EY665168

Overview
NameEY665168
Unique NameEY665168
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length425
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7410 contig Csv1_Contig7410:1575..1997. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY665168 vs. ExPASy Swiss-Prot
Match: AL2C4_ARATH (Aldehyde dehydrogenase family 2 member C4 OS=Arabidopsis thaliana GN=ALDH2C4 PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 1.694e-18
Identity = 38/79 (48.10%), Postives = 57/79 (72.15%), Query Frame = 2
Query:   65 TRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAVVQPVKNPAWL 301
            T++GLAAG+ ++  D  NT+ R+++AG +W+NCY  FD   P+GGYK+SG  RE G+ +L+ YLQ K+VV P+ N  W+
Sbjct:  423 TKYGLAAGILSQDIDLINTVSRSIKAGIIWVNCYFGFDLDCPYGGYKMSGNCRESGMDALDNYLQTKSVVMPLHNSPWM 501          
BLAST of EY665168 vs. ExPASy Swiss-Prot
Match: ALDH4_BACSU (Putative aldehyde dehydrogenase dhaS OS=Bacillus subtilis GN=dhaS PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.212e-18
Identity = 41/78 (52.56%), Postives = 58/78 (74.36%), Query Frame = 2
Query:   38 DPASEKTYKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 271
            D   E+   + +GLAAG++T++   A+ +   L+AGTVW+NCY+VFDAA PFGGYK SG+GRE G Y+L+ Y +VK+V
Sbjct:  412 DEVIERANHSEYGLAAGLWTENVKQAHYIADRLQAGTVWVNCYNVFDAASPFGGYKQSGLGREMGSYALDNYTEVKSV 489          
BLAST of EY665168 vs. ExPASy Swiss-Prot
Match: AL1A1_RABIT (Retinal dehydrogenase 1 OS=Oryctolagus cuniculus GN=ALDH1A1 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.889e-18
Identity = 41/78 (52.56%), Postives = 53/78 (67.95%), Query Frame = 2
Query:   38 DPASEKTYKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 271
            D   ++   T +GL+AG+FTK  D A T+  AL+AGTVW+NCY V  A +PFGG+K+SG GRE G Y L  Y +VK V
Sbjct:  410 DDVIKRANNTTYGLSAGIFTKDLDKAVTVSSALQAGTVWVNCYSVVSAQVPFGGFKMSGNGRELGEYGLQQYTEVKTV 487          
BLAST of EY665168 vs. ExPASy Swiss-Prot
Match: AL1A1_CHICK (Retinal dehydrogenase 1 OS=Gallus gallus GN=ALDH1A1 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.405e-18
Identity = 42/78 (53.85%), Postives = 50/78 (64.10%), Query Frame = 2
Query:   38 DPASEKTYKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 271
            D   ++   T +GLAA VFTK  D A T   AL+AGTVW+NCY  F A  PFGG+K+SG GRE G Y L  Y +VK V
Sbjct:  423 DEVIKRANNTTYGLAAAVFTKDIDKALTFASALQAGTVWVNCYSAFSAQCPFGGFKMSGNGRELGEYGLQEYTEVKTV 500          
BLAST of EY665168 vs. ExPASy Swiss-Prot
Match: AL1A1_HUMAN (Retinal dehydrogenase 1 OS=Homo sapiens GN=ALDH1A1 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 3.194e-17
Identity = 41/78 (52.56%), Postives = 52/78 (66.67%), Query Frame = 2
Query:   38 DPASEKTYKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 271
            D   ++   T +GL+AGVFTK  D A T+  AL+AGTVW+NCY V  A  PFGG+K+SG GRE G Y  + Y +VK V
Sbjct:  415 DDVIKRANNTFYGLSAGVFTKDIDKAITISSALQAGTVWVNCYGVVSAQCPFGGFKMSGNGRELGEYGFHEYTEVKTV 492          
BLAST of EY665168 vs. ExPASy Swiss-Prot
Match: ALDH2_MACPR (Aldehyde dehydrogenase, cytosolic 2 (Fragment) OS=Macroscelides proboscideus PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.115e-17
Identity = 41/82 (50.00%), Postives = 52/82 (63.41%), Query Frame = 2
Query:   38 DPASEKTYKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAVVQPV 283
            D   ++   T +GLAAGVFTK  D A T+  AL+AGTVW+NCY       PFGG+K+SG GRE G Y L+ Y +VK V   +
Sbjct:  154 DEVIKRANNTFYGLAAGVFTKDLDKAVTVSAALQAGTVWVNCYMANSVQCPFGGFKMSGNGRELGEYGLHEYTEVKTVTMKI 235          
BLAST of EY665168 vs. ExPASy Swiss-Prot
Match: ALDH_ENCBU (Aldehyde dehydrogenase OS=Enchytraeus buchholzi GN=ALDH PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.293e-17
Identity = 42/78 (53.85%), Postives = 52/78 (66.67%), Query Frame = 2
Query:   38 DPASEKTYKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 271
            D   E+   T +GLAA VFTK+ DTA  +  +L AGTVW+N Y+ F    PFGGYK+SG GRE G Y L A+L+VK V
Sbjct:  412 DEVIERANDTSYGLAAAVFTKNIDTALKVANSLEAGTVWVNTYNHFAFQAPFGGYKMSGQGREFGHYGLEAFLEVKTV 489          
BLAST of EY665168 vs. ExPASy Swiss-Prot
Match: AL1A1_MACFA (Retinal dehydrogenase 1 OS=Macaca fascicularis GN=ALDH1A1 PE=2 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 1.585e-16
Identity = 40/78 (51.28%), Postives = 51/78 (65.38%), Query Frame = 2
Query:   38 DPASEKTYKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 271
            D   ++   T +GL+AGVFT   D A T+  AL+AGTVW+NCY V  A  PFGG+K+SG GRE G Y  + Y +VK V
Sbjct:  415 DDVIKRANNTFYGLSAGVFTNDIDKAVTISSALQAGTVWVNCYGVVTAQCPFGGFKMSGNGRELGEYGFHEYTEVKTV 492          
BLAST of EY665168 vs. ExPASy Swiss-Prot
Match: AL1A1_HORSE (Retinal dehydrogenase 1 OS=Equus caballus GN=ALDH1A1 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.585e-16
Identity = 40/78 (51.28%), Postives = 50/78 (64.10%), Query Frame = 2
Query:   38 DPASEKTYKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 271
            D   ++   T +GL AG FTK  D A T+  AL+AGTVW+NCY V  A  PFGG+K+SG GRE G Y  + Y +VK V
Sbjct:  414 DDVIKRANNTTYGLFAGSFTKDLDKAITVSAALQAGTVWVNCYGVVSAQCPFGGFKMSGNGREMGEYGFHEYTEVKTV 491          
BLAST of EY665168 vs. ExPASy Swiss-Prot
Match: AL1A1_RAT (Retinal dehydrogenase 1 OS=Rattus norvegicus GN=Aldh1a1 PE=1 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 2.070e-16
Identity = 39/82 (47.56%), Postives = 52/82 (63.41%), Query Frame = 2
Query:   38 DPASEKTYKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAVVQPV 283
            D   ++   T +GLAAGVFTK  D A T+  AL+AG VW+NCY +  A  PFGG+K+SG GRE G + L  Y ++K V   +
Sbjct:  415 DDVIKRANNTTYGLAAGVFTKDLDRAITVSSALQAGVVWVNCYMILSAQCPFGGFKMSGNGRELGEHGLYEYTELKTVAMKI 496          
The following BLAST results are available for this feature:
BLAST of EY665168 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 203
Match NameE-valueIdentityDescription
AL2C4_ARATH1.694e-1848.10Aldehyde dehydrogenase family 2 member C4 OS=Arabi... [more]
ALDH4_BACSU2.212e-1852.56Putative aldehyde dehydrogenase dhaS OS=Bacillus s... [more]
AL1A1_RABIT2.889e-1852.56Retinal dehydrogenase 1 OS=Oryctolagus cuniculus G... [more]
AL1A1_CHICK8.405e-1853.85Retinal dehydrogenase 1 OS=Gallus gallus GN=ALDH1A... [more]
AL1A1_HUMAN3.194e-1752.56Retinal dehydrogenase 1 OS=Homo sapiens GN=ALDH1A1... [more]
ALDH2_MACPR7.115e-1750.00Aldehyde dehydrogenase, cytosolic 2 (Fragment) OS=... [more]
ALDH_ENCBU9.293e-1753.85Aldehyde dehydrogenase OS=Enchytraeus buchholzi GN... [more]
AL1A1_MACFA1.585e-1651.28Retinal dehydrogenase 1 OS=Macaca fascicularis GN=... [more]
AL1A1_HORSE1.585e-1651.28Retinal dehydrogenase 1 OS=Equus caballus GN=ALDH1... [more]
AL1A1_RAT2.070e-1647.56Retinal dehydrogenase 1 OS=Rattus norvegicus GN=Al... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-074-G11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665168 ID=EY665168; Name=EY665168; organism=Citrus sinensis; type=EST; length=425bp
GGTNCGCCTGCCAGTATCGGTCCGGNATTCCCGGGCCGACCCAGCGTCCG
AGAAGACATATAAAACACGCTTTGGTCTAGCTGCTGGGGTTTTCACCAAG
AGTGCAGACACTGCAAACACCATGATGCGTGCACTGAGAGCTGGGACTGT
ATGGATTAACTGCTACGACGTGTTTGATGCTGCTATTCCTTTCGGTGGGT
ACAAGCTGAGTGGCATAGGCCGGGAAAAGGGAATTTACAGCCTTAACGCT
TACTTGCAAGTAAAGGCCGTCGTTCAACCTGTGAAGAACCCAGCATGGCT
TTAGTTTCCTGAAGTTCCCCCTCCCTTTTAATCTGTGTTTATGAATAAGG
ACAGCGTGCTAATATCAGCTTGTAATTATGGAGCAAATGGATAATTTACT
TTAAAAGAAAAAAAAAAAAAAAAAA
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