EY665131

Overview
NameEY665131
Unique NameEY665131
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length715
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665131 vs. ExPASy Swiss-Prot
Match: RS19_HUMAN (40S ribosomal protein S19 OS=Homo sapiens GN=RPS19 PE=1 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 1.508e-39
Identity = 73/137 (53.28%), Postives = 102/137 (74.45%), Query Frame = 3
Query:  102 TVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQVAGRIVVA 512
            TVKDV+  EFV+A +A LK+SGK+++P W D VK A+ KELAPYD +W+Y RAAS AR +YLR G GVGS  +IYGG +RNG  P HF + S ++AR +LQ L+ + +++ +  GGR++T  GQRDLD++AG++  A
Sbjct:    5 TVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKLTPQGQRDLDRIAGQVAAA 141          
BLAST of EY665131 vs. ExPASy Swiss-Prot
Match: RS19_BOVIN (40S ribosomal protein S19 OS=Bos taurus GN=RPS19 PE=2 SV=3)

HSP 1 Score: 162.925 bits (411), Expect = 1.508e-39
Identity = 73/137 (53.28%), Postives = 102/137 (74.45%), Query Frame = 3
Query:  102 TVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQVAGRIVVA 512
            TVKDV+  EFV+A +A LK+SGK+++P W D VK A+ KELAPYD +W+Y RAAS AR +YLR G GVGS  +IYGG +RNG  P HF + S ++AR +LQ L+ + +++ +  GGR++T  GQRDLD++AG++  A
Sbjct:    5 TVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKLTPQGQRDLDRIAGQVAAA 141          
BLAST of EY665131 vs. ExPASy Swiss-Prot
Match: RS19_AEQIR (40S ribosomal protein S19 OS=Aequipecten irradians GN=RPS19 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.483e-39
Identity = 67/134 (50.00%), Postives = 100/134 (74.63%), Query Frame = 3
Query:  102 TVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQVAGRI 503
            +VKDV  H F KA +A LK+SGKM++P W  I+K ++F EL+PYD DW+Y RAAS+ R +Y+R   GVG+  +IYG  KRNG+ P H+C+SSG++AR +LQ L+   +++ +  GGR++TS GQ+DLD++A ++
Sbjct:    4 SVKDVDSHTFTKALAAFLKKSGKMKIPEWATIIKLSKFNELSPYDEDWFYTRAASICRHLYIRSPAGVGALTKIYGDRKRNGTVPSHYCRSSGSVARRVLQALETQKLVEKDANGGRKLTSQGQKDLDRIAAQV 137          
BLAST of EY665131 vs. ExPASy Swiss-Prot
Match: RS19_ICTPU (40S ribosomal protein S19 OS=Ictalurus punctatus GN=rps19 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 9.773e-39
Identity = 74/137 (54.01%), Postives = 101/137 (73.72%), Query Frame = 3
Query:  102 TVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQVAGRIVVA 512
            TVKDV+  EFV+A +A LK+SGK+++P W DIVK A+ KELAP D +W+Y+RAAS  R +YLR G+GVGS  +IYGG KRNG  P HF   S  +AR +LQ L+ + +++ +P GGRR+T  G RDLD++AG++  A
Sbjct:    7 TVKDVNQQEFVRALAAFLKKSGKLKVPDWVDIVKLAKHKELAPCDDNWFYIRAASTVRHLYLRGGVGVGSMIKIYGGRKRNGVCPSHFSVGSKNVARKVLQALEALKMVEKDPNGGRRLTPQGTRDLDRIAGQVAAA 143          
BLAST of EY665131 vs. ExPASy Swiss-Prot
Match: RS19_PIG (40S ribosomal protein S19 (Fragment) OS=Sus scrofa GN=RPS19 PE=2 SV=3)

HSP 1 Score: 159.073 bits (401), Expect = 2.177e-38
Identity = 72/132 (54.55%), Postives = 98/132 (74.24%), Query Frame = 3
Query:  102 TVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQVAG 497
            TVKDV+  EFV+A +A LK+SGK+++P W D VK A  KELAPYD +W+Y RAAS AR +YLR G GVGS  +IYGG +RNG  P HF + S ++AR +LQ L+ + +++ +  GGR++T  GQRDLD++AG
Sbjct:    5 TVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAXHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKLTPQGQRDLDRIAG 136          
BLAST of EY665131 vs. ExPASy Swiss-Prot
Match: RS19A_DROME (40S ribosomal protein S19a OS=Drosophila melanogaster GN=RpS19a PE=2 SV=3)

HSP 1 Score: 158.688 bits (400), Expect = 2.844e-38
Identity = 72/135 (53.33%), Postives = 98/135 (72.59%), Query Frame = 3
Query:  102 TVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQVAGRIV 506
            TVKD+  H   KA +  LK++GK+++P   DIVKTA+FKELAPYDPDW+YVR AS+ R +Y R   GVGS  +IYGG KRNG  P HFC+++   AR  LQ L++  +++  P GGR+++S GQRDLD++A +IV
Sbjct:    5 TVKDIDQHAVTKAVAVFLKKTGKLKVPDQMDIVKTAKFKELAPYDPDWFYVRCASILRHLYHRSPAGVGSITKIYGGRKRNGVHPSHFCRAADGAARKALQALEHARLVEKHPDGGRKLSSIGQRDLDRIANQIV 139          
BLAST of EY665131 vs. ExPASy Swiss-Prot
Match: RS19B_SCHPO (40S ribosomal protein S19-B OS=Schizosaccharomyces pombe GN=rps19b PE=2 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 4.850e-38
Identity = 72/131 (54.96%), Postives = 94/131 (71.76%), Query Frame = 3
Query:  102 TVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQVA 494
            +VKDV   +F+ AY+A LKRSGKM  P W DIVKT   KELAPYDPDWYYVRAA++AR IYLR+ +GVG   ++YGGS   G RP H    SG++ R ++Q L+ + +++    GGRRI+  GQRDLD++A
Sbjct:    5 SVKDVDAQQFINAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAIARHIYLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDNGGRRISQQGQRDLDRIA 135          
BLAST of EY665131 vs. ExPASy Swiss-Prot
Match: RS19A_SCHPO (40S ribosomal protein S19-A OS=Schizosaccharomyces pombe GN=rps19a PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 8.273e-38
Identity = 72/131 (54.96%), Postives = 94/131 (71.76%), Query Frame = 3
Query:  102 TVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQVA 494
            +VKDV   +F+ AY+A LKRSGKM  P W DIVKT   KELAPYDPDWYYVRAA++AR IYLR+ +GVG   ++YGGS   G RP H    SG++ R ++Q L+ + +++    GGRRI+  GQRDLD++A
Sbjct:    5 SVKDVDAQKFITAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAIARHIYLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDNGGRRISQQGQRDLDRIA 135          
BLAST of EY665131 vs. ExPASy Swiss-Prot
Match: RS19_GILMI (40S ribosomal protein S19 OS=Gillichthys mirabilis GN=rps19 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.411e-37
Identity = 71/137 (51.82%), Postives = 101/137 (73.72%), Query Frame = 3
Query:  102 TVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQVAGRIVVA 512
            TVKDV+  EFV+A +A LK+SGK+++P W D+VK  + KELAP D +W+Y+RAAS  R +YLR G GVGS  +IYGG +RNG  P H+ + S  +AR +LQ L+ + +I+ +P GGRR+T+ G RDLD++AG++  A
Sbjct:    5 TVKDVNQQEFVRALAAFLKKSGKLKVPDWVDLVKLGRHKELAPSDENWFYIRAASTVRHLYLRGGAGVGSMTKIYGGRQRNGVCPAHYSEGSKNVARKVLQALELLKMIEKDPNGGRRLTAQGTRDLDRIAGQVSAA 141          
BLAST of EY665131 vs. ExPASy Swiss-Prot
Match: RS19_DICDI (40S ribosomal protein S19 OS=Dictyostelium discoideum GN=rps19 PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.407e-37
Identity = 69/138 (50.00%), Postives = 104/138 (75.36%), Query Frame = 3
Query:   93 TARTVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP-KGGRRITSSGQRDLDQVAGRI 503
            TA T+KDV P EF+  Y+  LK++G++++P W DI KTA ++EL P +PDW Y R A++ARK+Y+R G GV ++RR++GG++RNG RP HF   +G   R+ L+QLQN+ +I+ +  KGGR IT++G+RDLD++A +I
Sbjct:    4 TAVTLKDVCPQEFIATYARFLKKTGRVQIPKWNDIAKTATYRELPPTNPDWIYYRIATLARKVYIRGGDGVATYRRVFGGNRRNGVRPNHFADVNGGNIRYCLKQLQNLKVIETDAVKGGRTITATGRRDLDRIAKQI 141          
The following BLAST results are available for this feature:
BLAST of EY665131 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
RS19_HUMAN1.508e-3953.2840S ribosomal protein S19 OS=Homo sapiens GN=RPS19... [more]
RS19_BOVIN1.508e-3953.2840S ribosomal protein S19 OS=Bos taurus GN=RPS19 P... [more]
RS19_AEQIR7.483e-3950.0040S ribosomal protein S19 OS=Aequipecten irradians... [more]
RS19_ICTPU9.773e-3954.0140S ribosomal protein S19 OS=Ictalurus punctatus G... [more]
RS19_PIG2.177e-3854.5540S ribosomal protein S19 (Fragment) OS=Sus scrofa... [more]
RS19A_DROME2.844e-3853.3340S ribosomal protein S19a OS=Drosophila melanogas... [more]
RS19B_SCHPO4.850e-3854.9640S ribosomal protein S19-B OS=Schizosaccharomyces... [more]
RS19A_SCHPO8.273e-3854.9640S ribosomal protein S19-A OS=Schizosaccharomyces... [more]
RS19_GILMI1.411e-3751.8240S ribosomal protein S19 OS=Gillichthys mirabilis... [more]
RS19_DICDI2.407e-3750.0040S ribosomal protein S19 OS=Dictyostelium discoid... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-074-D05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665131 ID=EY665131; Name=EY665131; organism=Citrus sinensis; type=EST; length=715bp
CCACGCGTCCGGAGAGAGATATAAGCAATTCCACCACCTTCTTGCAAAAG
CGAAGCTTTGAGTCGCTGTCCTGCTCTGTTGTGACCATGGCTACCGCTAG
GACTGTCAAAGATGTGTCTCCTCATGAGTTTGTGAAGGCTTACTCTGCTC
ATCTCAAGCGATCTGGCAAGATGGAACTTCCCCCATGGACTGACATAGTC
AAGACTGCCCAGTTCAAGGAGCTTGCTCCCTATGACCCTGACTGGTACTA
TGTCAGAGCTGCCTCCATGGCAAGGAAAATCTACTTGAGGCAAGGGCTTG
GTGTGGGTTCTTTCAGGAGGATTTATGGTGGAAGTAAGAGGAATGGAAGT
CGTCCACCTCACTTCTGCAAAAGCAGTGGTGCTATTGCTCGCCACATTCT
TCAACAGTTGCAGAACATGAACATTATAGATATTGAGCCCAAGGGTGGAA
GGAGAATTACTTCCAGTGGCCAACGAGACCTTGACCAAGTTGCCGGAAGG
ATTGTCGTTGCTCCTTGAAGCTGCTTGACGGTGATCTTGTTTGATTTGTT
GCAGGTTTTTGTTAGTTGATGGAATGATGTTGCATTCTTAAGTAAGTTTT
GATTCCAAGCATGGACTTTTTATGATGAACCCAACTTCAGTTTTGTTGCT
TTTAGAATGTTGACATTTATCTGTAGTATTCACTATAAATTCCTGTTATC
CAAAAAAAAAAAAAA
back to top