EY665168

Overview
NameEY665168
Unique NameEY665168
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length425
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7410 contig Csv1_Contig7410:1575..1997. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY665168 vs. ExPASy Swiss-Prot
Match: AL9A1_ORYLA (Aldehyde dehydrogenase family 9 member A1 OS=Oryzias latipes GN=aldh9A1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.773e-13
Identity = 34/70 (48.57%), Postives = 47/70 (67.14%), Query Frame = 2
Query:   65 TRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAVV 274
            T FGLA+GVFT+    A+ +  +L AGT +IN Y++    +PFGGYK+SG GRE G  ++  Y Q+K VV
Sbjct:  426 TTFGLASGVFTRDISRAHRVAASLEAGTCFINNYNISPVEVPFGGYKMSGFGRENGQVTIEYYSQLKTVV 495          
BLAST of EY665168 vs. ExPASy Swiss-Prot
Match: AL9A1_HUMAN (4-trimethylaminobutyraldehyde dehydrogenase OS=Homo sapiens GN=ALDH9A1 PE=1 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 4.773e-13
Identity = 36/74 (48.65%), Postives = 48/74 (64.86%), Query Frame = 2
Query:   50 EKTYKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 271
            E+   T FGLAAGVFT+    A+ ++  L+AGT +IN Y+V    +PFGGYK SG GRE G  ++  Y Q+K V
Sbjct:  410 ERANDTTFGLAAGVFTRDIQRAHRVVAELQAGTCFINNYNVSPVELPFGGYKKSGFGRENGRVTIEYYSQLKTV 483          
BLAST of EY665168 vs. ExPASy Swiss-Prot
Match: FTHFD_RAT (10-formyltetrahydrofolate dehydrogenase OS=Rattus norvegicus GN=Aldh1l1 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 6.233e-13
Identity = 36/78 (46.15%), Postives = 50/78 (64.10%), Query Frame = 2
Query:   38 DPASEKTYKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 271
            D    +   T FGLA+GVFT+  + A  +   L+AGTV+IN Y+  D A PFGG+K SG G++ G  +LN YL++K V
Sbjct:  821 DAVLSRANATEFGLASGVFTRDINKALYVSDKLQAGTVFINTYNKTDVAAPFGGFKQSGFGKDLGEAALNEYLRIKTV 898          
BLAST of EY665168 vs. ExPASy Swiss-Prot
Match: FTHFD_PONAB (10-formyltetrahydrofolate dehydrogenase OS=Pongo abelii GN=ALDH1L1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.233e-13
Identity = 36/78 (46.15%), Postives = 50/78 (64.10%), Query Frame = 2
Query:   38 DPASEKTYKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 271
            D    +   T FGLA+GVFT+  + A  +   L+AGTV++N Y+  D A PFGG+K SG G++ G  +LN YL+VK V
Sbjct:  821 DTVLSRANATEFGLASGVFTRDINKALYVSDKLQAGTVFVNTYNKTDVAAPFGGFKQSGFGKDLGEAALNEYLRVKTV 898          
BLAST of EY665168 vs. ExPASy Swiss-Prot
Match: FTHFD_HUMAN (10-formyltetrahydrofolate dehydrogenase OS=Homo sapiens GN=ALDH1L1 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 6.233e-13
Identity = 36/78 (46.15%), Postives = 50/78 (64.10%), Query Frame = 2
Query:   38 DPASEKTYKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 271
            D    +   T FGLA+GVFT+  + A  +   L+AGTV++N Y+  D A PFGG+K SG G++ G  +LN YL+VK V
Sbjct:  821 DAVLSRANATEFGLASGVFTRDINKALYVSDKLQAGTVFVNTYNKTDVAAPFGGFKQSGFGKDLGEAALNEYLRVKTV 898          
BLAST of EY665168 vs. ExPASy Swiss-Prot
Match: BETB_CHRSD (Betaine aldehyde dehydrogenase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=betB PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.233e-13
Identity = 34/69 (49.28%), Postives = 48/69 (69.57%), Query Frame = 2
Query:   65 TRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 271
            T++GLAAGVF++S + A+ ++  L AG  WIN +    + +P GGYK SGIGRE G+ +LN Y Q K+V
Sbjct:  410 TKYGLAAGVFSESLNRAHRVIHQLEAGICWINTWGESPSEMPVGGYKESGIGRENGVETLNHYTQTKSV 478          
BLAST of EY665168 vs. ExPASy Swiss-Prot
Match: BETB_ACIAD (Betaine aldehyde dehydrogenase OS=Acinetobacter sp. (strain ADP1) GN=betB PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.233e-13
Identity = 35/78 (44.87%), Postives = 49/78 (62.82%), Query Frame = 2
Query:   38 DPASEKTYKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 271
            + A E+   T FGLAAGV T++   A+ ++  L AG  WIN +    A +P GGYK SG+GRE GI +LN Y + K++
Sbjct:  402 EEAIERANNTNFGLAAGVVTQNISQAHQIIHQLEAGICWINTWGESPAEMPVGGYKESGVGRENGISTLNHYTRTKSI 479          
BLAST of EY665168 vs. ExPASy Swiss-Prot
Match: BETB2_RHIME (Betaine aldehyde dehydrogenase 2 OS=Rhizobium meliloti GN=betB2 PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 6.233e-13
Identity = 35/69 (50.72%), Postives = 47/69 (68.12%), Query Frame = 2
Query:   65 TRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 271
            T FGLAAG+FT+    A+ +   L AGTVWIN Y++  A + FGG K SGIGRE G  +++ Y Q+K+V
Sbjct:  407 TDFGLAAGIFTRDLVRAHRLAAELEAGTVWINAYNLTPAGMAFGGIKRSGIGRENGRVAIDHYTQLKSV 475          
BLAST of EY665168 vs. ExPASy Swiss-Prot
Match: BADH_GADCA (Betaine aldehyde dehydrogenase OS=Gadus callarias GN=aldh9A1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.233e-13
Identity = 33/75 (44.00%), Postives = 48/75 (64.00%), Query Frame = 2
Query:   50 EKTYKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAVV 274
            ++   T FGLA+GVFT+    A+ +   L AGT +IN Y +    +PFGGYK+SG GRE G  +++ Y Q+K V+
Sbjct:  419 QRANNTTFGLASGVFTRDISRAHRVAANLEAGTCYINTYSISPVEVPFGGYKMSGFGRENGQATVDYYSQLKTVI 493          
BLAST of EY665168 vs. ExPASy Swiss-Prot
Match: AL9A1_RAT (4-trimethylaminobutyraldehyde dehydrogenase OS=Rattus norvegicus GN=Aldh9a1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.233e-13
Identity = 36/74 (48.65%), Postives = 47/74 (63.51%), Query Frame = 2
Query:   50 EKTYKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 271
            E+   T FGLAAGVFT+    A+ +   L+AGT +IN Y+V    +PFGGYK SG GRE G  ++  Y Q+K V
Sbjct:  410 ERANDTTFGLAAGVFTRDIQRAHRVAAELQAGTCYINNYNVSPVELPFGGYKKSGFGRENGRVTIEYYSQLKTV 483          
The following BLAST results are available for this feature:
BLAST of EY665168 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 203
Match NameE-valueIdentityDescription
AL9A1_ORYLA4.773e-1348.57Aldehyde dehydrogenase family 9 member A1 OS=Oryzi... [more]
AL9A1_HUMAN4.773e-1348.654-trimethylaminobutyraldehyde dehydrogenase OS=Hom... [more]
FTHFD_RAT6.233e-1346.1510-formyltetrahydrofolate dehydrogenase OS=Rattus ... [more]
FTHFD_PONAB6.233e-1346.1510-formyltetrahydrofolate dehydrogenase OS=Pongo a... [more]
FTHFD_HUMAN6.233e-1346.1510-formyltetrahydrofolate dehydrogenase OS=Homo sa... [more]
BETB_CHRSD6.233e-1349.28Betaine aldehyde dehydrogenase OS=Chromohalobacter... [more]
BETB_ACIAD6.233e-1344.87Betaine aldehyde dehydrogenase OS=Acinetobacter sp... [more]
BETB2_RHIME6.233e-1350.72Betaine aldehyde dehydrogenase 2 OS=Rhizobium meli... [more]
BADH_GADCA6.233e-1344.00Betaine aldehyde dehydrogenase OS=Gadus callarias ... [more]
AL9A1_RAT6.233e-1348.654-trimethylaminobutyraldehyde dehydrogenase OS=Rat... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-074-G11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665168 ID=EY665168; Name=EY665168; organism=Citrus sinensis; type=EST; length=425bp
GGTNCGCCTGCCAGTATCGGTCCGGNATTCCCGGGCCGACCCAGCGTCCG
AGAAGACATATAAAACACGCTTTGGTCTAGCTGCTGGGGTTTTCACCAAG
AGTGCAGACACTGCAAACACCATGATGCGTGCACTGAGAGCTGGGACTGT
ATGGATTAACTGCTACGACGTGTTTGATGCTGCTATTCCTTTCGGTGGGT
ACAAGCTGAGTGGCATAGGCCGGGAAAAGGGAATTTACAGCCTTAACGCT
TACTTGCAAGTAAAGGCCGTCGTTCAACCTGTGAAGAACCCAGCATGGCT
TTAGTTTCCTGAAGTTCCCCCTCCCTTTTAATCTGTGTTTATGAATAAGG
ACAGCGTGCTAATATCAGCTTGTAATTATGGAGCAAATGGATAATTTACT
TTAAAAGAAAAAAAAAAAAAAAAAA
back to top