EY665140

Overview
NameEY665140
Unique NameEY665140
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length913
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10990 contig Csv1_Contig10990:668..1580. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY665140 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 7.075e-22
Identity = 73/242 (30.17%), Postives = 104/242 (42.98%), Query Frame = 3
Query:   45 MATSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTGSKSV---SSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEA--VWFKAXAHIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVDGYRIAGWP----------------LGEVTDPLYPCGS-FYPLGLADEPXAFAELMVKEIR 686
            MAT  +  SSS     ++ +        G RIS   T   S    ++ +P       + L   S +  SYL G  PGD+G+D  GLS DPE    F + + L   EVI+ R+AMLGA G + PE+L + G+   E    WF+    I   G  +Y  +           ++  ++ LMG  +  R   W                 LG   DP YP G  F PLG   +  +  EL +KEI+
Sbjct:    1 MATQALISSSS-----ISTSAEAARQIIGSRISQSVTRKASFVVRAASTPPVKQGANRQLWFASKQSLSYLDGRLPGDFGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADN--------YTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIK 227          

HSP 2 Score: 56.9954 bits (136), Expect = 7.075e-22
Identity = 25/39 (64.10%), Postives = 31/39 (79.49%), Query Frame = 2
Query:  683 QNGRLAMFLHVGFFVQAIVTGRGPLENLXRHLXDPVNNN 799
            +NGRLAM   +G+F+QA+VTG GP +NL  HL DPVNNN
Sbjct:  227 KNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNN 265          
BLAST of EY665140 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.197e-21
Identity = 77/247 (31.17%), Postives = 107/247 (43.32%), Query Frame = 3
Query:   45 MATSTMALSSS--FVGKAVNLA------PSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE---TFAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEA--VWFKAXAHIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVDGYRIAGWP----------------LGEVTDPLYPCGSFY-PLGLADEPXAFAELMVKEIR 686
            MAT  +  SSS  F  +AV  +      PS    S  G +  R   +  V  G    G DR  +    S +  SYL G  PGDYG+D  GLS DPE    F + R L   EVI+ R+AMLGA+G + PE L + G+   E    WF+    I   G  +Y  +           ++  ++ LMG  +  R   W                  G   +P YP G F+ PLG   +  +  EL +KE++
Sbjct:    1 MATQALVSSSSLTFAAEAVRQSFRARSLPSSVGCSRKGLV--RAAATPPVKQG----GVDRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGV-IPPAGTYNYWADN--------YTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVK 229          

HSP 2 Score: 54.299 bits (129), Expect = 1.197e-21
Identity = 23/39 (58.97%), Postives = 30/39 (76.92%), Query Frame = 2
Query:  683 QNGRLAMFLHVGFFVQAIVTGRGPLENLXRHLXDPVNNN 799
            +NGRLAM   +G+F+Q +VTG GP +NL  H+ DPVNNN
Sbjct:  229 KNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNN 267          
BLAST of EY665140 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 9.688e-17
Identity = 45/139 (32.37%), Postives = 64/139 (46.04%), Query Frame = 3
Query:  237 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKA-XAHIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVDG---YRIAGWPLGEVTDPLYPCGSFYPLGLA 641
            P YLTG   GD G+D  GL+ DPE      + E+++ RWAMLG  G + PE+  + G+      W+ A     F+     ++    L H   I   W   +   G+V+    ++    P GEV    YP G F PL  A
Sbjct:   64 PDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGI-INVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPKGEVG---YPGGIFNPLNFA 196          

HSP 2 Score: 49.6766 bits (117), Expect = 9.688e-17
Identity = 23/37 (62.16%), Postives = 27/37 (72.97%), Query Frame = 2
Query:  686 NGRLAMFLHVGFFVQAIVTGRGPLENLXRHLXDPVNN 796
            NGRLAM   +GF VQ  VTG+GP ENL +HL DP +N
Sbjct:  208 NGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHN 244          
BLAST of EY665140 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 1.259e-16
Identity = 46/139 (33.09%), Postives = 64/139 (46.04%), Query Frame = 3
Query:  237 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKA-XAHIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVDG---YRIAGWPLGEVTDPLYPCGSFYPLGLA 641
            P YLTG  PGD G+D  GL+ DPE      + E+++ RWAMLG  G + PE+    G+      W+ A     F+     ++    L H   I   W   +   G+V+    ++    P GEV    YP G F PL  A
Sbjct:   63 PGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGI-INVPKWYAAGKEEYFASSSTLFVIEFILSHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPAGEVG---YPGGIFNPLNFA 195          

HSP 2 Score: 47.7506 bits (112), Expect = 1.259e-16
Identity = 20/37 (54.05%), Postives = 27/37 (72.97%), Query Frame = 2
Query:  686 NGRLAMFLHVGFFVQAIVTGRGPLENLXRHLXDPVNN 796
            NGRLAM   +GF +Q  VTG+GP +NL +H+ DP +N
Sbjct:  207 NGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWHN 243          
BLAST of EY665140 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.711e-16
Identity = 59/157 (37.58%), Postives = 74/157 (47.13%), Query Frame = 3
Query:  234 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAXAHIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVDGYRIAG---WPLGEVTDPLYPCGSFYPLGLADEPXAFAELMVKEIRMEG 695
            PP YLTGE  GD G+D AGL+ADP TF + +  EV HCR +ML  +GC+ PELL  NG  F   +W K   + F                    A+ A QVV    ++ +R  G   W   E  D  YP   F PL L  E    AE+    + M G
Sbjct:  380 PPRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELLG-NGAWF--QIWDKVDFNRF--------------------AVVALQVV--APLEYWRGNGGFLWNDEETVDQSYP--GFDPLNLTTEYTKEAEIKNGRLAMNG 509          

HSP 2 Score: 30.4166 bits (67), Expect = 2.711e-16
Identity = 15/28 (53.57%), Postives = 19/28 (67.86%), Query Frame = 2
Query:  683 QNGRLAMFLHVGFFVQAIVTGRGPLENL 766
            +NGRLAM    G  VQ+ VTG+ P+ NL
Sbjct:  501 KNGRLAMNGMFGLEVQSHVTGKSPINNL 528          

HSP 3 Score: 71.633 bits (174), Expect = 6.892e-12
Identity = 34/72 (47.22%), Postives = 46/72 (63.89%), Query Frame = 3
Query:  225 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKA 440
            + EPP+ LTGE+P D G+D   L+ADP+ +A+ R  EV H R AML  +GC+ PELL       G+  WF+A
Sbjct:  193 NAEPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELL-------GKGAWFEA 257          
BLAST of EY665140 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 1.403e-14
Identity = 62/224 (27.68%), Postives = 90/224 (40.18%), Query Frame = 3
Query:  147 RKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAXAHIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVDGYRIAGWPLGEVTDPLYPCGSFY-PLGLADEPXAFAELMVKEIR 686
            +K+  K+V++  P + P  +          P +L G   GDYG+D  GL    E             AKN                                RE E+IH RWAML  LG +  E L   GV + +A        +    G  YLG P      ++  IW  +V+++G ++  R A     +    LYP G F+ PLGLA +P   A+L + EI+
Sbjct:   44 KKSAKKTVTTDRPLWYPGAIS---------PDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWL--TGVTWQDA------GKVELVDGSSYLGQPLPFSISTL--IW-IEVLVIGYIEFQRNAEL---DSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIK 244          

HSP 2 Score: 42.3578 bits (98), Expect = 1.403e-14
Identity = 19/37 (51.35%), Postives = 25/37 (67.57%), Query Frame = 2
Query:  683 QNGRLAMFLHVGFFVQAIVTGRGPLENLXRHLXDPVN 793
            ++ RLAM   +GF VQA  TG+GPL N   HL DP++
Sbjct:  244 KHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLH 280          
BLAST of EY665140 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.654e-13
Identity = 46/81 (56.79%), Postives = 53/81 (65.43%), Query Frame = 3
Query:  489 SLIHAQSILAIWACQVVLMGAVDGYRI---AGWPLGEVTDPLYPCGSFYPLGLADEPXAFAELMVKEIR-----MEGWLCF 707
            +LIHA+S+LAI A QV+LMGAV+GYR    A    GE  D LYP G F PLGLAD+P  F EL VKEI+     M G L F
Sbjct:    4 ALIHAKSLLAILATQVLLMGAVEGYRAGNTAPGQFGEDLDRLYPGGPFDPLGLADDPDTFPELKVKEIKNGRLAMSGMLGF 84          
The following BLAST results are available for this feature:
BLAST of EY665140 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
CB13_SOLLC7.075e-2230.17Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_PEA1.197e-2131.17Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB24_ARATH9.688e-1732.37Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB24_PEA1.259e-1633.09Chlorophyll a-b binding protein P4, chloroplastic ... [more]
LH18_EUGGR2.711e-1637.58Light-harvesting complex I LH38 proteins (Fragment... [more]
CB4A_ARATH1.403e-1427.68Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB21_EUGGR3.654e-1356.79Chlorophyll a-b binding protein of LHCII type 1 (F... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-074-E03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665140 ID=EY665140; Name=EY665140; organism=Citrus sinensis; type=EST; length=913bp
CCACGCGTCCGCTAGAGCTCACCAACAACTCTGATCATTGTAAAATGGCA
ACCTCGACCATGGCTCTCTCCTCATCATTCGTCGGCAAGGCTGTGAACCT
TGCCCCTTCAGGCAATGAGCTGAGCAATGGTGGCCGCATCTCCATGCGTA
AAACCGGGAGCAAGTCTGTTTCTTCAGGTAGCCCGTGGTACGGCCCGGAC
AGAGTCAAGTACTTGGGTCCATTCTCTGGCGAGCCCCCAAGCTACTTGAC
TGGTGAGTTCCCTGGTGACTACGGTTGGGACACTGCTGGGCTTTCAGCTG
ACCCAGAAACCTTTGCCAAGAACCGTGAACTCGAAGTCATCCACTGCAGA
TGGGCCATGTTGGGAGCTCTTGGATGCGTCTTCCCGGAGCTCTTGGCCCG
CAACGGAGTCAAGTTCGGTGAGGCCGTGTGGTTCAAGGCGGNGGCCCATA
TCTTCAGCGAGGGCGGGCTTGACTACTTGGGGAACCCAAGCCTGATCCAC
GCTCAGAGCATCTTGGCCATCTGGGCTTGCCAGGTGGTCTTGATGGGAGC
CGTTGATGGTTACAGAATTGCTGGATGGCCGCTCGGTGAAGTGACTGACC
CATTGTACCCATGTGGCAGCTTTTATCCATTGGGGTTGGCTGATGAACCC
GNAGCTTTTGCTGAGCTCATGGTTAAGGAAATCAGAATGGAAGGTTGGCT
ATGTTTCTCCATGTTGGTTTCTTCGTTCAGGCCATTGTCACCGGCAGGGG
ACCGTTAGAGAACTTGGNCCGACACTTGNCTGACCCTGTCAATAACAATG
CCTGGGGCCTACGCACCACTTTGTCCCCGGAAGTGAGCTTCGGGTGATAA
GAGTTTTCTCTTTTCGGTNCTTGGATATCATGTAAACTGTGGGAGCTCAG
GAAGCCTTTATNG
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