EY665140 | Citrus Genome Database

Overview


Name	EY665140
Unique Name	EY665140
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	913

Libraries


Library Name	Type
Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY665140 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.446e-26
Identity = 72/216 (33.33%), Postives = 101/216 (46.76%), Query Frame = 3

Query:   45 MATSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAXA-HIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVDGYRIAGWPLGEVTDPLYPCGSFYPLGLADEPXAFAELMVKEIR 686
            MA+S+   S S VG    LAPS     +G       T S  V+  + W           F G+P P++L G  PGD+G+D  GL+  PE F + +E E+ HCRWAML   G + PE L       G   W KA       +G   YLGNP  +   ++  I A + + +   +  R       +     YP G+F PLG + +P  F EL +KEI+
Sbjct:    1 MASSSGLRSCSAVGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAEW-----------FPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP--VPWGNLPTILAIEFLAIAFAEQQRTME---KDPEKKKYPGGAFDPLGFSKDPAKFEELKLKEIK 193

HSP 2 Score: 45.8246 bits (107), Expect = 1.446e-26
Identity = 24/40 (60.00%), Postives = 27/40 (67.50%), Query Frame = 2

Query:  683 QNGRLAMFLHVGFFVQ-AIVTGRGPLENLXRHLXDPVNNN 799
            +NGRLAM   VGF VQ +   G GPLENL  HL DP +NN
Sbjct:  193 KNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 232

[Close]

BLAST of EY665140 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 3.186e-25
Identity = 58/75 (77.33%), Postives = 63/75 (84.00%), Query Frame = 3

Query:  489 SLIHAQSILAIWACQVVLMGAVDGYRIAGWPLGEVTDPLYPCGSFYPLGLADEPXAFAELMVKEIRMEGWLCFSM 713
            SL+HAQSILAIWACQVVLMGAV+GYRIAG PLGEV DPLYP GSF PLGLA++P AFAEL VKEI+      FSM
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSM 226

HSP 2 Score: 74.3294 bits (181), Expect = 1.069e-12
Identity = 34/49 (69.39%), Postives = 37/49 (75.51%), Query Frame = 2

Query:  683 QNGRLAMFLHVGFFVQAIVTGRGPLENLXRHLXDPVNNNAWGLRTTLSP 829
            +NGRLAMF   GFFVQAIVTG+GPLENL  H+ DPVNNNAW   T   P
Sbjct:  217 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVP 265

[Close]

BLAST of EY665140 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 3.186e-25
Identity = 58/75 (77.33%), Postives = 63/75 (84.00%), Query Frame = 3

Query:  489 SLIHAQSILAIWACQVVLMGAVDGYRIAGWPLGEVTDPLYPCGSFYPLGLADEPXAFAELMVKEIRMEGWLCFSM 713
            SL+HAQSILAIWACQVVLMGAV+GYRIAG PLGEV DPLYP GSF PLGLA++P AFAEL VKEI+      FSM
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSM 226

HSP 2 Score: 74.3294 bits (181), Expect = 1.069e-12
Identity = 34/49 (69.39%), Postives = 37/49 (75.51%), Query Frame = 2

Query:  683 QNGRLAMFLHVGFFVQAIVTGRGPLENLXRHLXDPVNNNAWGLRTTLSP 829
            +NGRLAMF   GFFVQAIVTG+GPLENL  H+ DPVNNNAW   T   P
Sbjct:  217 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVP 265

[Close]

BLAST of EY665140 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 3.186e-25
Identity = 58/75 (77.33%), Postives = 63/75 (84.00%), Query Frame = 3

Query:  489 SLIHAQSILAIWACQVVLMGAVDGYRIAGWPLGEVTDPLYPCGSFYPLGLADEPXAFAELMVKEIRMEGWLCFSM 713
            SL+HAQSILAIWACQVVLMGAV+GYRIAG PLGEV DPLYP GSF PLGLA++P AFAEL VKEI+      FSM
Sbjct:    1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSM 75

HSP 2 Score: 74.7146 bits (182), Expect = 8.184e-13
Identity = 35/49 (71.43%), Postives = 37/49 (75.51%), Query Frame = 2

Query:  683 QNGRLAMFLHVGFFVQAIVTGRGPLENLXRHLXDPVNNNAWGLRTTLSP 829
            +NGRLAMF   GFFVQAIVTG+GPLENL  HL DPVNNNAW   T   P
Sbjct:   66 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVP 114

[Close]

BLAST of EY665140 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 3.186e-25
Identity = 58/75 (77.33%), Postives = 63/75 (84.00%), Query Frame = 3

Query:  489 SLIHAQSILAIWACQVVLMGAVDGYRIAGWPLGEVTDPLYPCGSFYPLGLADEPXAFAELMVKEIRMEGWLCFSM 713
            SL+HAQSILAIWACQVVLMGAV+GYRIAG PLGEV DPLYP GSF PLGLA++P AFAEL VKEI+      FSM
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSM 224

HSP 2 Score: 75.0998 bits (183), Expect = 6.267e-13
Identity = 35/49 (71.43%), Postives = 37/49 (75.51%), Query Frame = 2

Query:  683 QNGRLAMFLHVGFFVQAIVTGRGPLENLXRHLXDPVNNNAWGLRTTLSP 829
            +NGRLAMF   GFFVQAIVTG+GPLENL  HL DPVNNNAW   T   P
Sbjct:  215 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVP 263

[Close]

BLAST of EY665140 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 3.186e-25
Identity = 58/75 (77.33%), Postives = 63/75 (84.00%), Query Frame = 3

Query:  489 SLIHAQSILAIWACQVVLMGAVDGYRIAGWPLGEVTDPLYPCGSFYPLGLADEPXAFAELMVKEIRMEGWLCFSM 713
            SL+HAQSILAIWACQVVLMGAV+GYRIAG PLGEV DPLYP GSF PLGLA++P AFAEL VKEI+      FSM
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSM 224

HSP 2 Score: 75.0998 bits (183), Expect = 6.267e-13
Identity = 35/49 (71.43%), Postives = 37/49 (75.51%), Query Frame = 2

Query:  683 QNGRLAMFLHVGFFVQAIVTGRGPLENLXRHLXDPVNNNAWGLRTTLSP 829
            +NGRLAMF   GFFVQAIVTG+GPLENL  HL DPVNNNAW   T   P
Sbjct:  215 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVP 263

[Close]

BLAST of EY665140 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.780e-23
Identity = 58/155 (37.42%), Postives = 78/155 (50.32%), Query Frame = 3

Query:  228 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAXAHIFSEGG-LDYLGNPSLIHAQSILAIWACQVVLMGAVDGYRIAGWPLGEVTDPLYPCGSFYPLGLADEPXAFAELMVKEIR 686
            G+P PSYL G  PGD+G+D+ GL   P    + +E E+IHCRWAML   G + PE L       G   W KA       GG   YLG P  +   ++  I A + + +  V+  R       +     YP G+F PLG + +P  F EL VKEI+
Sbjct:   52 GQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL-------GLGNWVKAQEWAAIPGGQATYLGQP--VPWGTLPTILAIEFLAIAFVEHQRSME---KDSEKKKYPGGAFDPLGYSKDPAKFEELKVKEIK 194

HSP 2 Score: 43.8986 bits (102), Expect = 1.780e-23
Identity = 23/40 (57.50%), Postives = 27/40 (67.50%), Query Frame = 2

Query:  683 QNGRLAMFLHVGFFVQ-AIVTGRGPLENLXRHLXDPVNNN 799
            +NGRLA+   VGF VQ +   G GPLENL  HL DP +NN
Sbjct:  194 KNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNN 233

[Close]

BLAST of EY665140 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 5.087e-23
Identity = 57/83 (68.67%), Postives = 63/83 (75.90%), Query Frame = 3

Query:  468 LDYLGNPSLIHAQSILAIWACQVVLMGAVDGYRIAG-WPLGEVTDPLYPCGSFYPLGLADEPXAFAELMVKEIRMEGWLCFSM 713
            LDYLGNPSL+HAQSILAIWA QV+LMGAV+GYR+AG  PLGE  D LYP GSF PL    +P AFAEL VKEI+      FSM
Sbjct:    1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAELKVKEIKNGRLAMFSM 83

HSP 2 Score: 75.0998 bits (183), Expect = 6.267e-13
Identity = 35/49 (71.43%), Postives = 37/49 (75.51%), Query Frame = 2

Query:  683 QNGRLAMFLHVGFFVQAIVTGRGPLENLXRHLXDPVNNNAWGLRTTLSP 829
            +NGRLAMF   GFFVQAIVTG+GPLENL  HL DPVNNNAW   T   P
Sbjct:   74 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVP 122

[Close]

BLAST of EY665140 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.214e-22
Identity = 61/181 (33.70%), Postives = 88/181 (48.62%), Query Frame = 3

Query:  195 PDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAXAHIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVDGYRIAG--WPLGEVTDPLYPCGSF------YPLGL--------ADEPXAFAELMVKEIR 686
            PDR  +   F G  PP +L G  PGD+G+D  GL++DPE+   N++ E++HCRWAMLGA G   PELL + G+      W+ A       G  +Y  + +         ++  ++VL+G  +G R A    P    TDP++P          YP GL        +  P    EL  KEI+
Sbjct:   63 PDRPLW---FPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTA-------GEQEYFTDTT--------TLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIK 224

HSP 2 Score: 41.9726 bits (97), Expect = 3.214e-22
Identity = 19/35 (54.29%), Postives = 24/35 (68.57%), Query Frame = 2

Query:  683 QNGRLAMFLHVGFFVQAIVTGRGPLENLXRHLXDP 787
            +NGRLAM   +G + Q I TG GP++NL  HL DP
Sbjct:  224 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258

[Close]

BLAST of EY665140 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.440e-22
Identity = 64/194 (32.99%), Postives = 91/194 (46.91%), Query Frame = 3

Query:  156 GSKSVSSGSPWYGPDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAXAHIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVDGYRIAG--WPLGEVTDPLYPCGSF------YPLGL--------ADEPXAFAELMVKEIR 686
            GS+SV+  +    PDR  +   F G  PP +L G  PGD+G+D  GL +DPE+   N + E++H RWAMLGA G   PE L + GV      W+ A       G  +Y  + +         ++  ++VL+G  +G R A    P    TDP++P          YP GL        +  P    EL  KEI+
Sbjct:   50 GSRSVAVSAVAADPDRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTA-------GEQEYFTDTT--------TLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIK 224

HSP 2 Score: 41.9726 bits (97), Expect = 5.440e-22
Identity = 19/35 (54.29%), Postives = 24/35 (68.57%), Query Frame = 2

Query:  683 QNGRLAMFLHVGFFVQAIVTGRGPLENLXRHLXDP 787
            +NGRLAM   +G + Q I TG GP++NL  HL DP
Sbjct:  224 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258

The following BLAST results are available for this feature:

BLAST of EY665140 vs. ExPASy Swiss-Prot

BLAST of EY665140 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77


Match Name	E-value	Identity	Description
CB121_HORVU	1.446e-26	33.33	Chlorophyll a-b binding protein 1B-21, chloroplast...	[more]
CB2F_SOLLC	3.186e-25	77.33	Chlorophyll a-b binding protein 3B, chloroplastic ...	[more]
CB2E_SOLLC	3.186e-25	77.33	Chlorophyll a-b binding protein 3A, chloroplastic ...	[more]
CB2D_SOLLC	3.186e-25	77.33	Chlorophyll a-b binding protein 1D (Fragment) OS=S...	[more]
CB2C_SOLLC	3.186e-25	77.33	Chlorophyll a-b binding protein 1C, chloroplastic ...	[more]
CB2A_SOLLC	3.186e-25	77.33	Chlorophyll a-b binding protein 1A, chloroplastic ...	[more]
CB11_SOLLC	1.780e-23	37.42	Chlorophyll a-b binding protein 6A, chloroplastic ...	[more]
CB21_RAPSA	5.087e-23	68.67	Chlorophyll a-b binding of LHCII type 1 protein (F...	[more]
CB12_SOLLC	3.214e-22	33.70	Chlorophyll a-b binding protein 7, chloroplastic O...	[more]
CB12_PETHY	5.440e-22	32.99	Chlorophyll a-b binding protein, chloroplastic OS=...	[more]

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Properties


Property Name	Value
Genbank description	CS00-C1-101-074-E03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY665140 ID=EY665140; Name=EY665140; organism=Citrus sinensis; type=EST; length=913bp
CCACGCGTCCGCTAGAGCTCACCAACAACTCTGATCATTGTAAAATGGCA
ACCTCGACCATGGCTCTCTCCTCATCATTCGTCGGCAAGGCTGTGAACCT
TGCCCCTTCAGGCAATGAGCTGAGCAATGGTGGCCGCATCTCCATGCGTA
AAACCGGGAGCAAGTCTGTTTCTTCAGGTAGCCCGTGGTACGGCCCGGAC
AGAGTCAAGTACTTGGGTCCATTCTCTGGCGAGCCCCCAAGCTACTTGAC
TGGTGAGTTCCCTGGTGACTACGGTTGGGACACTGCTGGGCTTTCAGCTG
ACCCAGAAACCTTTGCCAAGAACCGTGAACTCGAAGTCATCCACTGCAGA
TGGGCCATGTTGGGAGCTCTTGGATGCGTCTTCCCGGAGCTCTTGGCCCG
CAACGGAGTCAAGTTCGGTGAGGCCGTGTGGTTCAAGGCGGNGGCCCATA
TCTTCAGCGAGGGCGGGCTTGACTACTTGGGGAACCCAAGCCTGATCCAC
GCTCAGAGCATCTTGGCCATCTGGGCTTGCCAGGTGGTCTTGATGGGAGC
CGTTGATGGTTACAGAATTGCTGGATGGCCGCTCGGTGAAGTGACTGACC
CATTGTACCCATGTGGCAGCTTTTATCCATTGGGGTTGGCTGATGAACCC
GNAGCTTTTGCTGAGCTCATGGTTAAGGAAATCAGAATGGAAGGTTGGCT
ATGTTTCTCCATGTTGGTTTCTTCGTTCAGGCCATTGTCACCGGCAGGGG
ACCGTTAGAGAACTTGGNCCGACACTTGNCTGACCCTGTCAATAACAATG
CCTGGGGCCTACGCACCACTTTGTCCCCGGAAGTGAGCTTCGGGTGATAA
GAGTTTTCTCTTTTCGGTNCTTGGATATCATGTAAACTGTGGGAGCTCAG
GAAGCCTTTATNG