (46.50%), Query Frame = 2
Query:  338 IRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNDIVDHYTYVILGDGCQMEGIANEA 808
            IR  A+   E    G+    +G A +  + Y     Y P +P W  RDRF+LS GH  +  YA L  A    + ED+L+ +    S+ P       TPG+E+T G LG G+  AVG++LA K   +R           + Y +  DG   EG   EA
Sbjct:   17 IRRHALRMGEVQGQGYIAQALGIADVLAVAYFHATTYRPDDPEWEGRDRFLLSIGHYAIALYAALIEA--KIIPEDELETYGADDSRLPMSGMAAYTPGMEITGGSLGHGLGIAVGMSLALKRKGSR----------SFVYNLFSDGELDEGSTWEA 161          
BLAST of CX673402 vs. ExPASy Swiss-Prot
Match: TKTL2_HUMAN (Transketolase-like protein 2 OS=Homo sapiens GN=TKTL2 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.700e-12
Identity = 53/176 (30.11%), Postives = 79/176 (44.89%), Query Frame = 2
Query:  281 VETLETSTDAALVEKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQEDDLKNFRQWGSKTPGHPENFETPGIEVTTGPLGQGMANAVGLALAEKHLAARYNKPDNDIVDHYTYVILGDGCQMEGIANEA 808
            V+T++   D A      N +R  ++ A   + SG        A +  +L+   M+Y   +P   + DRF+LS GH   + YA     G   + E DL N R+  S    HP     P ++V TG LGQG+  A G+A   K+L         D   +  + ++GDG   EG   EA
Sbjct:   10 VKTVQVLRDTA------NRLRIHSIRATCASGSGQLTSCCSAAEVVSVLFFHTMKYKQTDPEHPDNDRFILSRGHAAPILYAAWVEVG--DISESDLLNLRKLHSDLERHPTP-RLPFVDVATGSLGQGLGTACGMAYTGKYL---------DKASYRVFCLMGDGESSEGSVWEA 167          
The following BLAST results are available for this feature:
BLAST of CX673402 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
TKTL2_MOUSE8.793e-1332.02Transketolase-like protein 2 OS=Mus musculus GN=Tk... [more]
Y4MO_RHISN4.364e-1233.12Putative uncharacterized transketolase family prot... [more]
TKTL2_HUMAN5.700e-1230.11Transketolase-like protein 2 OS=Homo sapiens GN=TK... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_22D12_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-22D12-H24-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX673402 ID=CX673402; Name=CX673402; organism=Citrus sinensis; type=EST; length=808bp
CAGAAGGCGAGCTCAACCTCTCTCTCTCTCTCTCTCTCTCTCTCAAAACA
AAACAATGGCTTCTTCATCTTCTTTCACTCTATCCCAAGCCCTTCTGACC
AGAGGCACTTCTCACCATGGCTTCACTCAATCATCAGAGCACCATCGTCT
CGCTCTCTCTACACTCTCTCTCCCTTCCTTTTCCGGCCTCAAATCCACCT
CCTCTTCCACCCTACGCACCCCCACCTCCCGCCGCCGCCTCTCCACCAGC
CAAGCCAGCCGACCCATCCGCGCAGCGGCCGTAGAAACACTCGAAACCTC
GACTGATGCCGCTTTGGTTGAGAAATCAGTCAACACCATTAGATTCTTGG
CTGTCGACGCCGTCGAGAAGGCCAATTCGGGTCACCCGGGATTGCCCATG
GGATGTGCTCCTATGGGTCATATTTTGTATGATGAGGTCATGAGATACAA
CCCCAAAAACCCCTACTGGTTTAACCGTGACCGCTTCGTTTTGTCCGCCG
GACATGGCTGCATGTTGCAGTACGCTCTCCTTCACCTTGCTGGTTACGAC
AGTGTCCAGGAAGACGACTTGAAGAATTTCAGACAATGGGGAAGCAAAAC
ACCTGGACACCCAGAAAACTTTGAGACACCTGGTATCGAGGTCACAACTG
GTCCTCTTGGCCAGGGTATGGCGAATGCTGTTGGTTTGGCTCTTGCAGAG
AAGCATTTGGCTGCTCGATACAACAAGCCTGACAATGATATTGTTGACCA
CTACACATATGTGATACTGGGAGATGGGTGCCAAATGGAGGGGATTGCAA
ATGAGGCT
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