EY665116

Overview
NameEY665116
Unique NameEY665116
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665116 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.777e-31
Identity = 69/85 (81.18%), Postives = 71/85 (83.53%), Query Frame = 3
Query:    6 LGEVTDPLYPRGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVHAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 257
            +GE  D LYP G  FDPLGLADDP  FAELKVKEIKNGRLAMFSMFGFFV AIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct:  181 VGEGND-LYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFVPG 264          
BLAST of EY665116 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.815e-30
Identity = 68/85 (80.00%), Postives = 70/85 (82.35%), Query Frame = 3
Query:    6 LGEVTDPLYPRGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVHAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 257
            +GE  D LYP G  FDPLGLADDP  FAELKVKEIKNGRLAMFSMFGFFV AIVTGKGPLENL DHL DPV NNAW +AT F PG
Sbjct:  184 VGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPVANNAWVFATKFAPG 267          
BLAST of EY665116 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 6.898e-30
Identity = 68/85 (80.00%), Postives = 72/85 (84.71%), Query Frame = 3
Query:    3 PLGEVTDPLYPRGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVHAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 257
            PLGEVTDPLYP GSFD LGLA+D EAFAELKVKE+KNGRLAMFSMFGFFV AIV+ K  LENLADHL   VNNNA +  TNFVPG
Sbjct:  184 PLGEVTDPLYP-GSFDSLGLAEDTEAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENLADHLGWTVNNNALSNVTNFVPG 267          
BLAST of EY665116 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 9.961e-29
Identity = 61/79 (77.22%), Postives = 65/79 (82.28%), Query Frame = 3
Query:   21 DPLYPRGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVHAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 257
            D LYP G FDPLGLADDP+ FAELKVKEIKNGRLAMFS  GFFV AIVTGKGP++NL DHLADP  N A+A AT F PG
Sbjct:  174 DTLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVNKAFASATKFTPG 252          
BLAST of EY665116 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.914e-22
Identity = 53/83 (63.86%), Postives = 58/83 (69.88%), Query Frame = 3
Query:    9 GEVTDPLYPRGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVHAIVTGKGPLENLADHLADP-VNNNAWAYATNFVP 254
            GE  D LYP G FDPLGLADDP+ F ELKVKEIKNGRLAM  M GF+  AIVTG+GP+EN   HL DP  +N   A  T F P
Sbjct:   39 GEDLDRLYPGGPFDPLGLADDPDTFPELKVKEIKNGRLAMSGMLGFYAQAIVTGEGPVENWLYHLQDPSAHNGLTALVTQFAP 121          
BLAST of EY665116 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.627e-21
Identity = 49/68 (72.06%), Postives = 55/68 (80.88%), Query Frame = 3
Query:   21 DPLYPRGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVHAIVTGKGPLENLADHLADPVNNN 224
            D L+P G FDPLGLA DPE  A LKVKEIKNGRLAMF+M GFF+ A VTG+GP+ENLA HL+DP  NN
Sbjct:  198 DKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNN 265          
BLAST of EY665116 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.344e-19
Identity = 45/74 (60.81%), Postives = 55/74 (74.32%), Query Frame = 3
Query:    6 LGEVTDPLYPRGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVHAIVTGKGPLENLADHLADPVNNN 224
            LG   DP YP G  F+PLG   D ++  ELK+KEIKNGRLAM ++ G+F+ A+VTG GP +NL DHLADPVNNN
Sbjct:  192 LGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNN 265          
BLAST of EY665116 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.746e-17
Identity = 39/69 (56.52%), Postives = 52/69 (75.36%), Query Frame = 3
Query:   21 DPLYPRGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVHAIVTGKGPLENLADHLADPVNNN 224
            +P YP G F +PLG   D ++  ELK+KE+KNGRLAM ++ G+F+  +VTG GP +NL DH+ADPVNNN
Sbjct:  199 NPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNN 267          
BLAST of EY665116 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.670e-16
Identity = 42/66 (63.64%), Postives = 48/66 (72.73%), Query Frame = 3
Query:   30 YPRGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-HAIVTGKGPLENLADHLADPVNNN 224
            YP G+FDPLG + DP  F ELK+KEIKNGRLAM +  GF V  +   G GPLENLA HLADP +NN
Sbjct:  167 YPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 232          
BLAST of EY665116 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.670e-16
Identity = 42/66 (63.64%), Postives = 49/66 (74.24%), Query Frame = 3
Query:   30 YPRGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-HAIVTGKGPLENLADHLADPVNNN 224
            YP G+FDPLG + DP  F ELKVKEIKNGRLA+ ++ GF V  +   G GPLENLA HLADP +NN
Sbjct:  168 YPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNN 233          
The following BLAST results are available for this feature:
BLAST of EY665116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
CB23_SOLLC4.777e-3181.18Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB23_HORVU1.815e-3080.00Chlorophyll a-b binding protein of LHCII type III,... [more]
CB2_MALDO6.898e-3080.00Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB2_DUNTE9.961e-2977.22Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_EUGGR6.914e-2263.86Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB26_ARATH2.627e-2172.06Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB13_SOLLC9.344e-1960.81Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_PEA8.746e-1756.52Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB121_HORVU9.670e-1663.64Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB11_SOLLC9.670e-1663.64Chlorophyll a-b binding protein 6A, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-074-C01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665116 ID=EY665116; Name=EY665116; organism=Citrus sinensis; type=EST; length=879bp
GGCCGCTCGGTGAAGTGACTGACCCATTGTACCCACGTGGCAGCTTTGAT
CCATTGGGTTTGGCTGATGACCCGGAGGCTTTTGCTGAGCTCAAGGTTAA
GGAAATCAAGAATGGAAGGTTGGCTATGTTCTCCATGTTTGGTTTCTTCG
TTCATGCCATTGTCACCGGCAAGGGACCGTTAGAGAACTTGGCCGACCAC
TTGGCTGACCCTGTCAATAACAATGCCTGGGCCTACGCCACCAACTTTGT
CCCCGGAAAGTGAGCTTCGGTTGATAAGAGTTTTTCTCTTTTCGGTTTCT
TGGATATCATGTAAATCTGTTGTGAGCTCATGGAAGCTTTAATTTGAGTT
GTGATTATTTATAAAATGCTTCAATTTGATCTAAAATAAAAATATTNATA
AAAAAAATTNACAAAAATTATAATAAAAAGAAAAATTGCGGTCCAAAATT
CAAAATTAACTATCCCTTTTCCTTCTTTCTTTTTTTATAATATAGGGGGG
GGCCCCTTTAAAGGACACAAGTTACGACGCGGGCTGCAAAGATTTCCTTT
TTTTTGGGTCCCCAAATTATATTCCTGGGCCTTTTTTAAAACGCGGGCAT
GGGAAAACCCTGGCGTCCCCTTTTAATTCCTTTGAAAAATTCCCTTTTTC
CCATTGGGTTTAACAAAAAGGCCCCCCGTTTCCCTTCCCAATTTGCCCCC
CTTAATGGAATTGGGCCCCCCTTTACGGCCATATACGCGGGGGGGGGGGG
TGTCCCTCAAGGAACCTACATTGCCAGGCCTACCCCCCCCTTTTGTTTTT
TCCTTTTTCTCGAACCTTTGCGGGTCCCCCGAAACTTAAATGGGGCCCTC
TAGGGTCCATTATGTTTAAGGCCCCCACC
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