EY665116

Overview
NameEY665116
Unique NameEY665116
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY665116 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.700e-42
Identity = 82/86 (95.35%), Postives = 83/86 (96.51%), Query Frame = 3 
Query:    3 PLGEVTDPLYPRGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVHAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 260
            PLGEV DPLYP GSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFV AIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  180 PLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
[Close]
BLAST of EY665116 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 3.526e-42
Identity = 80/86 (93.02%), Postives = 84/86 (97.67%), Query Frame = 3 
Query:    3 PLGEVTDPLYPRGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVHAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 260
            PLGEVTDP+YP G+FDPLGLADDP+AFAELKVKEIKNGRLAMFSMFGFFV AIVTGKGP+ENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  193 PLGEVTDPIYPGGNFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 278
[Close]
BLAST of EY665116 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 3.526e-42
Identity = 82/86 (95.35%), Postives = 83/86 (96.51%), Query Frame = 3 
Query:    3 PLGEVTDPLYPRGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVHAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 260
            PLGEV DPLYP GSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV AIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  181 PLGEVIDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266
[Close]
BLAST of EY665116 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 3.526e-42
Identity = 81/86 (94.19%), Postives = 83/86 (96.51%), Query Frame = 3 
Query:    3 PLGEVTDPLYPRGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVHAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 260
            PLGEV DPLYP GSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFV AIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  184 PLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 269
[Close]
BLAST of EY665116 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 4.605e-42
Identity = 81/86 (94.19%), Postives = 83/86 (96.51%), Query Frame = 3 
Query:    3 PLGEVTDPLYPRGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVHAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 260
            PLGEVTDP+YP GSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFV AIVTGKGPLENLADHLA PVNNNAWAYATNFVPGK
Sbjct:  178 PLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAGPVNNNAWAYATNFVPGK 263
[Close]
BLAST of EY665116 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 6.015e-42
Identity = 81/86 (94.19%), Postives = 83/86 (96.51%), Query Frame = 3 
Query:    3 PLGEVTDPLYPRGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVHAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 260
            PLGEV DPLYP GSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFV AIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:   31 PLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 116
[Close]
BLAST of EY665116 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 6.015e-42
Identity = 81/86 (94.19%), Postives = 83/86 (96.51%), Query Frame = 3 
Query:    3 PLGEVTDPLYPRGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVHAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 260
            PLGEV DPLYP GSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFV AIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  181 PLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 266
[Close]
BLAST of EY665116 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 6.015e-42
Identity = 81/86 (94.19%), Postives = 83/86 (96.51%), Query Frame = 3 
Query:    3 PLGEVTDPLYPRGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVHAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 260
            PLGEVTDP+YP GSFDPL LADDPEAFAELKVKEIKNGRLAMFSMFGFFV AIVTGKGPLENLADHLA+PVNNNAWAYATNFVPGK
Sbjct:  160 PLGEVTDPIYPGGSFDPLALADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAEPVNNNAWAYATNFVPGK 245
[Close]
BLAST of EY665116 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 7.856e-42
Identity = 81/86 (94.19%), Postives = 83/86 (96.51%), Query Frame = 3 
Query:    3 PLGEVTDPLYPRGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVHAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 260
            PLGEV DPLYP GSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFV AIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  180 PLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265
[Close]
BLAST of EY665116 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 7.856e-42
Identity = 81/86 (94.19%), Postives = 83/86 (96.51%), Query Frame = 3 
Query:    3 PLGEVTDPLYPRGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVHAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 260
            PLGEV DPLYP GSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFV AIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  180 PLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265
The following BLAST results are available for this feature:
BLAST of EY665116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
CB22_TOBAC2.700e-4295.35Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB2A_PINSY3.526e-4293.02Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB24_PETSP3.526e-4295.35Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB22_PEA3.526e-4294.19Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB23_SOYBN4.605e-4294.19Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB2D_SOLLC6.015e-4294.19Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB21_TOBAC6.015e-4294.19Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB21_SOYBN6.015e-4294.19Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB2C_SOLLC7.856e-4294.19Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2B_SOLLC7.856e-4294.19Chlorophyll a-b binding protein 1B, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-074-C01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665116 ID=EY665116; Name=EY665116; organism=Citrus sinensis; type=EST; length=879bp
GGCCGCTCGGTGAAGTGACTGACCCATTGTACCCACGTGGCAGCTTTGAT
CCATTGGGTTTGGCTGATGACCCGGAGGCTTTTGCTGAGCTCAAGGTTAA
GGAAATCAAGAATGGAAGGTTGGCTATGTTCTCCATGTTTGGTTTCTTCG
TTCATGCCATTGTCACCGGCAAGGGACCGTTAGAGAACTTGGCCGACCAC
TTGGCTGACCCTGTCAATAACAATGCCTGGGCCTACGCCACCAACTTTGT
CCCCGGAAAGTGAGCTTCGGTTGATAAGAGTTTTTCTCTTTTCGGTTTCT
TGGATATCATGTAAATCTGTTGTGAGCTCATGGAAGCTTTAATTTGAGTT
GTGATTATTTATAAAATGCTTCAATTTGATCTAAAATAAAAATATTNATA
AAAAAAATTNACAAAAATTATAATAAAAAGAAAAATTGCGGTCCAAAATT
CAAAATTAACTATCCCTTTTCCTTCTTTCTTTTTTTATAATATAGGGGGG
GGCCCCTTTAAAGGACACAAGTTACGACGCGGGCTGCAAAGATTTCCTTT
TTTTTGGGTCCCCAAATTATATTCCTGGGCCTTTTTTAAAACGCGGGCAT
GGGAAAACCCTGGCGTCCCCTTTTAATTCCTTTGAAAAATTCCCTTTTTC
CCATTGGGTTTAACAAAAAGGCCCCCCGTTTCCCTTCCCAATTTGCCCCC
CTTAATGGAATTGGGCCCCCCTTTACGGCCATATACGCGGGGGGGGGGGG
TGTCCCTCAAGGAACCTACATTGCCAGGCCTACCCCCCCCTTTTGTTTTT
TCCTTTTTCTCGAACCTTTGCGGGTCCCCCGAAACTTAAATGGGGCCCTC
TAGGGTCCATTATGTTTAAGGCCCCCACC
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