EY665168

Overview
NameEY665168
Unique NameEY665168
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length425
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7410 contig Csv1_Contig7410:1575..1997. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY665168 vs. ExPASy Swiss-Prot
Match: BETB_RHIL3 (Betaine aldehyde dehydrogenase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=betB PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.834e-11
Identity = 32/78 (41.03%), Postives = 45/78 (57.69%), Query Frame = 2
Query:   38 DPASEKTYKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 271
            D    +   + FGL+ GVFT     A+ ++  L AGT+WIN Y++    IPFGG K SG GRE  + +L  Y ++K V
Sbjct:  399 DEVIARANASEFGLSGGVFTADLTRAHRVVDRLEAGTLWINTYNLCPVEIPFGGSKQSGFGRENSLAALEHYSELKTV 476          
BLAST of EY665168 vs. ExPASy Swiss-Prot
Match: ALDA_STAAB (Putative aldehyde dehydrogenase aldA OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=aldA PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.619e-11
Identity = 32/75 (42.67%), Postives = 46/75 (61.33%), Query Frame = 2
Query:   65 TRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAVVQPVKN 289
            +++GLA GVF+++   A  + +A+R G +WIN Y+      PFGGYK SGIGRE    +L+ Y QVK +     N
Sbjct:  415 SKYGLAGGVFSQNITRALNIAKAVRTGRIWINTYNQVPEGAPFGGYKKSGIGRETYKGALSNYQQVKNIYIDTSN 489          
BLAST of EY665168 vs. ExPASy Swiss-Prot
Match: BADH2_ARATH (Betaine aldehyde dehydrogenase 2, mitochondrial OS=Arabidopsis thaliana GN=ALDH10A9 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.951e-11
Identity = 32/90 (35.56%), Postives = 47/90 (52.22%), Query Frame = 2
Query:   29 SRADPASEKTYKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAVVQPVKNPAW 298
            S  D A +    +++GLA  V +   +  + + +A +AG VW+NC        P+GG K SG GRE G + L  YL VK V Q + +  W
Sbjct:  405 STEDEAIQLANDSQYGLAGAVLSNDLERCDRVSKAFQAGIVWVNCSQPCFCQAPWGGTKRSGFGRELGEWGLENYLSVKQVTQYISDEPW 494          
The following BLAST results are available for this feature:
BLAST of EY665168 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 203
Match NameE-valueIdentityDescription
BETB_RHIL35.834e-1141.03Betaine aldehyde dehydrogenase OS=Rhizobium legumi... [more]
ALDA_STAAB7.619e-1142.67Putative aldehyde dehydrogenase aldA OS=Staphyloco... [more]
BADH2_ARATH9.951e-1135.56Betaine aldehyde dehydrogenase 2, mitochondrial OS... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-074-G11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665168 ID=EY665168; Name=EY665168; organism=Citrus sinensis; type=EST; length=425bp
GGTNCGCCTGCCAGTATCGGTCCGGNATTCCCGGGCCGACCCAGCGTCCG
AGAAGACATATAAAACACGCTTTGGTCTAGCTGCTGGGGTTTTCACCAAG
AGTGCAGACACTGCAAACACCATGATGCGTGCACTGAGAGCTGGGACTGT
ATGGATTAACTGCTACGACGTGTTTGATGCTGCTATTCCTTTCGGTGGGT
ACAAGCTGAGTGGCATAGGCCGGGAAAAGGGAATTTACAGCCTTAACGCT
TACTTGCAAGTAAAGGCCGTCGTTCAACCTGTGAAGAACCCAGCATGGCT
TTAGTTTCCTGAAGTTCCCCCTCCCTTTTAATCTGTGTTTATGAATAAGG
ACAGCGTGCTAATATCAGCTTGTAATTATGGAGCAAATGGATAATTTACT
TTAAAAGAAAAAAAAAAAAAAAAAA
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