EY665120

Overview
NameEY665120
Unique NameEY665120
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length586
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2799 contig Csv1_Contig2799:224..809. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY665120 vs. ExPASy Swiss-Prot
Match: IF5A1_CHICK (Eukaryotic translation initiation factor 5A-1 OS=Gallus gallus GN=EIF5A1 PE=1 SV=3)

HSP 1 Score: 97.4413 bits (241), Expect = 5.380e-20
Identity = 47/87 (54.02%), Postives = 66/87 (75.86%), Query Frame = 1
Query:   16 KHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLV 276
            KHGHAK H VGIDIF+GKK EDI PS+HN DVP++ R D+QLI I +DGF+SLL ++G  ++DLRLP  E L  +++  +  G++++
Sbjct:   50 KHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRCDFQLIGI-QDGFLSLLQDSGEVREDLRLPEGE-LGREIEQKYDCGEEII 134          
BLAST of EY665120 vs. ExPASy Swiss-Prot
Match: IF5A2_CAEEL (Eukaryotic translation initiation factor 5A-2 OS=Caenorhabditis elegans GN=iff-2 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.731e-18
Identity = 54/105 (51.43%), Postives = 71/105 (67.62%), Query Frame = 1
Query:   16 KHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLL-TENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLT-VMSSMGEEQICALK 324
            KHGHAK H V IDIF+ KKLEDI PS+HN DVP V R +Y L+ I +DG+ SL+  E+   KDDL+LP D  L  Q++D + + +  VL  V+S++GEE I   K
Sbjct:   54 KHGHAKVHMVAIDIFTSKKLEDICPSTHNMDVPVVKRREYLLMAI-DDGYCSLMDPESCEQKDDLKLP-DTELGQQIRDAYEKDEGSVLVQVVSAIGEEAILGWK 156          
BLAST of EY665120 vs. ExPASy Swiss-Prot
Match: IF5A1_CAEEL (Eukaryotic translation initiation factor 5A-1 OS=Caenorhabditis elegans GN=iff-1 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.620e-16
Identity = 51/105 (48.57%), Postives = 68/105 (64.76%), Query Frame = 1
Query:   16 KHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLL-TENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLT-VMSSMGEEQICALK 324
            KHGHAK H V IDIF+ KKLEDI PS+HN DVP V R +Y L+ I EDGF SL+  E+   KDDL++P  + L   +++   + +  VL  V+++ GEE I   K
Sbjct:   54 KHGHAKVHMVAIDIFTTKKLEDICPSTHNMDVPVVKRREYILMSI-EDGFCSLMDPESCELKDDLKMPEGD-LGNTIREALEKDEGSVLVQVVAACGEEAILGYK 156          
The following BLAST results are available for this feature:
BLAST of EY665120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
IF5A1_CHICK5.380e-2054.02Eukaryotic translation initiation factor 5A-1 OS=G... [more]
IF5A2_CAEEL1.731e-1851.43Eukaryotic translation initiation factor 5A-2 OS=C... [more]
IF5A1_CAEEL1.620e-1648.57Eukaryotic translation initiation factor 5A-1 OS=C... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-074-C05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665120 ID=EY665120; Name=EY665120; organism=Citrus sinensis; type=EST; length=586bp
CCACGCGTCCGCTGGAAACACGGTCATGCTAAGTGCCACTTTGTTGGAAT
TGATATCTTCAGTGGAAAGAAGCTGGAAGATATTGTCCCCTCTTCTCATA
ACTGTGATGTTCCCCATGTCAACCGTACCGACTATCAGTTGATTGATATT
TCTGAGGATGGATTTGTGAGTTTGCTGACTGAAAATGGGAACACCAAGGA
TGATCTGAGGCTCCCAACCGATGAGACTCTGCTGACCCAGCTCAAGGACG
GTTTTGCTGAGGGGAAGGACTTGGTTTTGACTGTCATGTCTTCAATGGGC
GAGGAGCAGATCTGTGCCCTCAAGGATATTGGCCCAAAGTCGTAGTTGCG
CGATATGTGATTATCTTCTGTGTCTGGTTGCATCTGTTTTTTGGAAAAAT
ATTTTAATCATCTAGAGTTTGCCTTTAATATTTGTAGCGTCTTTGTTTTG
TGGTGAGAATTGCAAGCTGCCTGGAATATGTAGTTCTTTTGATTGGCGGC
TAAAAAATTTATGGTGTTCAATTTCTCTAATGAATTATAATGTTAGAAAG
AAATCGTCTTTGTTATTTAAAAAAAAAAAAAAAAAA
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