EY665140
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of EY665140 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 7.075e-22 Identity = 73/242 (30.17%), Postives = 104/242 (42.98%), Query Frame = 3 Query: 45 MATSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTGSKSV---SSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEA--VWFKAXAHIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVDGYRIAGWP----------------LGEVTDPLYPCGS-FYPLGLADEPXAFAELMVKEIR 686 MAT + SSS ++ + G RIS T S ++ +P + L S + SYL G PGD+G+D GLS DPE F + + L EVI+ R+AMLGA G + PE+L + G+ E WF+ I G +Y + ++ ++ LMG + R W LG DP YP G F PLG + + EL +KEI+ Sbjct: 1 MATQALISSSS-----ISTSAEAARQIIGSRISQSVTRKASFVVRAASTPPVKQGANRQLWFASKQSLSYLDGRLPGDFGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADN--------YTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIK 227 HSP 2 Score: 56.9954 bits (136), Expect = 7.075e-22 Identity = 25/39 (64.10%), Postives = 31/39 (79.49%), Query Frame = 2 Query: 683 QNGRLAMFLHVGFFVQAIVTGRGPLENLXRHLXDPVNNN 799 +NGRLAM +G+F+QA+VTG GP +NL HL DPVNNN Sbjct: 227 KNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNN 265
BLAST of EY665140 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.197e-21 Identity = 77/247 (31.17%), Postives = 107/247 (43.32%), Query Frame = 3 Query: 45 MATSTMALSSS--FVGKAVNLA------PSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE---TFAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEA--VWFKAXAHIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVDGYRIAGWP----------------LGEVTDPLYPCGSFY-PLGLADEPXAFAELMVKEIR 686 MAT + SSS F +AV + PS S G + R + V G G DR + S + SYL G PGDYG+D GLS DPE F + R L EVI+ R+AMLGA+G + PE L + G+ E WF+ I G +Y + ++ ++ LMG + R W G +P YP G F+ PLG + + EL +KE++ Sbjct: 1 MATQALVSSSSLTFAAEAVRQSFRARSLPSSVGCSRKGLV--RAAATPPVKQG----GVDRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGV-IPPAGTYNYWADN--------YTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVK 229 HSP 2 Score: 54.299 bits (129), Expect = 1.197e-21 Identity = 23/39 (58.97%), Postives = 30/39 (76.92%), Query Frame = 2 Query: 683 QNGRLAMFLHVGFFVQAIVTGRGPLENLXRHLXDPVNNN 799 +NGRLAM +G+F+Q +VTG GP +NL H+ DPVNNN Sbjct: 229 KNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNN 267
BLAST of EY665140 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1) HSP 1 Score: 58.5362 bits (140), Expect = 9.688e-17 Identity = 45/139 (32.37%), Postives = 64/139 (46.04%), Query Frame = 3 Query: 237 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKA-XAHIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVDG---YRIAGWPLGEVTDPLYPCGSFYPLGLA 641 P YLTG GD G+D GL+ DPE + E+++ RWAMLG G + PE+ + G+ W+ A F+ ++ L H I W + G+V+ ++ P GEV YP G F PL A Sbjct: 64 PDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGI-INVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPKGEVG---YPGGIFNPLNFA 196 HSP 2 Score: 49.6766 bits (117), Expect = 9.688e-17 Identity = 23/37 (62.16%), Postives = 27/37 (72.97%), Query Frame = 2 Query: 686 NGRLAMFLHVGFFVQAIVTGRGPLENLXRHLXDPVNN 796 NGRLAM +GF VQ VTG+GP ENL +HL DP +N Sbjct: 208 NGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHN 244
BLAST of EY665140 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1) HSP 1 Score: 60.077 bits (144), Expect = 1.259e-16 Identity = 46/139 (33.09%), Postives = 64/139 (46.04%), Query Frame = 3 Query: 237 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKA-XAHIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVDG---YRIAGWPLGEVTDPLYPCGSFYPLGLA 641 P YLTG PGD G+D GL+ DPE + E+++ RWAMLG G + PE+ G+ W+ A F+ ++ L H I W + G+V+ ++ P GEV YP G F PL A Sbjct: 63 PGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGI-INVPKWYAAGKEEYFASSSTLFVIEFILSHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPAGEVG---YPGGIFNPLNFA 195 HSP 2 Score: 47.7506 bits (112), Expect = 1.259e-16 Identity = 20/37 (54.05%), Postives = 27/37 (72.97%), Query Frame = 2 Query: 686 NGRLAMFLHVGFFVQAIVTGRGPLENLXRHLXDPVNN 796 NGRLAM +GF +Q VTG+GP +NL +H+ DP +N Sbjct: 207 NGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWHN 243
BLAST of EY665140 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 2.711e-16 Identity = 59/157 (37.58%), Postives = 74/157 (47.13%), Query Frame = 3 Query: 234 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAXAHIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVDGYRIAG---WPLGEVTDPLYPCGSFYPLGLADEPXAFAELMVKEIRMEG 695 PP YLTGE GD G+D AGL+ADP TF + + EV HCR +ML +GC+ PELL NG F +W K + F A+ A QVV ++ +R G W E D YP F PL L E AE+ + M G Sbjct: 380 PPRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELLG-NGAWF--QIWDKVDFNRF--------------------AVVALQVV--APLEYWRGNGGFLWNDEETVDQSYP--GFDPLNLTTEYTKEAEIKNGRLAMNG 509 HSP 2 Score: 30.4166 bits (67), Expect = 2.711e-16 Identity = 15/28 (53.57%), Postives = 19/28 (67.86%), Query Frame = 2 Query: 683 QNGRLAMFLHVGFFVQAIVTGRGPLENL 766 +NGRLAM G VQ+ VTG+ P+ NL Sbjct: 501 KNGRLAMNGMFGLEVQSHVTGKSPINNL 528 HSP 3 Score: 71.633 bits (174), Expect = 6.892e-12 Identity = 34/72 (47.22%), Postives = 46/72 (63.89%), Query Frame = 3 Query: 225 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKA 440 + EPP+ LTGE+P D G+D L+ADP+ +A+ R EV H R AML +GC+ PELL G+ WF+A Sbjct: 193 NAEPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELL-------GKGAWFEA 257
BLAST of EY665140 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1) HSP 1 Score: 58.5362 bits (140), Expect = 1.403e-14 Identity = 62/224 (27.68%), Postives = 90/224 (40.18%), Query Frame = 3 Query: 147 RKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAXAHIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVDGYRIAGWPLGEVTDPLYPCGSFY-PLGLADEPXAFAELMVKEIR 686 +K+ K+V++ P + P + P +L G GDYG+D GL E AKN RE E+IH RWAML LG + E L GV + +A + G YLG P ++ IW +V+++G ++ R A + LYP G F+ PLGLA +P A+L + EI+ Sbjct: 44 KKSAKKTVTTDRPLWYPGAIS---------PDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWL--TGVTWQDA------GKVELVDGSSYLGQPLPFSISTL--IW-IEVLVIGYIEFQRNAEL---DSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIK 244 HSP 2 Score: 42.3578 bits (98), Expect = 1.403e-14 Identity = 19/37 (51.35%), Postives = 25/37 (67.57%), Query Frame = 2 Query: 683 QNGRLAMFLHVGFFVQAIVTGRGPLENLXRHLXDPVN 793 ++ RLAM +GF VQA TG+GPL N HL DP++ Sbjct: 244 KHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLH 280
BLAST of EY665140 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 3.654e-13 Identity = 46/81 (56.79%), Postives = 53/81 (65.43%), Query Frame = 3 Query: 489 SLIHAQSILAIWACQVVLMGAVDGYRI---AGWPLGEVTDPLYPCGSFYPLGLADEPXAFAELMVKEIR-----MEGWLCF 707 +LIHA+S+LAI A QV+LMGAV+GYR A GE D LYP G F PLGLAD+P F EL VKEI+ M G L F Sbjct: 4 ALIHAKSLLAILATQVLLMGAVEGYRAGNTAPGQFGEDLDRLYPGGPFDPLGLADDPDTFPELKVKEIKNGRLAMSGMLGF 84 The following BLAST results are available for this feature:
BLAST of EY665140 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 77
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Sequences
The
following sequences are available for this feature:
EST sequence >EY665140 ID=EY665140; Name=EY665140; organism=Citrus sinensis; type=EST; length=913bpback to top |