EY665182

Overview
NameEY665182
Unique NameEY665182
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1045
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665182 vs. ExPASy Swiss-Prot
Match: DDX31_DICDI (Probable ATP-dependent RNA helicase ddx31 OS=Dictyostelium discoideum GN=ddx31 PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 2.613e-13
Identity = 35/59 (59.32%), Postives = 44/59 (74.58%), Query Frame = 1
Query:  235 VDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKE 411
            V  F +HG+  QQ RT TFFDF  +  GILL TDV+ARGLD+P+V+WIVQYDP  + K+
Sbjct:  604 VPIFKLHGELDQQTRTKTFFDFKNSPNGILLTTDVSARGLDLPSVNWIVQYDPCSDTKD 662          
BLAST of EY665182 vs. ExPASy Swiss-Prot
Match: SPB4_NEOFI (ATP-dependent rRNA helicase spb4 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=spb4 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.412e-13
Identity = 53/130 (40.77%), Postives = 70/130 (53.85%), Query Frame = 1
Query:   49 VDDGRTKVTNEGLQQGYCVVPSAKRFILLYSFLKRNLSK------KVMVFFSSCNSVKFHSELLRYIQVDCF---DIHGKQKQQKRTTTFFDFCKA-EKGILLCTDVAARGLDIPAVDWIVQYDPPDEPK 408
            VDD RT  +   LQ  Y   P + +F    + LKR LS       K + F S+C+ V + S +L  +  D F    +HGK +   R   F  F  + +  ILL TDVAARGLDIP+VD +VQ DPP +PK
Sbjct:  259 VDDKRTPAS---LQMTYLTTPPSHKF----AALKRILSSVQPTPLKTIFFVSTCSGVDYLSAILPLLLGDDFLLIPLHGKHQANVRQKNFNRFINSHDPAILLTTDVAARGLDIPSVDLVVQIDPPSDPK 381          
BLAST of EY665182 vs. ExPASy Swiss-Prot
Match: SPB4_CHAGB (ATP-dependent rRNA helicase SPB4 OS=Chaetomium globosum GN=SPB4 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 4.456e-13
Identity = 48/118 (40.68%), Postives = 67/118 (56.78%), Query Frame = 1
Query:   73 TNEGLQQGYCVVPSAKRFILLYSFLKRNLSK--KVMVFFSSCNSVKFHSELLRYIQVDCFDI---HGKQKQQKRTTTFFDFCKAEKG-ILLCTDVAARGLDIPAVDWIVQYDPPDEPK 408
            T   LQ  Y V P++++   L   L+R   +  + +VFFS+C +VK+ + +L  I    F I   HGK + Q R   F  F  A    +LL TD+AARGLDIP VD +VQ+DPP + K
Sbjct:  265 TPMSLQMSYIVTPASQKIPALCQLLERLEPRPSRSIVFFSTCFAVKYFARVLHGILPPGFSIVSLHGKLEPQVREKNFERFVNAASPTVLLTTDIAARGLDIPQVDLVVQHDPPTDTK 382          
BLAST of EY665182 vs. ExPASy Swiss-Prot
Match: DDX47_MOUSE (Probable ATP-dependent RNA helicase DDX47 OS=Mus musculus GN=Ddx47 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 4.456e-13
Identity = 43/113 (38.05%), Postives = 59/113 (52.21%), Query Frame = 1
Query:   73 TNEGLQQGYCVVPSAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKE 411
            T E LQQ Y  +PS  +   L   L        M+F S+CN+ +  + LLR +      +HG+  Q KR  +   F    + ILL TDVA+RGLDIP VD +V +D P   K+
Sbjct:  234 TVEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKD 346          
BLAST of EY665182 vs. ExPASy Swiss-Prot
Match: DDX47_HUMAN (Probable ATP-dependent RNA helicase DDX47 OS=Homo sapiens GN=DDX47 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 4.456e-13
Identity = 43/113 (38.05%), Postives = 59/113 (52.21%), Query Frame = 1
Query:   73 TNEGLQQGYCVVPSAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKE 411
            T E LQQ Y  +PS  +   L   L        M+F S+CN+ +  + LLR +      +HG+  Q KR  +   F    + ILL TDVA+RGLDIP VD +V +D P   K+
Sbjct:  234 TVEKLQQYYIFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKD 346          
BLAST of EY665182 vs. ExPASy Swiss-Prot
Match: DDX47_BOVIN (Probable ATP-dependent RNA helicase DDX47 OS=Bos taurus GN=DDX47 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 4.456e-13
Identity = 43/113 (38.05%), Postives = 59/113 (52.21%), Query Frame = 1
Query:   73 TNEGLQQGYCVVPSAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKE 411
            T E LQQ Y  +PS  +   L   L        M+F S+CN+ +  + LLR +      +HG+  Q KR  +   F    + ILL TDVA+RGLDIP VD +V +D P   K+
Sbjct:  236 TVEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKD 348          
BLAST of EY665182 vs. ExPASy Swiss-Prot
Match: SPB4_ASPFU (ATP-dependent rRNA helicase spb4 OS=Aspergillus fumigatus GN=spb4 PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 7.602e-13
Identity = 52/130 (40.00%), Postives = 70/130 (53.85%), Query Frame = 1
Query:   49 VDDGRTKVTNEGLQQGYCVVPSAKRFILLYSFLKRNLSK------KVMVFFSSCNSVKFHSELLRYIQVDCF---DIHGKQKQQKRTTTFFDFCKA-EKGILLCTDVAARGLDIPAVDWIVQYDPPDEPK 408
            VDD RT  +   LQ  Y   P + +F    + LKR +S       K + F S+C+ V + S +L  +  D F    +HGK +   R   F  F  + +  ILL TDVAARGLDIP+VD +VQ DPP +PK
Sbjct:  259 VDDKRTPAS---LQMTYLTTPPSHKF----AALKRIVSSVQPTPLKTIFFVSTCSGVDYLSAILPLLLGDDFLLIPLHGKHQANVRQKNFNRFINSHDPAILLTTDVAARGLDIPSVDLVVQIDPPSDPK 381          
BLAST of EY665182 vs. ExPASy Swiss-Prot
Match: SPB4_ASPTN (ATP-dependent rRNA helicase spb4 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=spb4 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.297e-12
Identity = 47/120 (39.17%), Postives = 63/120 (52.50%), Query Frame = 1
Query:   67 KVTNEGLQQGYCVVPSAKRFILLYSFLK--RNLSKKVMVFFSSCNSVKFHSELLRYIQVDCFDI---HGKQKQQKRTTTFFDFCKAEK-GILLCTDVAARGLDIPAVDWIVQYDPPDEPK 408
            K T   LQ  Y   P A +F+ L   L   +   +K + F S+C+ V + + +L  +  D F +   HGK     R   F  F  A    ILL TDVA+RGLDIP+VD +VQ DPP +PK
Sbjct:  262 KRTPASLQMTYLTTPPAHKFLTLRPILTSLQPTPQKTIFFVSTCSGVDYLAAILPLLLGDDFQLIPLHGKHPANVRQKNFNRFINAHTPSILLTTDVASRGLDIPSVDLVVQIDPPSDPK 381          
BLAST of EY665182 vs. ExPASy Swiss-Prot
Match: SPB4_USTMA (ATP-dependent rRNA helicase SPB4 OS=Ustilago maydis GN=SPB4 PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.693e-12
Identity = 48/132 (36.36%), Postives = 70/132 (53.03%), Query Frame = 1
Query:  160 SKKVMVFFSSCNSVKF------HSELLRYIQVDCFDIHGKQKQQKRTTTFFDFCKAEK--------GILLCTDVAARGLDIPAVDWIVQYDPPDEPKE*YSSGGVGTAPWKKGAKGNAPLFLDSRKNLHFPS 513
            ++K++V+FS+C  V +         +LR  +V  + +HGKQ   KR + F  F  +           +L CTDVAARGLD+P VD +VQYDPP +PK  +S     TA  + G  G A + L + +   F S
Sbjct:  348 ARKLIVYFSTCAQVNYFYSVFSQVSILRQHRVKLYALHGKQTPSKRKSMFDTFVASTALDSGASGASVLFCTDVAARGLDLPDVDVVVQYDPPTDPKV-FSHRCGRTA--RAGRNGRAIVMLHTGREQDFVS 476          
BLAST of EY665182 vs. ExPASy Swiss-Prot
Match: SPB4_ASPCL (ATP-dependent rRNA helicase spb4 OS=Aspergillus clavatus GN=spb4 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.693e-12
Identity = 49/126 (38.89%), Postives = 67/126 (53.17%), Query Frame = 1
Query:   49 VDDGRTKVTNEGLQQGYCVVPSAKRFILLYSFLK--RNLSKKVMVFFSSCNSVKFHSELLRYIQVDCF---DIHGKQKQQKRTTTFFDFCKAEK-GILLCTDVAARGLDIPAVDWIVQYDPPDEPK 408
            VDD RT  +   LQ  Y   P   +F  L + L   +   +K + F S+C+ V + S +L  +  D F    +HGK +   R   F  F  +    ILL TDVA+RGLDIP+VD +VQ DPP +PK
Sbjct:  259 VDDKRTPAS---LQMTYLSTPPLHKFAALKNILSSVQPTPQKSIFFVSTCSGVDYLSAILPLLLGDDFLLIPLHGKHQANVRQKNFNRFLSSHSPAILLTTDVASRGLDIPSVDLVVQIDPPSDPK 381          
The following BLAST results are available for this feature:
BLAST of EY665182 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
DDX31_DICDI2.613e-1359.32Probable ATP-dependent RNA helicase ddx31 OS=Dicty... [more]
SPB4_NEOFI3.412e-1340.77ATP-dependent rRNA helicase spb4 OS=Neosartorya fi... [more]
SPB4_CHAGB4.456e-1340.68ATP-dependent rRNA helicase SPB4 OS=Chaetomium glo... [more]
DDX47_MOUSE4.456e-1338.05Probable ATP-dependent RNA helicase DDX47 OS=Mus m... [more]
DDX47_HUMAN4.456e-1338.05Probable ATP-dependent RNA helicase DDX47 OS=Homo ... [more]
DDX47_BOVIN4.456e-1338.05Probable ATP-dependent RNA helicase DDX47 OS=Bos t... [more]
SPB4_ASPFU7.602e-1340.00ATP-dependent rRNA helicase spb4 OS=Aspergillus fu... [more]
SPB4_ASPTN1.297e-1239.17ATP-dependent rRNA helicase spb4 OS=Aspergillus te... [more]
SPB4_USTMA1.693e-1236.36ATP-dependent rRNA helicase SPB4 OS=Ustilago maydi... [more]
SPB4_ASPCL1.693e-1238.89ATP-dependent rRNA helicase spb4 OS=Aspergillus cl... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-083-A02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665182 ID=EY665182; Name=EY665182; organism=Citrus sinensis; type=EST; length=1045bp
GAGGATCTTGCTCGCTTGTCATTTCAGACAACTCCAGTTTATATTGATGT
GGATGATGGGAGAACTAAGGTCACCAACGAAGGCCTGCAGCAAGGCTATT
GTGTGGTGCCCAGTGCCAAGAGATTTATCCTTCTATATTCCTTCTTGAAG
AGGAATCTGTCAAAGAAAGTGATGGTCTTCTTCTCCTCGTGTAATTCAGT
CAAATTTCATTCAGAACTTCTCAGATATATTCAGGTGGATTGCTTTGATA
TCCATGGAAAGCAAAAGCAACAGAAACGAACCACTACCTTCTTTGACTTC
TGCAAGGCGGAGAAGGGCATCTTGTTGTGTACTGATGTAGCTGCCCGTGG
ACTTGACATTCCTGCTGTGGACTGGATTGTGCAGTATGATCCTCCTGATG
AACCCAAGGAATAATATTCTTCGGGTGGGGTCGGGACAGCCCCGTGGAAG
AAAGGTGCAAAAGGAAATGCCCCACTTTTTCTTGATTCCAGAAAGAATTT
ACATTTTCCTTCCATATTCTGAAGGGCTGGCAAAAATCCCCTGGTTAAAA
AAATTATGAATTTTGAACCAAAAAAAACTGGGTCTAAGGTGCAGTCCCCT
TCCGGGGAAAAAATTGGGTTGGCTAACACCTATTTAATTTTGAAACCAAC
CCCCCCTAAAAATGGCGTTACGCATTTTTTATTTCCATACCAATAGATTT
CCCCACCCCCTAAGAAAGAATAAATCTTCCAAGGTATACCCCCCCCTATT
GATTTGGAAGGGGGAACCCGCCCTCGTTTTTATTTATTGTTTTTTTTTCT
CCCCCCCCCCCTAGAGGGGGAAAAATCCAAACACATAGAAAACCACGCTG
GTCCCCTCTTATAATTTTTTAAAAAAATAAAAAACCACCCCAAAAAAACT
CACACAAAAGAGAACACAAAAACAAATTGGTTTTTTTCTCATTGAAAACA
CTCCACCCCCCTTTTTATTGGAGTGGTAGGAAACAGAAGAAAGAATAATA
AAAAATAAAAATAAAAATACACACCCCCCCCACTTTTGTTTTTAT
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