EY665131

Overview
NameEY665131
Unique NameEY665131
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length715
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10777 contig Csv1_Contig10777:1..706. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY665131 vs. ExPASy Swiss-Prot
Match: RS19E_METJA (30S ribosomal protein S19e OS=Methanocaldococcus jannaschii GN=rps19e PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.957e-20
Identity = 51/134 (38.06%), Postives = 74/134 (55.22%), Query Frame = 3
Query:  102 TVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQVAGRI 503
            TV DV   + ++  +  LK    + +P W D VKT   +E  P   DW+Y+R AS+ RKIY+   +GV   R  YGG K  G  P HF K SG I R  LQ+L+ + +++  P+ GR +T  G+  LD +A  +
Sbjct:    3 TVYDVPADKLIQKTAEKLKEMN-IGVPEWVDFVKTGVSRERRPDQDDWWYIRCASILRKIYIYGPVGVSRLRTAYGGRKNRGHEPEHFYKGSGNIIRKALQELEKLGLVEKTPE-GRVVTPKGRSFLDNIAKEV 134          
BLAST of EY665131 vs. ExPASy Swiss-Prot
Match: RS19E_ARCFU (30S ribosomal protein S19e OS=Archaeoglobus fulgidus GN=rps19e PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.264e-19
Identity = 54/132 (40.91%), Postives = 75/132 (56.82%), Query Frame = 3
Query:  102 TVKDVSPHEFVKAYSAHLKRSGKMELPP-WTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQVA 494
            TV DV     +K  +  LK    M  PP W   VKT   KE +P   DW+Y+R AS+ R++Y+   +G+   R  YGG KR GS+PP F K SGAI R+ L QL+ +  +  + + GR +T  G+  LD+VA
Sbjct:    3 TVYDVPADLLIKRVAERLK---DMVAPPEWAKYVKTGVHKERSPEQDDWWYLRLASIFRRVYIDGPVGIERLRTFYGGRKRRGSKPPKFRKGSGAIVRNALHQLEQLGFVK-KTREGRVVTPMGRSFLDKVA 130          
BLAST of EY665131 vs. ExPASy Swiss-Prot
Match: RS19E_PYRHO (30S ribosomal protein S19e OS=Pyrococcus horikoshii GN=rps19e PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.586e-19
Identity = 49/131 (37.40%), Postives = 70/131 (53.44%), Query Frame = 3
Query:  102 TVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQVA 494
            TV DV     V+  +  LK   +++ P W   VKT + KE  P   DW+Y R AS+ R++Y+   +G+   R  YGG K  G  P  F K+ G+I R  LQQL+    I+  P  GR +T  G+  LD++A
Sbjct:    3 TVYDVPGDLLVERVAQRLKEIPEIKPPEWAPFVKTGRHKERLPEQEDWWYYRVASILRRVYIDGPVGIERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFIEKVPGKGRVVTPKGRSFLDKIA 133          
BLAST of EY665131 vs. ExPASy Swiss-Prot
Match: RS19E_AERPE (30S ribosomal protein S19e OS=Aeropyrum pernix GN=rps19e PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.586e-19
Identity = 48/110 (43.64%), Postives = 66/110 (60.00%), Query Frame = 3
Query:  180 PPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLR-QGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQVAGRIV 506
            P W    KT   KE  P D DW+YVRAAS+ RK+Y   + +G+ +FR IYGG +  GS P HF K+ G++ R ILQQL+   ++   P  GR I+ +G+  LD  A  I+
Sbjct:   30 PAWAYFAKTGPHKERPPTDRDWWYVRAASILRKLYKSPEPIGIETFRTIYGGRQNRGSAPEHFRKAGGSVPRKILQQLEEAGLVVKVPGRGRTISPAGRSLLDTTAREIM 139          
BLAST of EY665131 vs. ExPASy Swiss-Prot
Match: RS19E_HALMA (30S ribosomal protein S19e OS=Haloarcula marismortui GN=rps19e PE=1 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 3.059e-16
Identity = 49/139 (35.25%), Postives = 73/139 (52.52%), Query Frame = 3
Query:  102 TVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGS----RPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQVAGRIV 506
            T+ DV P E ++A +  L     +E P W +  KT   +EL P   D++  RAAS+ RK+ +   +GV + R  YG SK+  +    RP    K SG I R  LQQL++   ++     GRR+T  G+  LD  AG ++
Sbjct:    3 TLYDVPPEELIEALTETLADEDDIEAPDWAEFTKTGVDRELPPEQEDFWTRRAASLLRKVAVDGPVGVNALRSEYGTSKQGTTRYRVRPHQKTKGSGNIIRTALQQLEDAGYVETSENDGRRVTGDGRSLLDDTAGDLL 141          
BLAST of EY665131 vs. ExPASy Swiss-Prot
Match: RS19E_THEVO (30S ribosomal protein S19e OS=Thermoplasma volcanium GN=rps19e PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.769e-15
Identity = 46/135 (34.07%), Postives = 65/135 (48.15%), Query Frame = 3
Query:  102 TVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQVAGRIV 506
            +VK V     +   S  LK   K++ P W   VKT   KE  P   DW YVRAASM RK+Y+   LG+      YGG    GS+  H    S +I R +  +L++  ++    K GR ++  G   LD  +  I+
Sbjct:    3 SVKYVPSDMLINYVSGKLKEEKKIKEPNWVKFVKTGVSKEKPPLQDDWIYVRAASMLRKLYINGYLGISRMSSEYGGKVDRGSKRYHAASGSRSITRFLFHELESAGLVQKTQK-GRSLSPQGMSLLDNASKEII 136          
BLAST of EY665131 vs. ExPASy Swiss-Prot
Match: RS19E_THEAC (30S ribosomal protein S19e OS=Thermoplasma acidophilum GN=rps19e PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.679e-14
Identity = 45/135 (33.33%), Postives = 68/135 (50.37%), Query Frame = 3
Query:  102 TVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQVAGRIV 506
            +VK V     +   S  LK   K+  P W+  VKT   +E +P + DW YVRAA+M RK+Y+   LG+      YGG    GS+  H  + S +I R++  +L+    +   PK GR ++  G   LD  +  I+
Sbjct:    3 SVKYVPSDLLINYVSEKLKSEKKIAEPDWSKYVKTGISREKSPVNRDWIYVRAAAMLRKLYINGYLGISRMSSEYGGKVDRGSKRYHAAQGSRSIIRYLFHELEKAGYVQKTPK-GRSLSPQGMSLLDNASKDII 136          
BLAST of EY665131 vs. ExPASy Swiss-Prot
Match: RS19_ENCCU (40S ribosomal protein S19 OS=Encephalitozoon cuniculi GN=RPS19 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.601e-11
Identity = 37/133 (27.82%), Postives = 70/133 (52.63%), Query Frame = 3
Query:  105 VKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQVAGRI 503
            + +V P +F +A  ++LK + ++      DI+KT + +E AP + DWY+ R AS+ R+I ++  +      + YG  K  G RP  +  +   I   +L+ L+NM  I+  PK    +T  G+  + ++  ++
Sbjct:    5 IYEVMPEKFNEALKSYLKSTNEVVPLQDHDIMKTGEGREQAPIEEDWYFTRMASIVRQISIKGAVTSEFLAKRYGSLKNRGCRPSKYVGAYPEIGESVLENLKNMGWINEHPKD--MLTEKGKTIVREIIEKV 135          
The following BLAST results are available for this feature:
BLAST of EY665131 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
RS19E_METJA5.957e-2038.0630S ribosomal protein S19e OS=Methanocaldococcus j... [more]
RS19E_ARCFU2.264e-1940.9130S ribosomal protein S19e OS=Archaeoglobus fulgid... [more]
RS19E_PYRHO6.586e-1937.4030S ribosomal protein S19e OS=Pyrococcus horikoshi... [more]
RS19E_AERPE6.586e-1943.6430S ribosomal protein S19e OS=Aeropyrum pernix GN=... [more]
RS19E_HALMA3.059e-1635.2530S ribosomal protein S19e OS=Haloarcula marismort... [more]
RS19E_THEVO5.769e-1534.0730S ribosomal protein S19e OS=Thermoplasma volcani... [more]
RS19E_THEAC1.679e-1433.3330S ribosomal protein S19e OS=Thermoplasma acidoph... [more]
RS19_ENCCU6.601e-1127.8240S ribosomal protein S19 OS=Encephalitozoon cunic... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-074-D05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665131 ID=EY665131; Name=EY665131; organism=Citrus sinensis; type=EST; length=715bp
CCACGCGTCCGGAGAGAGATATAAGCAATTCCACCACCTTCTTGCAAAAG
CGAAGCTTTGAGTCGCTGTCCTGCTCTGTTGTGACCATGGCTACCGCTAG
GACTGTCAAAGATGTGTCTCCTCATGAGTTTGTGAAGGCTTACTCTGCTC
ATCTCAAGCGATCTGGCAAGATGGAACTTCCCCCATGGACTGACATAGTC
AAGACTGCCCAGTTCAAGGAGCTTGCTCCCTATGACCCTGACTGGTACTA
TGTCAGAGCTGCCTCCATGGCAAGGAAAATCTACTTGAGGCAAGGGCTTG
GTGTGGGTTCTTTCAGGAGGATTTATGGTGGAAGTAAGAGGAATGGAAGT
CGTCCACCTCACTTCTGCAAAAGCAGTGGTGCTATTGCTCGCCACATTCT
TCAACAGTTGCAGAACATGAACATTATAGATATTGAGCCCAAGGGTGGAA
GGAGAATTACTTCCAGTGGCCAACGAGACCTTGACCAAGTTGCCGGAAGG
ATTGTCGTTGCTCCTTGAAGCTGCTTGACGGTGATCTTGTTTGATTTGTT
GCAGGTTTTTGTTAGTTGATGGAATGATGTTGCATTCTTAAGTAAGTTTT
GATTCCAAGCATGGACTTTTTATGATGAACCCAACTTCAGTTTTGTTGCT
TTTAGAATGTTGACATTTATCTGTAGTATTCACTATAAATTCCTGTTATC
CAAAAAAAAAAAAAA
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