EY665168

Overview
NameEY665168
Unique NameEY665168
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length425
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7410 contig Csv1_Contig7410:1575..1997. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY665168 vs. ExPASy Swiss-Prot
Match: ALDH_ASPNG (Aldehyde dehydrogenase OS=Aspergillus niger GN=aldA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.704e-16
Identity = 39/69 (56.52%), Postives = 49/69 (71.01%), Query Frame = 2
Query:   65 TRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 271
            T +GLAAG+ TK   TA  +  ALRAGTVW+N Y++    +PFGG+K SGIGRE G Y+L  Y Q+KAV
Sbjct:  420 TSYGLAAGIHTKDVTTAIRVSNALRAGTVWVNSYNLIQYQVPFGGFKESGIGRELGSYALENYTQIKAV 488          
BLAST of EY665168 vs. ExPASy Swiss-Prot
Match: AL1A1_SHEEP (Retinal dehydrogenase 1 OS=Ovis aries GN=ALDH1A1 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 2.704e-16
Identity = 38/78 (48.72%), Postives = 51/78 (65.38%), Query Frame = 2
Query:   38 DPASEKTYKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 271
            D   ++   T +GL+AG+FT   D A T+  AL++GTVW+NCY V  A  PFGG+K+SG GRE G Y  + Y +VK V
Sbjct:  415 DDVIKRANNTFYGLSAGIFTNDIDKAITVSSALQSGTVWVNCYSVVSAQCPFGGFKMSGNGRELGEYGFHEYTEVKTV 492          
BLAST of EY665168 vs. ExPASy Swiss-Prot
Match: AL1A1_BOVIN (Retinal dehydrogenase 1 OS=Bos taurus GN=ALDH1A1 PE=2 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 2.704e-16
Identity = 38/78 (48.72%), Postives = 51/78 (65.38%), Query Frame = 2
Query:   38 DPASEKTYKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 271
            D   ++   T +GL+AG+FT   D A T+  AL++GTVW+NCY V  A  PFGG+K+SG GRE G Y  + Y +VK V
Sbjct:  415 DDVIKRANNTFYGLSAGIFTNDIDKAITVSSALQSGTVWVNCYSVVSAQCPFGGFKMSGNGRELGEYGFHEYTEVKTV 492          
BLAST of EY665168 vs. ExPASy Swiss-Prot
Match: AL1A3_MOUSE (Aldehyde dehydrogenase family 1 member A3 OS=Mus musculus GN=Aldh1a3 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.612e-16
Identity = 42/83 (50.60%), Postives = 54/83 (65.06%), Query Frame = 2
Query:   50 EKTYKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAVVQPV--KNP 292
            ++   T +GL A VFTK+ D A  +  AL +GTVWINCY+ F A  PFGG+K+SG GRE G Y+L  Y +VK V   +  KNP
Sbjct:  430 KRANSTDYGLTAAVFTKNLDKALKLAAALESGTVWINCYNAFYAQAPFGGFKMSGNGRELGEYALAEYTEVKTVTIKLEEKNP 512          
BLAST of EY665168 vs. ExPASy Swiss-Prot
Match: AL1A3_RAT (Aldehyde dehydrogenase family 1 member A3 OS=Rattus norvegicus GN=Aldh1a3 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 6.023e-16
Identity = 41/83 (49.40%), Postives = 54/83 (65.06%), Query Frame = 2
Query:   50 EKTYKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAVVQPV--KNP 292
            ++   T +GL A VFTK+ D A  +  AL +GTVW+NCY+ F A  PFGG+K+SG GRE G Y+L  Y +VK V   +  KNP
Sbjct:  430 KRANSTDYGLTAAVFTKNLDKALKLASALESGTVWVNCYNAFYAQAPFGGFKMSGNGRELGEYALAEYTEVKTVTIKLDEKNP 512          
BLAST of EY665168 vs. ExPASy Swiss-Prot
Match: AL1A1_MOUSE (Retinal dehydrogenase 1 OS=Mus musculus GN=Aldh1a1 PE=1 SV=5)

HSP 1 Score: 82.8037 bits (203), Expect = 6.023e-16
Identity = 38/88 (43.18%), Postives = 54/88 (61.36%), Query Frame = 2
Query:   20 VRXSRADPASEKTYKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAVVQPV 283
            ++    D   ++   T +GLAAG+FTK  D A T+  AL+AG VW+NCY +  A  PFGG+K+SG GRE G + L  Y ++K V   +
Sbjct:  409 MKFKSVDDVIKRANNTTYGLAAGLFTKDLDKAITVSSALQAGVVWVNCYMMLSAQCPFGGFKMSGNGRELGEHGLYEYTELKTVAMKI 496          
BLAST of EY665168 vs. ExPASy Swiss-Prot
Match: ALDH1_MACPR (Aldehyde dehydrogenase, cytosolic 1 OS=Macroscelides proboscideus GN=ALDH1 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.867e-16
Identity = 39/82 (47.56%), Postives = 51/82 (62.20%), Query Frame = 2
Query:   38 DPASEKTYKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAVVQPV 283
            D   ++   T +GL AGVFTK  D A T+  AL+AGTVW+NCY    A  P GG+K+SG GRE G Y ++ Y +VK V   +
Sbjct:  415 DEVIKRANNTYYGLVAGVFTKDLDKAVTVSSALQAGTVWVNCYLAASAQSPAGGFKMSGHGREMGEYGIHEYTEVKTVTMKI 496          
BLAST of EY665168 vs. ExPASy Swiss-Prot
Match: ALDH1_ELEED (Aldehyde dehydrogenase, cytosolic 1 OS=Elephantulus edwardii GN=ALDH1 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.867e-16
Identity = 39/82 (47.56%), Postives = 51/82 (62.20%), Query Frame = 2
Query:   38 DPASEKTYKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAVVQPV 283
            D   ++   T +GL AGVFTK  D A T+  AL+AGTVW+NCY    A  P GG+K+SG GRE G Y ++ Y +VK V   +
Sbjct:  415 DEVIKRANNTYYGLVAGVFTKDLDKAVTVSSALQAGTVWVNCYLAASAQSPAGGFKMSGHGREMGEYGIHEYTEVKTVTMKI 496          
BLAST of EY665168 vs. ExPASy Swiss-Prot
Match: AL1A2_HUMAN (Retinal dehydrogenase 2 OS=Homo sapiens GN=ALDH1A2 PE=1 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 7.867e-16
Identity = 42/92 (45.65%), Postives = 55/92 (59.78%), Query Frame = 2
Query:   20 VRXSRADPASEKTYKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAVVQ--PVKN 289
            +R    D   E+   + FGL A VFT   + A T+  A++AGTVWINCY+  +A  PFGG+K+SG GRE G + L  Y +VK V    P KN
Sbjct:  426 LRFKTMDEVIERANNSDFGLVAAVFTNDINKALTVSSAMQAGTVWINCYNALNAQSPFGGFKMSGNGREMGEFGLREYSEVKTVTVKIPQKN 517          
BLAST of EY665168 vs. ExPASy Swiss-Prot
Match: YF19_SCHPO (Putative aldehyde dehydrogenase-like protein C9E9.09c OS=Schizosaccharomyces pombe GN=SPAC9E9.09c PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.027e-15
Identity = 40/84 (47.62%), Postives = 51/84 (60.71%), Query Frame = 2
Query:   20 VRXSRADPASEKTYKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 271
            ++    + A  +   + +GLAAGV T +   A  +  AL AGTVW+NCY++    IPFGGYK SGIGRE G Y L  Y Q KAV
Sbjct:  410 IKFKTIEEAIRRGNNSTYGLAAGVHTNNITNAIKVSNALEAGTVWVNCYNLLHHQIPFGGYKESGIGRELGSYGLTNYTQTKAV 493          
The following BLAST results are available for this feature:
BLAST of EY665168 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 203
Match NameE-valueIdentityDescription
ALDH_ASPNG2.704e-1656.52Aldehyde dehydrogenase OS=Aspergillus niger GN=ald... [more]
AL1A1_SHEEP2.704e-1648.72Retinal dehydrogenase 1 OS=Ovis aries GN=ALDH1A1 P... [more]
AL1A1_BOVIN2.704e-1648.72Retinal dehydrogenase 1 OS=Bos taurus GN=ALDH1A1 P... [more]
AL1A3_MOUSE4.612e-1650.60Aldehyde dehydrogenase family 1 member A3 OS=Mus m... [more]
AL1A3_RAT6.023e-1649.40Aldehyde dehydrogenase family 1 member A3 OS=Rattu... [more]
AL1A1_MOUSE6.023e-1643.18Retinal dehydrogenase 1 OS=Mus musculus GN=Aldh1a1... [more]
ALDH1_MACPR7.867e-1647.56Aldehyde dehydrogenase, cytosolic 1 OS=Macroscelid... [more]
ALDH1_ELEED7.867e-1647.56Aldehyde dehydrogenase, cytosolic 1 OS=Elephantulu... [more]
AL1A2_HUMAN7.867e-1645.65Retinal dehydrogenase 2 OS=Homo sapiens GN=ALDH1A2... [more]
YF19_SCHPO1.027e-1547.62Putative aldehyde dehydrogenase-like protein C9E9.... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-074-G11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665168 ID=EY665168; Name=EY665168; organism=Citrus sinensis; type=EST; length=425bp
GGTNCGCCTGCCAGTATCGGTCCGGNATTCCCGGGCCGACCCAGCGTCCG
AGAAGACATATAAAACACGCTTTGGTCTAGCTGCTGGGGTTTTCACCAAG
AGTGCAGACACTGCAAACACCATGATGCGTGCACTGAGAGCTGGGACTGT
ATGGATTAACTGCTACGACGTGTTTGATGCTGCTATTCCTTTCGGTGGGT
ACAAGCTGAGTGGCATAGGCCGGGAAAAGGGAATTTACAGCCTTAACGCT
TACTTGCAAGTAAAGGCCGTCGTTCAACCTGTGAAGAACCCAGCATGGCT
TTAGTTTCCTGAAGTTCCCCCTCCCTTTTAATCTGTGTTTATGAATAAGG
ACAGCGTGCTAATATCAGCTTGTAATTATGGAGCAAATGGATAATTTACT
TTAAAAGAAAAAAAAAAAAAAAAAA
back to top