EY665116

Overview
NameEY665116
Unique NameEY665116
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665116 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.794e-39
Identity = 77/86 (89.53%), Postives = 80/86 (93.02%), Query Frame = 3
Query:    3 PLGEVTDPLYPRGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVHAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 260
            PLGE  D LYP GSFDPLGLA DPEAFAELKVKE+KNGRLAMFSMFGFFV AIVTGKGP+ENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  182 PLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK 267          
BLAST of EY665116 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.794e-39
Identity = 77/86 (89.53%), Postives = 80/86 (93.02%), Query Frame = 3
Query:    3 PLGEVTDPLYPRGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVHAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 260
            PLGE  D LYP GSFDPLGLA DPEAFAELKVKE+KNGRLAMFSMFGFFV AIVTGKGP+ENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  182 PLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK 267          
BLAST of EY665116 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 4.766e-39
Identity = 77/85 (90.59%), Postives = 78/85 (91.76%), Query Frame = 3
Query:    6 LGEVTDPLYPRGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVHAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 260
            LGEV DPLY  GSFDPLGL DDPE FAELKVKEIKNGRLAMFSMFGFFV AIVTGKGP+ENLADHL DPVNNNAWAYATNFVPGK
Sbjct:  180 LGEVVDPLYLGGSFDPLGLGDDPERFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLTDPVNNNAWAYATNFVPGK 264          
BLAST of EY665116 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 4.766e-39
Identity = 76/86 (88.37%), Postives = 79/86 (91.86%), Query Frame = 3
Query:    3 PLGEVTDPLYPRGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVHAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 260
            PLG V DPLYP GSFDPLGLA+DPEAFAELKVKE KNGRLAMFSMFGFF+ AIVTGKGPLENLADHL DPVNNNAW+YATNFVP K
Sbjct:  182 PLGVVVDPLYPGGSFDPLGLAEDPEAFAELKVKETKNGRLAMFSMFGFFIQAIVTGKGPLENLADHLVDPVNNNAWSYATNFVPRK 267          
BLAST of EY665116 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 4.766e-39
Identity = 76/86 (88.37%), Postives = 80/86 (93.02%), Query Frame = 3
Query:    3 PLGEVTDPLYPRGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVHAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 260
            PLGE  DP+YP G+FDPLGLADDP+AFAELKVKEIKNGRLAMFSMFGFFV AIVTGKGP+ENL DHLADPV NNAWAYATNFVPGK
Sbjct:  180 PLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANNAWAYATNFVPGK 265          
BLAST of EY665116 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.387e-38
Identity = 75/86 (87.21%), Postives = 80/86 (93.02%), Query Frame = 3
Query:    3 PLGEVTDPLYPRGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVHAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 260
            PLGE  D +YP G+FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV AIVTGKGP+ENL+DH+ADPV NNAWAYATNFVPGK
Sbjct:  152 PLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHIADPVANNAWAYATNFVPGK 237          
BLAST of EY665116 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.387e-38
Identity = 75/86 (87.21%), Postives = 80/86 (93.02%), Query Frame = 3
Query:    3 PLGEVTDPLYPRGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVHAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 260
            PLGE+ DPLYP GSFDPLGLA+ P+AFAELKVKEIKNGRLAMFSMFGFFV AIVTGKGPLE+LADH+ADPVNNNAW  ATNFVPGK
Sbjct:  181 PLGEIVDPLYPGGSFDPLGLAERPQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEDLADHIADPVNNNAWLIATNFVPGK 266          
BLAST of EY665116 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 4.035e-38
Identity = 75/86 (87.21%), Postives = 79/86 (91.86%), Query Frame = 3
Query:    3 PLGEVTDPLYPRGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVHAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 260
            PLGE  D +YP G+FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV AIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  180 PLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 265          
BLAST of EY665116 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 6.882e-38
Identity = 74/86 (86.05%), Postives = 79/86 (91.86%), Query Frame = 3
Query:    3 PLGEVTDPLYPRGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVHAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 260
            PLGE  D +YP G+FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV AIVTGKGP+ENL+DH+ DPV NNAWAYATNFVPGK
Sbjct:  180 PLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHINDPVANNAWAYATNFVPGK 265          
BLAST of EY665116 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 8.988e-38
Identity = 76/86 (88.37%), Postives = 78/86 (90.70%), Query Frame = 3
Query:    3 PLGEVTDPLYPRGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVHAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 260
            PLGE  DPLYP  +FDPLGLADDPEA AELKVKEIKNGRLAMFSMFGFFV AIVTGKGP+ENL DHLADPV NNAWAYATNFVPGK
Sbjct:   65 PLGEGLDPLYPGDAFDPLGLADDPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 150          
The following BLAST results are available for this feature:
BLAST of EY665116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
CB22_ARATH2.794e-3989.53Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ARATH2.794e-3989.53Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB48_MAIZE4.766e-3990.59Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB22_PETSP4.766e-3988.37Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB21_GOSHI4.766e-3988.37Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB25_SOLLC1.387e-3887.21Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB21_WHEAT1.387e-3887.21Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_TOBAC4.035e-3887.21Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB24_SOLLC6.882e-3886.05Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB22_PINSY8.988e-3888.37Chlorophyll a-b binding protein type 2 member 2 (F... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-074-C01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665116 ID=EY665116; Name=EY665116; organism=Citrus sinensis; type=EST; length=879bp
GGCCGCTCGGTGAAGTGACTGACCCATTGTACCCACGTGGCAGCTTTGAT
CCATTGGGTTTGGCTGATGACCCGGAGGCTTTTGCTGAGCTCAAGGTTAA
GGAAATCAAGAATGGAAGGTTGGCTATGTTCTCCATGTTTGGTTTCTTCG
TTCATGCCATTGTCACCGGCAAGGGACCGTTAGAGAACTTGGCCGACCAC
TTGGCTGACCCTGTCAATAACAATGCCTGGGCCTACGCCACCAACTTTGT
CCCCGGAAAGTGAGCTTCGGTTGATAAGAGTTTTTCTCTTTTCGGTTTCT
TGGATATCATGTAAATCTGTTGTGAGCTCATGGAAGCTTTAATTTGAGTT
GTGATTATTTATAAAATGCTTCAATTTGATCTAAAATAAAAATATTNATA
AAAAAAATTNACAAAAATTATAATAAAAAGAAAAATTGCGGTCCAAAATT
CAAAATTAACTATCCCTTTTCCTTCTTTCTTTTTTTATAATATAGGGGGG
GGCCCCTTTAAAGGACACAAGTTACGACGCGGGCTGCAAAGATTTCCTTT
TTTTTGGGTCCCCAAATTATATTCCTGGGCCTTTTTTAAAACGCGGGCAT
GGGAAAACCCTGGCGTCCCCTTTTAATTCCTTTGAAAAATTCCCTTTTTC
CCATTGGGTTTAACAAAAAGGCCCCCCGTTTCCCTTCCCAATTTGCCCCC
CTTAATGGAATTGGGCCCCCCTTTACGGCCATATACGCGGGGGGGGGGGG
TGTCCCTCAAGGAACCTACATTGCCAGGCCTACCCCCCCCTTTTGTTTTT
TCCTTTTTCTCGAACCTTTGCGGGTCCCCCGAAACTTAAATGGGGCCCTC
TAGGGTCCATTATGTTTAAGGCCCCCACC
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