EY665116

Overview
NameEY665116
Unique NameEY665116
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665116 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 7.856e-42
Identity = 81/86 (94.19%), Postives = 83/86 (96.51%), Query Frame = 3
Query:    3 PLGEVTDPLYPRGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVHAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 260
            PLGEV DPLYP GSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFV AIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  180 PLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265          
BLAST of EY665116 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 7.856e-42
Identity = 80/86 (93.02%), Postives = 83/86 (96.51%), Query Frame = 3
Query:    3 PLGEVTDPLYPRGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVHAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 260
            PLGEV DPLYP GSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFV AIVTGKGPLENLADHL+DPVNNNAW+YATNFVPGK
Sbjct:  183 PLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNAWSYATNFVPGK 268          
BLAST of EY665116 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 7.856e-42
Identity = 81/86 (94.19%), Postives = 83/86 (96.51%), Query Frame = 3
Query:    3 PLGEVTDPLYPRGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVHAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 260
            PLGEV DPLYP GSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFV AIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  182 PLGEVIDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267          
BLAST of EY665116 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 1.026e-41
Identity = 80/86 (93.02%), Postives = 83/86 (96.51%), Query Frame = 3
Query:    3 PLGEVTDPLYPRGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVHAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 260
            PLGEV DPLYP GSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFV A+VTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  181 PLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQALVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 266          
BLAST of EY665116 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 1.026e-41
Identity = 81/86 (94.19%), Postives = 83/86 (96.51%), Query Frame = 3
Query:    3 PLGEVTDPLYPRGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVHAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 260
            PLGEV DPLYP GSFDPLGLADDPEAFAEL+VKEIKNGRLAMFSMFGFFV AIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  181 PLGEVIDPLYPGGSFDPLGLADDPEAFAELEVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266          
BLAST of EY665116 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 1.026e-41
Identity = 80/85 (94.12%), Postives = 82/85 (96.47%), Query Frame = 3
Query:    3 PLGEVTDPLYPRGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVHAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 257
            PLGEV DPLYP GSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFV AIVTGKGPLENLADH+ADPVNNNAWAYATNFVPG
Sbjct:  177 PLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAYATNFVPG 261          
BLAST of EY665116 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.340e-41
Identity = 80/86 (93.02%), Postives = 83/86 (96.51%), Query Frame = 3
Query:    3 PLGEVTDPLYPRGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVHAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 260
            PLGEV DPLYP GSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFV AIVTGKGPLENLADH+ADPVNNNAWA+ATNFVPGK
Sbjct:  182 PLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267          
BLAST of EY665116 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.340e-41
Identity = 80/86 (93.02%), Postives = 83/86 (96.51%), Query Frame = 3
Query:    3 PLGEVTDPLYPRGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVHAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 260
            PLGEV DPLYP GSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFV AIVTGKGPLENLADH+ADPVNNNAWA+ATNFVPGK
Sbjct:  182 PLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267          
BLAST of EY665116 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.340e-41
Identity = 81/86 (94.19%), Postives = 82/86 (95.35%), Query Frame = 3
Query:    3 PLGEVTDPLYPRGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVHAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 260
            PLGEV DPLYP GSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV AIVTGKGPLENLADHLADPVNNNAW +ATNFVPGK
Sbjct:  182 PLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWNFATNFVPGK 267          
BLAST of EY665116 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.750e-41
Identity = 78/86 (90.70%), Postives = 84/86 (97.67%), Query Frame = 3
Query:    3 PLGEVTDPLYPRGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVHAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 260
            PLGEVTDP+YP G+FDPLGLADDP+AFA++KVKEIKNGRLAMFSMFGFFV AIVTGKGP+ENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  193 PLGEVTDPIYPGGNFDPLGLADDPDAFADVKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 278          
The following BLAST results are available for this feature:
BLAST of EY665116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
CB2A_SOLLC7.856e-4294.19Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB28_PEA7.856e-4293.02Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_PETSP7.856e-4294.19Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB25_NICPL1.026e-4193.02Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB21_PETSP1.026e-4194.19Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB21_MAIZE1.026e-4194.12Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB2F_SOLLC1.340e-4193.02Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC1.340e-4193.02Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB2A_SPIOL1.340e-4194.19Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2A_PYRPY1.750e-4190.70Chlorophyll a-b binding protein 1A, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-074-C01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665116 ID=EY665116; Name=EY665116; organism=Citrus sinensis; type=EST; length=879bp
GGCCGCTCGGTGAAGTGACTGACCCATTGTACCCACGTGGCAGCTTTGAT
CCATTGGGTTTGGCTGATGACCCGGAGGCTTTTGCTGAGCTCAAGGTTAA
GGAAATCAAGAATGGAAGGTTGGCTATGTTCTCCATGTTTGGTTTCTTCG
TTCATGCCATTGTCACCGGCAAGGGACCGTTAGAGAACTTGGCCGACCAC
TTGGCTGACCCTGTCAATAACAATGCCTGGGCCTACGCCACCAACTTTGT
CCCCGGAAAGTGAGCTTCGGTTGATAAGAGTTTTTCTCTTTTCGGTTTCT
TGGATATCATGTAAATCTGTTGTGAGCTCATGGAAGCTTTAATTTGAGTT
GTGATTATTTATAAAATGCTTCAATTTGATCTAAAATAAAAATATTNATA
AAAAAAATTNACAAAAATTATAATAAAAAGAAAAATTGCGGTCCAAAATT
CAAAATTAACTATCCCTTTTCCTTCTTTCTTTTTTTATAATATAGGGGGG
GGCCCCTTTAAAGGACACAAGTTACGACGCGGGCTGCAAAGATTTCCTTT
TTTTTGGGTCCCCAAATTATATTCCTGGGCCTTTTTTAAAACGCGGGCAT
GGGAAAACCCTGGCGTCCCCTTTTAATTCCTTTGAAAAATTCCCTTTTTC
CCATTGGGTTTAACAAAAAGGCCCCCCGTTTCCCTTCCCAATTTGCCCCC
CTTAATGGAATTGGGCCCCCCTTTACGGCCATATACGCGGGGGGGGGGGG
TGTCCCTCAAGGAACCTACATTGCCAGGCCTACCCCCCCCTTTTGTTTTT
TCCTTTTTCTCGAACCTTTGCGGGTCCCCCGAAACTTAAATGGGGCCCTC
TAGGGTCCATTATGTTTAAGGCCCCCACC
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