EY665155

Overview
NameEY665155
Unique NameEY665155
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length873
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665155 vs. ExPASy Swiss-Prot
Match: RL6_HALSA (50S ribosomal protein L6P OS=Halobacterium salinarium GN=rpl6p PE=1 SV=3)

HSP 1 Score: 101.293 bits (251), Expect = 7.557e-21
Identity = 59/178 (33.15%), Postives = 97/178 (54.49%), Query Frame = 3
Query:   27 MEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 560
            +EIP+ V  +++   + VEGP G ++R   + ++D  +  D       + + +     KT + + T  SHV N+  GV++G+ YK+   Y+HFP+   +    + + I+NFLGEK  RR ++     V+  D   +E+ L G  IE V ++AA I Q   V +KD R F DG+Y+ EK
Sbjct:    6 IEIPDDVTAEVDHLDLTVEGPEGSVTRRLWYPDVDVSVEDDA------VVVASEVDDAKTDSTVGTFESHVANMFHGVSEGWEYKLEVHYSHFPMQVDVEG--EEVVIQNFLGEKAARRTQIRGDTDVVVDD---EEVTLSGPSIEDVGQTAADIEQLTRVTDKDTRVFQDGVYIVEK 172          
BLAST of EY665155 vs. ExPASy Swiss-Prot
Match: RL6_METST (50S ribosomal protein L6P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.870e-21
Identity = 62/176 (35.23%), Postives = 95/176 (53.98%), Query Frame = 3
Query:   33 IPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 560
            IPE V V IN   + V+G  G++ RNF H  +           +  + +   F ++K  A + T  SH+ N+I GV  G+ YKM+ VYAHFP+   +    K + I NFLGE+  R+ +++ G  V  S K +D + + G + E V ++ A I Q   +K +D R F DGIY+ +K
Sbjct:   13 IPEDVTVTINGSEVTVKGNGGEIKRNFNHNKITI------SNDEENVTVKVAFPNKKDKAMVGTIRSHISNMIYGVDHGFTYKMKIVYAHFPMTVKVQG--KIVTIDNFLGERSPRKAKII-GDDVKVSVKGED-VTITGINKEHVGQTMANIEQATKIKGRDPRIFQDGIYLVDK 178          
BLAST of EY665155 vs. ExPASy Swiss-Prot
Match: RL6_META3 (50S ribosomal protein L6P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.289e-20
Identity = 62/179 (34.64%), Postives = 103/179 (57.54%), Query Frame = 3
Query:   27 MEIPEGVKVK-INAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 560
            +EIPE V ++ IN + + V+    +L R   + ++        +    K+ +++ +  +K +A I T  SH++N+ITGV++G+ YKM+  YAHFP+  S+      + I NFLGEK  R+  +++GV V  S    +++I+ G D E   ++AA I Q   V+ +D R F DGIY+ EK
Sbjct:   11 IEIPESVTIEVINNEEVVVKAGGKELRRILSYPDVVI------KKEDNKVVVESLYPRKKQAAIIGTFASHIKNIITGVSEGFEYKMKIRYAHFPMKISVKG--NEVIIDNFLGEKHPRKATIMEGVKVKVSG---EDVIVTGIDKEKTGQTAANIEQATRVRGRDTRVFQDGIYIVEK 178          
BLAST of EY665155 vs. ExPASy Swiss-Prot
Match: RL6_METBU (50S ribosomal protein L6P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.684e-20
Identity = 61/178 (34.27%), Postives = 93/178 (52.25%), Query Frame = 3
Query:   27 MEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 560
            + IPEGV V     ++   GP+G  +R   +  ++       E    ++ +D+    +K  A + T  SH+ N++ GV  G+ Y M+ VY+HFP+   +    K   I NFLGEKK R   +L   +V  S    DE+I+ G + E V ++AA I QK  +K  D R F DGIY+ +K
Sbjct:    9 ISIPEGVTVTFEKNVLSASGPKGTNTRFLWYPGVNI------EVNGSEIIVDSASSRKKQKAMVGTYTSHITNMMKGVVDGFEYHMKVVYSHFPMQIKVNG--KKFVINNFLGEKKPRVSNILGETSVKASG---DEVIVSGINKEDVGQTAANIEQKTKIKRFDPRVFQDGIYIVDK 175          
BLAST of EY665155 vs. ExPASy Swiss-Prot
Match: RL6_NATPD (50S ribosomal protein L6P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.091e-19
Identity = 62/177 (35.03%), Postives = 95/177 (53.67%), Query Frame = 3
Query:   27 MEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSE 557
            +EIP+ V   ++   + VEGP G ++R   + ++      D E G   ++ D    + KT + + T  SHV N+  GVT+G+ Y M   Y+HFP+  S+   D  I I NFLGEK  R+  +    +V   +   +EL + G  IE V ++AA I Q   V +KD R F DG+Y++E
Sbjct:    5 IEIPDEVTATMDHLEVTVEGPNGSVTRRLWYPDIT----VDVEDGAVVIETDD--DNAKTRSTVGTFESHVTNMFHGVTEGWEYSMEVFYSHFPMQVSVEGGD--IVIENFLGEKAPRKTPVRGDTSV---EVDGEELTVSGPSIEDVGQTAADIEQLTRVSDKDTRVFQDGVYITE 170          
BLAST of EY665155 vs. ExPASy Swiss-Prot
Match: RL6_ARCFU (50S ribosomal protein L6P OS=Archaeoglobus fulgidus GN=rpl6p PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.425e-19
Identity = 61/191 (31.94%), Postives = 99/191 (51.83%), Query Frame = 3
Query:    3 TRPLSSXTMEIPEGVKVKINAK-----IIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 560
            T       +E+PE V++ I         ++  GP+G+ +R  K+  +        E G  K+++      +K  A + T   H++NLITGV +G+ Y ++ VYAHFPI   +   +  IE  NF+GEK  RR +++    V  S +   ++ + G DIE   ++AA + Q   +K KD R F DGIY+ +K
Sbjct:   16 TEVYEERVVEVPEDVQLTIEGDSFRGYTLKAVGPKGENTRYLKYRGVFI------EVGDGKVRVYTTSPKKKHKAMVGTFAGHIENLITGVKEGFEYHLKVVYAHFPIKVRVEGNEVIIE--NFIGEKHPRRAKIVGRAQVEISGQ---DIYVRGIDIEECGQTAANLEQATKIKRKDPRVFQDGIYIVKK 195          
BLAST of EY665155 vs. ExPASy Swiss-Prot
Match: RL6_NANEQ (50S ribosomal protein L6P OS=Nanoarchaeum equitans GN=rpl6p PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.175e-19
Identity = 56/189 (29.63%), Postives = 98/189 (51.85%), Query Frame = 3
Query:    9 PLSSXTMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKK--VRRVEMLDGVTV-LRSDKVKDELILDGNDIELVSRSAALINQKCHV--KNKDIRKFLDGIYVSEK 560
            P+    + IPE VKV     I++V GP+G++ R F      +H +        K+ ++ +F +R+    I T  SH++N++ GV   + Y+++  Y HFP+   +      + + NFLGEK   ++ +  LD V V +  +K + E++++  D E     A++I Q      K KD R+F DGI++  K
Sbjct:    4 PIIKYEIPIPENVKVSYENNILKVSGPKGEVERKF------YHPLIKLSVNDNKIILETYFATRREKRLINTWRSHIKNMLEGVQNPFVYRLKVCYTHFPMRVKLEG--NKLIVENFLGEKAPIIKELPYLDKVKVKIEQNKDETEIVVESPDKEKAGIVASMIEQSTRFLHKRKDRRRFTDGIWLYYK 184          
BLAST of EY665155 vs. ExPASy Swiss-Prot
Match: RL6_METBF (50S ribosomal protein L6P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.147e-19
Identity = 62/179 (34.64%), Postives = 98/179 (54.75%), Query Frame = 3
Query:   27 MEIPEGVKVKINAK-IIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 560
            +EIPEG+ V  +   +    GP G + R   +  +  ++  DGE     +++DA    ++  A + T  SH++NL+ GV +G+  KM  +YAHFP+   +    K++ I NFLGEKK R  ++L    V  S    +E+ + G + E V ++AA I QK  +K  D R F DGIY+ +K
Sbjct:    9 IEIPEGISVSFSQDDVFTATGPLGTVERKLWYPGIKIYVR-DGE-----VEVDAESSRKEQKAMVGTFTSHIKNLMKGVNEGFECKMTILYAHFPMQVKVDG--KTLIIGNFLGEKKPRIAKILGETKVKVSG---NEVTVSGINKEDVGQTAANIEQKTKIKRFDPRIFQDGIYIVQK 176          
BLAST of EY665155 vs. ExPASy Swiss-Prot
Match: RL6_METKA (50S ribosomal protein L6P OS=Methanopyrus kandleri GN=rpl6p PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.881e-17
Identity = 53/183 (28.96%), Postives = 105/183 (57.38%), Query Frame = 3
Query:   27 MEIPEGVKVKINAKI-----IEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 560
            ++I + V+++I+ +      + V+GP+G++++ F +   D +L  + +    ++ I A   +R+  A +    ++++N+  GVT+G+ YK++ VY+HFP    +   +  + I NF+GE   R  E++D        + +D +I+ G D E V ++AA + Q  ++K++D R F DGIY+ EK
Sbjct:   23 VKIKDDVEIEISQREDRRYEVTVKGPKGEVTKEFYYP--DVYLWVEDD----EVVIAATRSNRRQKAILGMIKAYIENMQKGVTEGHEYKLKLVYSHFPPEVKVDQKEGKVYIENFMGENVPRVAEIVDPENTEVIVQGQD-IIVRGIDKEAVGQTAANLEQATYIKDRDPRVFQDGIYIVEK 198          
BLAST of EY665155 vs. ExPASy Swiss-Prot
Match: RL6_THEAC (50S ribosomal protein L6P OS=Thermoplasma acidophilum GN=rpl6p PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.291e-16
Identity = 56/180 (31.11%), Postives = 92/180 (51.11%), Query Frame = 3
Query:   24 TMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKG 563
            +++IP+G KV I+   + +      +S+NF   N    L+ DG T    +KI+A   +      + T  S + N+I G+  G++Y+M+  Y+HFP+  S+    K++ I NF GE+  R  E++   TV       D + + G   + V  +AA I +   +K  D R F DGIY+  KG
Sbjct:    9 SIKIPDGFKVSISGTTVTISYGGKTISKNFA--NNYVKLVEDGST----IKINASKNNSMVRGIVGTWASEINNMIKGLKDGFQYEMKIDYSHFPMRVSVKG--KTVVIENFFGERSPRTAEIVGDTTVTVKG---DRVYIAGISKKDVGETAANIERSTIIKGFDPRVFQDGIYLISKG 177          
The following BLAST results are available for this feature:
BLAST of EY665155 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
RL6_HALSA7.557e-2133.1550S ribosomal protein L6P OS=Halobacterium salinar... [more]
RL6_METST9.870e-2135.2350S ribosomal protein L6P OS=Methanosphaera stadtm... [more]
RL6_META31.289e-2034.6450S ribosomal protein L6P OS=Methanococcus aeolicu... [more]
RL6_METBU1.684e-2034.2750S ribosomal protein L6P OS=Methanococcoides burt... [more]
RL6_NATPD1.091e-1935.0350S ribosomal protein L6P OS=Natronomonas pharaoni... [more]
RL6_ARCFU1.425e-1931.9450S ribosomal protein L6P OS=Archaeoglobus fulgidu... [more]
RL6_NANEQ3.175e-1929.6350S ribosomal protein L6P OS=Nanoarchaeum equitans... [more]
RL6_METBF4.147e-1934.6450S ribosomal protein L6P OS=Methanosarcina barker... [more]
RL6_METKA3.881e-1728.9650S ribosomal protein L6P OS=Methanopyrus kandleri... [more]
RL6_THEAC4.291e-1631.1150S ribosomal protein L6P OS=Thermoplasma acidophi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-074-F09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665155 ID=EY665155; Name=EY665155; organism=Citrus sinensis; type=EST; length=873bp
CCACGCGTCCGCTTTCTTCANAGACGATGGAGATCCCAGAGGGGGTGAAA
GTAAAGATAAATGCGAAGATAATAGAAGTAGAGGGACCTAGAGGTAAGCT
TAGCCGCAATTTCAAGCATTTGAACCTAGACTTCCATCTCATGACTGATG
GGGAAACTGGGAAGCGGAAGCTGAAGATCGACGCATGGTTTGGGTCTCGC
AAGACCAGTGCCGCCATCAGAACTGCCCTCAGCCATGTACAGAACCTCAT
CACTGGGGTTACCAAGGGCTACCGTTACAAGATGAGATTCGTCTACGCTC
ACTTTCCCATCAACGCCTCCATCGCCAACGCTGACAAGTCCATTGAGATC
CGTAACTTTCTAGGAGAAAAGAAGGTTCGAAGAGTGGAAATGCTTGACGG
TGTTACCGTTCTTCGGTCTGACAAGGTTAAGGATGAACTCATTCTTGATG
GGAATGACATTGAACTTGTGTCGCGGTCCGCTGCTTTGATCAATCAGAAA
TGCCATGTGAAGAACAAAGATATCAGGAAATTCTTAGACGGGATCTATGT
CAGTGAGAAGGGCACAATTGTTGGAGAGGATTAGTTAGCTTTCAAATTTT
ATGTCACATTATTATCATGAAATTGGTATTAATCTTGCTCTTTTTGCCCT
GTGTTGGGGAAGTCCTTTTTTTTTCGTTTGGAAATTTGGTATTAGAGAGT
TTTAGATTTCTGCTTCACTCCATGTACCTTTTGTCCATATGTATCAAATG
GATTTTATACCTATTTGCCTGCCAATGTTGATCCGTATCTACTTTGGTGG
AGTTGGCATGATTTCTTGATACTAGTAATCCAATTCGTATTACTTATTTT
ATTGCAAAAAAAAAAAAAAGGGC
back to top