EY665129

Overview
NameEY665129
Unique NameEY665129
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length914
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY665129_ssr26 microsatellite EY665129_ssr26:26..45. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY665129 vs. ExPASy Swiss-Prot
Match: CHAC_SCHPO (Cation transport regulator-like protein OS=Schizosaccharomyces pombe GN=SPBC31F10.03 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.349e-15
Identity = 64/195 (32.82%), Postives = 91/195 (46.67%), Query Frame = 3
Query:  171 WVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQE-------------TICWGVAYCVRGGPEKERLAM-EYLERRECEYDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLENAMFDIGHDDR-LHI-ELGNEVRKEL 707
            WVFGYGSL+W+P   YD  I  FIK Y R F +   DHRGT   P    TL   +E               CWG+A+ +   P K    + EYL+ RE    +   V  Y       P L   +V+  T     +  +     L +MA+ I+T  G  G+N  YLF+L   +  +  + + +H+ EL  EVRK++
Sbjct:   11 WVFGYGSLIWHPPPHYDYSIPCFIKGYVRRFWMRSEDHRGTVNSPGLVLTLIPYEEWKQFSDWSFTPFDEGCWGMAFRI---PAKYATQVREYLDDREVNGYTAHSVPVYAHTGDEIPVLENCLVYVGTS---KSPQFQPSDDLTQMAKIISTRRGKSGDNFVYLFELAKCLRHLSPESKDIHVFELEAEVRKQM 199          
BLAST of EY665129 vs. ExPASy Swiss-Prot
Match: CHAC_YEAST (Cation transport regulator-like protein OS=Saccharomyces cerevisiae GN=YER163C PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.396e-12
Identity = 55/198 (27.78%), Postives = 83/198 (41.92%), Query Frame = 3
Query:  171 WVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTL-------------------------EKSQETICWGVAYCVRGGPEKERLAMEYLERRECEYDSKTLVDFYREGEPSQPALTG---------------VIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLENAM 644
            WV GYGSL++ P   Y  +I   I  + R F  +  DHRGTP +P R  TL                         +   + +  GV Y +   PE  +   EYL  RE    +   V+ + E      A  G               V++ +     + N+ ++GP  ++E A+ IA + GP G+N +YL KLE A+
Sbjct:    9 WVLGYGSLIYKPPSHYTHRIPAIIHGFARRFWQSSTDHRGTPANPGRVATLIPYEDIIRQTAFLKNVNLYSESAPIQDPDDLVTIGVVYYI--PPEHAQEVREYLNVREQNGYTLHEVEVHLETNREHEAELGEALEQLPRHNKSGKRVLLTSVYIGTIDNEAFVGPETVDETAKVIAVSHGPSGSNYEYLAKLEQAL 204          
BLAST of EY665129 vs. ExPASy Swiss-Prot
Match: CHAC_ECOLI (Cation transport protein chaC OS=Escherichia coli (strain K12) GN=chaC PE=3 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 2.381e-12
Identity = 53/165 (32.12%), Postives = 72/165 (43.64%), Query Frame = 3
Query:  171 WVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERRECEYDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLENAMFDIGHDD 665
            W+FGYGSL+WNP  E+ E   G +  + R F L     RGT   P R   L++   T   GVAY +   PE E L  E     + E  +   +  + + +         IVF   P    +  Y      + +A  IA A GP G N  YLF LE  +  +G  D
Sbjct:   48 WIFGYGSLMWNPALEFTESCTGTLVGWHRAFCLRLTAGRGTAHQPGRMLALKEGGRTT--GVAYRL---PE-ETLEQELTLLWKREMITGCYLPTWCQLDLDDGRTVNAIVFIMDP---RHPEYESDTRAQVIAPLIAAASGPLGTNAQYLFSLEQELIKLGMQD 203          
The following BLAST results are available for this feature:
BLAST of EY665129 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
CHAC_SCHPO1.349e-1532.82Cation transport regulator-like protein OS=Schizos... [more]
CHAC_YEAST1.396e-1227.78Cation transport regulator-like protein OS=Sacchar... [more]
CHAC_ECOLI2.381e-1232.12Cation transport protein chaC OS=Escherichia coli ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-074-D03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665129 ID=EY665129; Name=EY665129; organism=Citrus sinensis; type=EST; length=914bp
CAATTGCACCCACACGAGAGACGGGGAGAGAGAGAGAGAGAGAGAGGAAG
CGAAGAGAAATAGAAAGAGAGAATACAGAATCCTAACCTTAGACGTTTTA
GCTTGTTTCGTTTCCCTCTTTTGCTTCAAGTTTCTTCCTTTCTCTCGCGA
TTTCCTTGAAAATGGTGTTCTGGGTTTTTGGGTATGGATCATTGGTGTGG
AACCCAGGGTTTGAATATGATGAGAAAATTTTAGGCTTCATCAAGGACTA
CAGGCGCGTGTTTGATCTTGCATGCATTGATCACAGGGGTACACCTCAAC
ACCCGGCTAGAACTTGCACGCTGGAAAAATCTCAAGAAACCATTTGTTGG
GGTGTTGCTTATTGTGTCCGAGGAGGTCCTGAAAAGGAAAGACTCGCTAT
GGAGTATTTGGAACGAAGAGAATGCGAGTACGACTCTAAGACCCTTGTAG
ACTTTTACAGGGAAGGGGAGCCTTCACAGCCGGCTCTAACTGGGGTTATA
GTTTTCACGTCTACTCCAGACAAAGTATCAAACAAGTATTATCTGGGGCC
TGCTCCATTGGAGGAAATGGCTAGGCAAATTGCAACGGCTGTCGGACCCT
GTGGAAACAATAGAGACTACCTTTTCAAGTTGGAGAATGCCATGTTTGAT
ATTGGTCATGATGACCGACTACATATAGAGCTGGGCAATGAAGTGAGGAA
AGAGCTGGNNACTGCTGAAAAAGGATTCTCAAGGAGAGGAGTTGGTTGGG
TCATCATNCCGCATGCCGCTCACATATCTCATATTCCAACCCTTCACTGG
GTCTACGCCCTGAGGCGGTGCCATGGATNCATANAATCACAAGCTGACAG
ACACATAGGGCCTAGGGACTTATCAAGATATCAGCACGTAGCTAACACAT
CGCCTCATCTTGTT
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