EH406465

Overview
NameEH406465
Unique NameEH406465
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EH406465 vs. ExPASy Swiss-Prot
Match: H2A1H_HUMAN (Histone H2A type 1-H OS=Homo sapiens GN=HIST1H2AH PE=1 SV=3)

HSP 1 Score: 113.62 bits (283), Expect = 1.045e-24
Identity = 64/107 (59.81%), Postives = 78/107 (72.90%), Query Frame = 3 
Query:  183 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSSK 500
            +RSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I   L+ K ++
Sbjct:   17 TRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPV-YLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTE 122
[Close]
BLAST of EH406465 vs. ExPASy Swiss-Prot
Match: H2A1D_HUMAN (Histone H2A type 1-D OS=Homo sapiens GN=HIST1H2AD PE=1 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.045e-24
Identity = 64/107 (59.81%), Postives = 78/107 (72.90%), Query Frame = 3 
Query:  183 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSSK 500
            +RSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I   L+ K ++
Sbjct:   17 TRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPV-YLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTE 122
[Close]
BLAST of EH406465 vs. ExPASy Swiss-Prot
Match: H2A1C_RAT (Histone H2A type 1-C OS=Rattus norvegicus PE=1 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.045e-24
Identity = 64/107 (59.81%), Postives = 78/107 (72.90%), Query Frame = 3 
Query:  183 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSSK 500
            SRSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ + TIA GGV+P+I   L+ K ++
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPV-YLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTE 122
[Close]
BLAST of EH406465 vs. ExPASy Swiss-Prot
Match: H2A1C_HUMAN (Histone H2A type 1-C OS=Homo sapiens GN=HIST1H2AC PE=1 SV=3)

HSP 1 Score: 113.62 bits (283), Expect = 1.045e-24
Identity = 64/107 (59.81%), Postives = 78/107 (72.90%), Query Frame = 3 
Query:  183 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSSK 500
            SRSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ + TIA GGV+P+I   L+ K ++
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPV-YLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTE 122
[Close]
BLAST of EH406465 vs. ExPASy Swiss-Prot
Match: H2A_SEPOF (Histone H2A OS=Sepia officinalis PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.365e-24
Identity = 62/108 (57.41%), Postives = 78/108 (72.22%), Query Frame = 3 
Query:  183 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSKE 503
            +RSSRAGLQFPVGR+HRLL++              Y AA++EYL AEVLELAGNA++D K  RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I   L+ K +++
Sbjct:   16 TRSSRAGLQFPVGRIHRLLRKGNYAQRVGAGAPV-YLAAVMEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTQK 122
[Close]
BLAST of EH406465 vs. ExPASy Swiss-Prot
Match: H2A_ASPNG (Histone H2A OS=Aspergillus niger GN=httA PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.365e-24
Identity = 65/118 (55.08%), Postives = 81/118 (68.64%), Query Frame = 3 
Query:  183 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSSKE*FVTPSSSRL 533
            SRSS+AGL FPVGRVHRLL++              Y AA+LEYL AE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+   TIA GGV+P+IH++L+ K + +    P S  L
Sbjct:   18 SRSSKAGLAFPVGRVHRLLRKGNYAQRVGAGAPV-YLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTPKSGKGPGSQEL 134
[Close]
BLAST of EH406465 vs. ExPASy Swiss-Prot
Match: H2A_ASPNC (Histone H2A OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=httA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.365e-24
Identity = 65/118 (55.08%), Postives = 81/118 (68.64%), Query Frame = 3 
Query:  183 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSSKE*FVTPSSSRL 533
            SRSS+AGL FPVGRVHRLL++              Y AA+LEYL AE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+   TIA GGV+P+IH++L+ K + +    P S  L
Sbjct:   18 SRSSKAGLAFPVGRVHRLLRKGNYAQRVGAGAPV-YLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTPKSGKGPGSQEL 134
[Close]
BLAST of EH406465 vs. ExPASy Swiss-Prot
Match: H2A4_PSAMI (Late histone H2A.2.2 OS=Psammechinus miliaris PE=3 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.365e-24
Identity = 63/104 (60.58%), Postives = 75/104 (72.12%), Query Frame = 3 
Query:  183 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 491
            SRSSRAGLQFPVGRVHR L++              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLA+R DEEL+ L+ G TIA GGV+P+I   L+ K
Sbjct:   16 SRSSRAGLQFPVGRVHRFLRKGNYANRVGAGAPV-YLAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPK 118
[Close]
BLAST of EH406465 vs. ExPASy Swiss-Prot
Match: H2A3_VOLCA (Histone H2A-III OS=Volvox carteri PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.365e-24
Identity = 64/108 (59.26%), Postives = 76/108 (70.37%), Query Frame = 3 
Query:  180 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSK 500
            VSRS++AGLQFPVGR+ R LK+              Y AA+LEYLTAEVLELAGNA++D K  RI PRH+QLAIR DEEL  L+   TIA GGV+P+IH  L+ K SK
Sbjct:   15 VSRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPV-YLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGDVTIASGGVLPNIHAVLLPKKSK 121
[Close]
BLAST of EH406465 vs. ExPASy Swiss-Prot
Match: H2A_TIGCA (Histone H2A OS=Tigriopus californicus GN=His2A PE=3 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.782e-24
Identity = 62/108 (57.41%), Postives = 78/108 (72.22%), Query Frame = 3 
Query:  183 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSKE 503
            SRS+RAGLQFPVGR+HRLL++              Y AA++EYL AEVLELAGNA++D K  RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I   L+ K +++
Sbjct:   16 SRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPV-YLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEK 122
The following BLAST results are available for this feature:
BLAST of EH406465 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
H2A1H_HUMAN1.045e-2459.81Histone H2A type 1-H OS=Homo sapiens GN=HIST1H2AH ... [more]
H2A1D_HUMAN1.045e-2459.81Histone H2A type 1-D OS=Homo sapiens GN=HIST1H2AD ... [more]
H2A1C_RAT1.045e-2459.81Histone H2A type 1-C OS=Rattus norvegicus PE=1 SV=... [more]
H2A1C_HUMAN1.045e-2459.81Histone H2A type 1-C OS=Homo sapiens GN=HIST1H2AC ... [more]
H2A_SEPOF1.365e-2457.41Histone H2A OS=Sepia officinalis PE=1 SV=2[more]
H2A_ASPNG1.365e-2455.08Histone H2A OS=Aspergillus niger GN=httA PE=2 SV=1[more]
H2A_ASPNC1.365e-2455.08Histone H2A OS=Aspergillus niger (strain CBS 513.8... [more]
H2A4_PSAMI1.365e-2460.58Late histone H2A.2.2 OS=Psammechinus miliaris PE=3... [more]
H2A3_VOLCA1.365e-2459.26Histone H2A-III OS=Volvox carteri PE=3 SV=1[more]
H2A_TIGCA1.782e-2457.41Histone H2A OS=Tigriopus californicus GN=His2A PE=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK2BE07FM1 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406465 ID=EH406465; Name=EH406465; organism=Citrus sinensis; type=EST; length=709bp
TTCTTTCTTCTCCTTTAATTTTCATCTCAGAAAAAATTAAAAATAATTAA
ATAAATAATTAATTAATTTAAAAGAAGCTGTAGCAATTAGGCGGGAAAAT
GTCGGGCAAAGGAGCCAAAGGACTGATAACAGGCAAAACCACCATTAACA
ACAACAAGGATAAGGACAAGAAGAAACCCGTCTCCCGTTCTTCTCGTGCT
GGTCTTCAGTTCCCAGTGGGAAGGGTCCATCGTCTACTAAAGGAAAGGGC
TGCTGCTCACGGAAGGGTTGGCGCAACAGCTGCTGTTTATACAGCAGCCA
TTTTGGAATATCTAACTGCCGAAGTGTTGGAGTTGGCAGGGAATGCTAGC
AAGGATTTGAAGGTCAAACGTATTACTCCAAGGCATTTGCAGCTTGCTAT
CCGAGGAGATGAAGAACTTGACACTCTCATTAAAGGAACCATAGCCGGTG
GAGGAGTTATTCCTCATATCCACAAGTCCCTCATCAATAAATCCTCCAAA
GAGTAGTTCGTGACACCGTCATCCTCTCGGCTTTGTTTATGTGTGTACTT
TTAGCTGTGCTGAAATATCTAAATGAGAAATGATGCCAAAGATGTGTTAA
TGCTAGGAATCTGCATTCTTCAATCCTCATTTCATGCAGCGACGAATTAT
GGTGCTTGTTTTTTCCCATGTTGGTATTGAACTGTTACTGTTTAATTTTT
AAATAATTC
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