EY665132

Overview
NameEY665132
Unique NameEY665132
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length902
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY665132_ssr17 microsatellite EY665132_ssr17:17..32. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12578 contig Csv1_Contig12578:123..1026. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY665132 vs. ExPASy Swiss-Prot
Match: ERG3_CANDC (C-5 sterol desaturase OS=Candida dubliniensis (strain CD36 / CBS 7987 / NCPF 3949 / NRRL Y-17841) GN=ERG3 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.236e-13
Identity = 64/214 (29.91%), Postives = 100/214 (46.73%), Query Frame = 1
Query:  175 VLQTWLRNYIAGTLLYLVSGLLWCFYVYYLKRNVYVPKDDIPTRKAMLLQIFVAMKAMPWYVGLPTVSEYMIE-NGWTKCFARISDI--GWFAXXXXXXXXXXXXEFGIYWMHRELHDIKFLYKHLHATHHIYNKQNTLSPFAGLAFHPLDGILXALPHVIALFIVPTHFTTHLXLLFPRAIWTTNIHDCIHGKLWP----WMGAGYHTIHHTH 795
            VL  ++   + G LLY +   L   YV+   + ++     +  +  M L+I  A  A+P  V L T+  +++E +G++  +  I++   G+ A            + GIY++HR LH    +YK LH  HH   K    +PFA  AFHP+DG   +LP+ +   + P H   +L L      WT  IHD   G  W       G   HT+HH +
Sbjct:  119 VLSLFIITTLFGWLLYFIVAYL--SYVFVFDKKIFNHPRYL--KNQMSLEIKRATSAIPVMV-LLTIPFFLLELHGYSFLYEEINESTGGYKAILWQIPKFILFTDCGIYFLHRWLH-WPSVYKALHKPHH---KWIVCTPFASHAFHPVDGFFQSLPYHLYPLLFPLHKVLYLLLFTFVNFWTVMIHD---GSYWSNDPVVNGTACHTVHHLY 320          
BLAST of EY665132 vs. ExPASy Swiss-Prot
Match: ERG31_SCHPO (Probable C-5 sterol desaturase 1 OS=Schizosaccharomyces pombe GN=SPAC1687.16c PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.108e-13
Identity = 68/244 (27.87%), Postives = 109/244 (44.67%), Query Frame = 1
Query:   79 DYLQLFVDETTL---YNRIVLANLLPFKWWDPLPHVLQTWLRNYIAGTLLYLVSGLLWCFYVYYLKRNVYVPKDDIPTRKAMLLQIFVAMKAMPWYVGLPTVSEYMIE-NGWTKCFARISDIGWFAXXXXXXXXXXXXEFGIYWMHRELHDIKFLYKHLHATHHIYNKQNTLSPFAGLAFHPLDGILXALPHVIALFIVPTHFTTHLXLLFPRAIWTTNIHDCIHGKLWPWM-GAGYHTIHHTH 795
            DYL  + D+  L   YN +      P    + +   +  +   +  G  LYL    L   +V+  K  +  PK     +  + +++  A++ +P  + L TV  ++ E +G++  +  ISD G               +FGIYW HR LH  +++Y  LH  HH   K    +P+A  AF   DG L +LP+ +  F  P H  T+L L      W+  IHD  +    P + GA +H  HH +
Sbjct:    2 DYLLNYADQYALDSIYNAVY-----PLARDNIVRQSISLFFLTWFGGMFLYLTFASLSYQFVFD-KSLMDHPKF---LKNQVFMEVLTALQNLPG-MALLTVPWFLAELHGYSYLYDNISDYGLKYFLCSLPLFVMFSDFGIYWAHRFLHH-RYVYPRLHKLHH---KWIICTPYASHAFKSADGFLQSLPYHLFPFFFPLHKLTYLALFTFVNFWSIMIHDGKYISNNPIINGAAHHNGHHIY 231          
BLAST of EY665132 vs. ExPASy Swiss-Prot
Match: ERG3_NEUCR (Probable C-5 sterol desaturase OS=Neurospora crassa GN=NCU06207 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.696e-13
Identity = 42/104 (40.38%), Postives = 57/104 (54.81%), Query Frame = 1
Query:  481 EFGIYWMHRELHDIKFLYKHLHATHHIYNKQNTLSPFAGLAFHPLDGILXALPHVIALFIVPTHFTTHLXLLFPRAIWTTNIHDCIHGKLWPWM-GAGYHTIHH 789
            +FGIYW+HR LH    +YKHLH  HH   K    +P+A  AFHP+DG   ++P+ I  FI P     ++ L      WT  IHD  +    P + GA  H++HH
Sbjct:  174 DFGIYWIHRGLHH-PLVYKHLHKPHH---KWIMPTPYASHAFHPIDGFAQSIPYHIFPFIFPLQKMAYVGLFVFINFWTIMIHDGEYYANNPVINGAACHSVHH 273          
BLAST of EY665132 vs. ExPASy Swiss-Prot
Match: ERG3_LEPMC (C-5 sterol desaturase OS=Leptosphaeria maculans GN=ERG3 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.781e-12
Identity = 41/103 (39.81%), Postives = 53/103 (51.46%), Query Frame = 1
Query:  490 IYWMHRELHDIKFLYKHLHATHHIYNKQNTLSPFAGLAFHPLDGILXALPHVIALFIVPTHFTTHLXLLFPRAIWTTNIHDCIHGKLWPWM-GAGYHTIHHTH 795
            IYW+HR LH    +YKH+H  HH   K    +PFA  AFHP+DG    LP+ I  F+ P      +       IWT  IHD  +    P + GA  HT+HH +
Sbjct:  188 IYWIHRGLHH-PMVYKHIHKPHH---KWIMPTPFASHAFHPIDGYAQGLPYYIFPFLFPLSKIASVAFFVFVNIWTVLIHDGEYAHNSPIINGAACHTMHHLY 286          
The following BLAST results are available for this feature:
BLAST of EY665132 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
ERG3_CANDC1.236e-1329.91C-5 sterol desaturase OS=Candida dubliniensis (str... [more]
ERG31_SCHPO2.108e-1327.87Probable C-5 sterol desaturase 1 OS=Schizosaccharo... [more]
ERG3_NEUCR4.696e-1340.38Probable C-5 sterol desaturase OS=Neurospora crass... [more]
ERG3_LEPMC6.781e-1239.81C-5 sterol desaturase OS=Leptosphaeria maculans GN... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-074-D06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665132 ID=EY665132; Name=EY665132; organism=Citrus sinensis; type=EST; length=902bp
CCACGCGTCCGGCAGACTCTCTCTCTCTCTCTTTCTCTCTTTTTTTTTTA
TCGGTCCAAATCGCCGGCGATGGGCGACGATTATCTGCAGCTGTTCGTGG
ACGAGACCACTTTGTACAACCGCATCGTGTTGGCCAACTTGTTACCCTTC
AAATGGTGGGACCCTCTTCCTCACGTTTTGCAGACGTGGCTTCGTAACTA
CATTGCCGGAACTCTTCTCTACTTAGTTTCTGGCCTCTTGTGGTGCTTCT
ATGTCTACTACTTGAAACGCAACGTTTATGTCCCTAAAGATGACATCCCT
ACTAGAAAAGCTATGCTGTTGCAGATATTTGTTGCTATGAAGGCGATGCC
ATGGTACGTTGGCCTTCCAACTGTTTCTGAGTACATGATTGAAAATGGCT
GGACAAAGTGTTTTGCCAGAATAAGTGACATTGGTTGGTTTGCTTACCTG
GTCTATTTGGTTATTTACCTTGTGCTTGTCGAGTTTGGGATTTACTGGAT
GCACAGAGAATTGCATGACATAAAGTTTCTTTATAAGCATCTTCATGCAA
CCCACCATATATACAACAAGCAGAATACCCTTTCTCCATTTGCTGGTTTG
GCATTTCACCCACTGGATGGTATACTGCANGCCCTTCCACATGTTATAGC
ACTCTTCATAGTGCCAACCCATTTTACCACACATTTANGGCTCTTATTCC
CTCGAGCCATATGGACAACAAACATTCATGATTGTATCCATGGCAAGCTA
TGGCCTTGGATGGGCGCTGGCTATCACACTATTCACCACACACATACCGA
CATATTATGGTCATTATACCATATGGATGGACTGGATGCTGGNAACTCTT
TGTGATCCANCTGATGATGACTGGGGAAAGANAAATGATGAACCTTGACC
TA
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