EY665193

Overview
NameEY665193
Unique NameEY665193
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1015
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY665193 vs. ExPASy Swiss-Prot
Match: AQP4_RAT (Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.805e-11
Identity = 32/64 (50.00%), Postives = 42/64 (65.62%), Query Frame = 1 
Query:   28 LPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYI 219
            L IGF+V + HL  I  TG  +NPARSFG AVI      W++ WI+WVGP IGA +A   ++Y+
Sbjct:  191 LAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGN---WENHWIYWVGPIIGAVLAGALYEYV 251
[Close]
BLAST of EY665193 vs. ExPASy Swiss-Prot
Match: AQP4_NOTAL (Aquaporin-4 OS=Notomys alexis GN=AQP4 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.805e-11
Identity = 32/64 (50.00%), Postives = 42/64 (65.62%), Query Frame = 1 
Query:   28 LPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYI 219
            L IGF+V + HL  I  TG  +NPARSFG AVI      W++ WI+WVGP IGA +A   ++Y+
Sbjct:  194 LAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGN---WENHWIYWVGPIIGAVLAGALYEYV 254
[Close]
BLAST of EY665193 vs. ExPASy Swiss-Prot
Match: AQP4_HUMAN (Aquaporin-4 OS=Homo sapiens GN=AQP4 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 8.888e-11
Identity = 32/64 (50.00%), Postives = 42/64 (65.62%), Query Frame = 1 
Query:   28 LPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYI 219
            L IGF+V + HL  I  TG  +NPARSFG AVI      W++ WI+WVGP IGA +A   ++Y+
Sbjct:  191 LAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGN---WENHWIYWVGPIIGAVLAGGLYEYV 251
[Close]
BLAST of EY665193 vs. ExPASy Swiss-Prot
Match: AQP4_DIPME (Aquaporin-4 OS=Dipodomys merriami GN=AQP4 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.888e-11
Identity = 32/64 (50.00%), Postives = 42/64 (65.62%), Query Frame = 1 
Query:   28 LPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYI 219
            L IGF+V + HL  I  TG  +NPARSFG AVI      W++ WI+WVGP IGA +A   ++Y+
Sbjct:  191 LAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGN---WENHWIYWVGPIIGAVLAGGLYEYV 251
The following BLAST results are available for this feature:
BLAST of EY665193 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
AQP4_RAT6.805e-1150.00Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1[more]
AQP4_NOTAL6.805e-1150.00Aquaporin-4 OS=Notomys alexis GN=AQP4 PE=2 SV=1[more]
AQP4_HUMAN8.888e-1150.00Aquaporin-4 OS=Homo sapiens GN=AQP4 PE=1 SV=2[more]
AQP4_DIPME8.888e-1150.00Aquaporin-4 OS=Dipodomys merriami GN=AQP4 PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-083-B02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665193 ID=EY665193; Name=EY665193; organism=Citrus sinensis; type=EST; length=1015bp
GACTCCCATGTTCCGGTCTTGGCACCACTCCCCATTGGGTTTGCTGTGTT
CATGGTTCACTTGGCCACCATCCCCATCACCGGAACCGGCATCAACCCAG
CTAGGAGTTTTGGAGCTGCTGTGATCTACAACAAGGAGAAAGCCTGGGAT
GACCAATGGATCTTCTGGGTTGGACCATTCATTGGAGCTTTCGTTGCTGC
ATTCTACCACCAATACATTCTCAGGGCAGCAGCCATTAAGGCTCTTGGAT
CCTTCAGGAGCAATGCTTAAGCTTTAAATATGATGTCTGGTGCTTCCAAG
GTGAAAAATTTACAGCATGATCAGGAGTGCAAGTCTGTTACGAAGGCCCC
TTTAAGAAATCTCTTTTCAAGCTCTTTAGAGGGCCATTGAATTTGAGCTG
AGTTAAAGGGCTATTGAATTGTAAATATTTTGAACATTATGCATTTTATG
CCTATGCTTTATCTATGTGTAAGGGTGGAATTTGAAATCCCATTTAAATT
TTTTCCTTTGGGAGGGGATAAAAATGGGTGAGGGTGATAATAAATAATCC
AATTTCACCAAAATTTTCTAAAAAAAAATAAAAAAGGGCGGGCCGTCAAG
TGGAATCAAGCATATTATCACGGGTAGCAAACTCTTCTCCTTTTAATGTG
CCTGAAATACATTTACAGGCGGTTTATAAAAAGTCAGAATGGAAAAACTG
TCACACCATCTTATCCGCCTTAAACATAACCCCTTTCACCAGGGTAAGAG
AAGGATAGACGCCCCCTATACTCTCCCTATTATGCAAACTTTTATGCGTA
GAAATCCTCTATAACGAACTATATGTGGACTTTTCAATATTAATAAATAT
AATATTAATTCTTAAGAAATCCATATTTTATTATATGTCATGTTTGTATA
TGTGATAAAAAAAAGTTAATATATGAAGTACATGACGCTGATTTGCTTAA
AGAAAAGAAAGATATCACATAAGTAAATATATAACTTGAACGTGTCAAAT
CGAATTCTGCTACGT
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