CX043449

Overview
NameCX043449
Unique NameCX043449
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length753
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX043449 vs. ExPASy Swiss-Prot
Match: DNAK_SODGM (Chaperone protein dnaK OS=Sodalis glossinidius (strain morsitans) GN=dnaK PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.299e-11
Identity = 36/96 (37.50%), Postives = 58/96 (60.42%), Query Frame = 3 
Query:    6 ILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPTFKVREFQVNESFPFSISLSWKG 293
            ++ R   PL+ AL + GLSV D+  V +VG  +R+P + K +T+FFGKEPR+ +N  E VA G A+Q  +L+    V++  + +  P S+ +   G
Sbjct:  312 LVNRTLEPLKVALKDAGLSVSDIKDVILVGGQTRMPLVQKKVTDFFGKEPRKDVNPDEAVAIGAAVQGGVLAG--DVKDVLLLDVTPLSLGIETMG 405
[Close]
BLAST of CX043449 vs. ExPASy Swiss-Prot
Match: DNAK_SHESH (Chaperone protein dnaK OS=Shewanella sediminis (strain HAW-EB3) GN=dnaK PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.299e-11
Identity = 47/191 (24.61%), Postives = 88/191 (46.07%), Query Frame = 3 
Query:    6 ILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPTFKVREFQVNESFPFSISLSWKGSAPEAQNETGDNQQSTTVFPKGNPIPSVKALTFY----RSGTFTVDVQYADVSELRAPAKISTYTIGPFQSTKSERAKVKVKVRLNMHGIVSIES 566
            ++ R   PL+ ALA+  LSV D++ V +VG  +R+P +   ++EFFGKE R+ +N  E VA G A+Q  +LS    V++  + +  P S+ +   GS              T +  K   IP+  + TF          T+ V   +  +      +  + +   ++      +++V   ++  GI+ + +
Sbjct:  311 LITRTLEPLKVALADADLSVSDINEVILVGGQTRMPKVRTEVSEFFGKELRQDVNPDEAVAIGAAVQAGVLSG--DVKDVLLLDVTPLSLGIETMGSV------------MTKLIEKNTTIPTKASQTFSTADDNQSAVTIHVLQGERKQSSGNKSLGQFNLEGIEAAPRGMPQIEVAFDIDADGILHVSA 487
[Close]
BLAST of CX043449 vs. ExPASy Swiss-Prot
Match: DNAK_SALTY (Chaperone protein dnaK OS=Salmonella typhimurium GN=dnaK PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 7.299e-11
Identity = 37/96 (38.54%), Postives = 58/96 (60.42%), Query Frame = 3 
Query:    6 ILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPTFKVREFQVNESFPFSISLSWKG 293
            ++ R   PL+ AL + GLSV D++ V +VG  +R+P + K + EFFGKEPR+ +N  E VA G A+Q  +L  T  V++  + +  P S+ +   G
Sbjct:  312 LVNRSIEPLKVALQDAGLSVSDINDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVL--TGDVKDVLLLDVTPLSLGIETMG 405
[Close]
BLAST of CX043449 vs. ExPASy Swiss-Prot
Match: DNAK_SALTI (Chaperone protein dnaK OS=Salmonella typhi GN=dnaK PE=2 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 7.299e-11
Identity = 37/96 (38.54%), Postives = 58/96 (60.42%), Query Frame = 3 
Query:    6 ILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPTFKVREFQVNESFPFSISLSWKG 293
            ++ R   PL+ AL + GLSV D++ V +VG  +R+P + K + EFFGKEPR+ +N  E VA G A+Q  +L  T  V++  + +  P S+ +   G
Sbjct:  312 LVNRSIEPLKVALQDAGLSVSDINDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVL--TGDVKDVLLLDVTPLSLGIETMG 405
[Close]
BLAST of CX043449 vs. ExPASy Swiss-Prot
Match: DNAK_SALSV (Chaperone protein dnaK OS=Salmonella schwarzengrund (strain CVM19633) GN=dnaK PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.299e-11
Identity = 37/96 (38.54%), Postives = 58/96 (60.42%), Query Frame = 3 
Query:    6 ILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPTFKVREFQVNESFPFSISLSWKG 293
            ++ R   PL+ AL + GLSV D++ V +VG  +R+P + K + EFFGKEPR+ +N  E VA G A+Q  +L  T  V++  + +  P S+ +   G
Sbjct:  312 LVNRSIEPLKVALQDAGLSVSDINDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVL--TGDVKDVLLLDVTPLSLGIETMG 405
[Close]
BLAST of CX043449 vs. ExPASy Swiss-Prot
Match: DNAK_SALPK (Chaperone protein dnaK OS=Salmonella paratyphi A (strain AKU_12601) GN=dnaK PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.299e-11
Identity = 37/96 (38.54%), Postives = 58/96 (60.42%), Query Frame = 3 
Query:    6 ILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPTFKVREFQVNESFPFSISLSWKG 293
            ++ R   PL+ AL + GLSV D++ V +VG  +R+P + K + EFFGKEPR+ +N  E VA G A+Q  +L  T  V++  + +  P S+ +   G
Sbjct:  312 LVNRSIEPLKVALQDAGLSVSDINDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVL--TGDVKDVLLLDVTPLSLGIETMG 405
[Close]
BLAST of CX043449 vs. ExPASy Swiss-Prot
Match: DNAK_SALPC (Chaperone protein dnaK OS=Salmonella paratyphi C (strain RKS4594) GN=dnaK PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.299e-11
Identity = 37/96 (38.54%), Postives = 58/96 (60.42%), Query Frame = 3 
Query:    6 ILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPTFKVREFQVNESFPFSISLSWKG 293
            ++ R   PL+ AL + GLSV D++ V +VG  +R+P + K + EFFGKEPR+ +N  E VA G A+Q  +L  T  V++  + +  P S+ +   G
Sbjct:  312 LVNRSIEPLKVALQDAGLSVSDINDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVL--TGDVKDVLLLDVTPLSLGIETMG 405
[Close]
BLAST of CX043449 vs. ExPASy Swiss-Prot
Match: DNAK_SALPB (Chaperone protein dnaK OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=dnaK PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.299e-11
Identity = 37/96 (38.54%), Postives = 58/96 (60.42%), Query Frame = 3 
Query:    6 ILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPTFKVREFQVNESFPFSISLSWKG 293
            ++ R   PL+ AL + GLSV D++ V +VG  +R+P + K + EFFGKEPR+ +N  E VA G A+Q  +L  T  V++  + +  P S+ +   G
Sbjct:  312 LVNRSIEPLKVALQDAGLSVSDINDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVL--TGDVKDVLLLDVTPLSLGIETMG 405
[Close]
BLAST of CX043449 vs. ExPASy Swiss-Prot
Match: DNAK_SALPA (Chaperone protein dnaK OS=Salmonella paratyphi A GN=dnaK PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.299e-11
Identity = 37/96 (38.54%), Postives = 58/96 (60.42%), Query Frame = 3 
Query:    6 ILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPTFKVREFQVNESFPFSISLSWKG 293
            ++ R   PL+ AL + GLSV D++ V +VG  +R+P + K + EFFGKEPR+ +N  E VA G A+Q  +L  T  V++  + +  P S+ +   G
Sbjct:  312 LVNRSIEPLKVALQDAGLSVSDINDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVL--TGDVKDVLLLDVTPLSLGIETMG 405
[Close]
BLAST of CX043449 vs. ExPASy Swiss-Prot
Match: DNAK_SALNS (Chaperone protein dnaK OS=Salmonella newport (strain SL254) GN=dnaK PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.299e-11
Identity = 37/96 (38.54%), Postives = 58/96 (60.42%), Query Frame = 3 
Query:    6 ILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPTFKVREFQVNESFPFSISLSWKG 293
            ++ R   PL+ AL + GLSV D++ V +VG  +R+P + K + EFFGKEPR+ +N  E VA G A+Q  +L  T  V++  + +  P S+ +   G
Sbjct:  312 LVNRSIEPLKVALQDAGLSVSDINDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVL--TGDVKDVLLLDVTPLSLGIETMG 405
The following BLAST results are available for this feature:
BLAST of CX043449 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 261
Match NameE-valueIdentityDescription
DNAK_SODGM7.299e-1137.50Chaperone protein dnaK OS=Sodalis glossinidius (st... [more]
DNAK_SHESH7.299e-1124.61Chaperone protein dnaK OS=Shewanella sediminis (st... [more]
DNAK_SALTY7.299e-1138.54Chaperone protein dnaK OS=Salmonella typhimurium G... [more]
DNAK_SALTI7.299e-1138.54Chaperone protein dnaK OS=Salmonella typhi GN=dnaK... [more]
DNAK_SALSV7.299e-1138.54Chaperone protein dnaK OS=Salmonella schwarzengrun... [more]
DNAK_SALPK7.299e-1138.54Chaperone protein dnaK OS=Salmonella paratyphi A (... [more]
DNAK_SALPC7.299e-1138.54Chaperone protein dnaK OS=Salmonella paratyphi C (... [more]
DNAK_SALPB7.299e-1138.54Chaperone protein dnaK OS=Salmonella paratyphi B (... [more]
DNAK_SALPA7.299e-1138.54Chaperone protein dnaK OS=Salmonella paratyphi A G... [more]
DNAK_SALNS7.299e-1138.54Chaperone protein dnaK OS=Salmonella newport (stra... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_11B05_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-11B05-C9-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043449 ID=CX043449; Name=CX043449; organism=Citrus sinensis; type=EST; length=753bp
CTCCAATCCTGGAACGTGTAAAGAGGCCTTTGGAAAAGGCTCTTGCTGAA
ACCGGGCTTTCAGTTGAGGATGTTCACATGGTTGAGGTTGTTGGCTCTTC
ATCTCGGGTTCCTGCAATAATTAAGATACTCACTGAATTCTTTGGAAAAG
AACCCAGGCGTACAATGAATGCAAGTGAGTGTGTAGCCAGAGGATGCGCT
TTACAATGTGCGATTCTTAGTCCTACTTTCAAAGTGCGGGAGTTTCAGGT
CAATGAGAGTTTCCCATTTTCAATTTCTTTGTCATGGAAAGGCTCTGCTC
CAGAAGCTCAAAATGAAACAGGGGACAATCAGCAAAGCACTACTGTGTTC
CCCAAGGGAAATCCAATACCTAGTGTGAAGGCTCTGACATTTTACAGGTC
AGGTACATTCACTGTTGATGTGCAGTATGCTGATGTGAGTGAATTGCGGG
CACCTGCCAAAATCAGTACTTACACGATCGGTCCTTTCCAATCTACAAAA
AGTGAACGGGCCAAAGTGAAAGTCAAAGTTCGCTTGAATATGCATGGGAT
TGTGTCTATTGAGTCAGCAACACTCTTGGAGGAAGAGGAAGTTGAAGTTC
CAGTTACGAAGGAGCCTGAAAAAGAAGCCGCTAAGATGGAAACTGATGAG
GTTCCCAGTGATACTGCTCCCCCTAGTTCCAGTGAGACTGATGTAAACAT
GCAAGATGCTAANGGTACTGCTGATGCTCAGGGAACCACTGATGCTCCGG
GGG
back to top