EY665116

Overview
NameEY665116
Unique NameEY665116
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY665116 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.182e-13
Identity = 39/65 (60.00%), Postives = 47/65 (72.31%), Query Frame = 3 
Query:   27 LYPRGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVHAIVTGKGPLENLADHLADPVN 218
            LYP G F DPLGLA DPE  A+L++ EIK+ RLAM +  GF V A  TGKGPL N A HL+DP++
Sbjct:  216 LYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLH 280
[Close]
BLAST of EY665116 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.662e-13
Identity = 38/65 (58.46%), Postives = 45/65 (69.23%), Query Frame = 3 
Query:   27 LYPRGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVHAIVTGKGPLENLADHLADPVN 218
            LYP G F DPLGLA DP   A+L++ EIK+ RLAM    GF V A  TGKGPL N A HL+DP++
Sbjct:  213 LYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLH 277
[Close]
BLAST of EY665116 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.171e-11
Identity = 39/73 (53.42%), Postives = 44/73 (60.27%), Query Frame = 3 
Query:    3 PLGEVTDPLYPRGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVHAIVTGKGPLENLADHLADPVNN 221
            P GEV    YP G F+PL  A   EA    K KE+ NGRLAM +  GF V   VTGKGP ENL  HL+DP +N
Sbjct:  179 PKGEVG---YPGGIFNPLNFAPTQEA----KEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHN 244
The following BLAST results are available for this feature:
BLAST of EY665116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
CB4A_ARATH1.182e-1360.00Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB4B_ARATH7.662e-1358.46Chlorophyll a-b binding protein CP29.2, chloroplas... [more]
CB24_ARATH7.171e-1153.42Chlorophyll a-b binding protein 4, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-074-C01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665116 ID=EY665116; Name=EY665116; organism=Citrus sinensis; type=EST; length=879bp
GGCCGCTCGGTGAAGTGACTGACCCATTGTACCCACGTGGCAGCTTTGAT
CCATTGGGTTTGGCTGATGACCCGGAGGCTTTTGCTGAGCTCAAGGTTAA
GGAAATCAAGAATGGAAGGTTGGCTATGTTCTCCATGTTTGGTTTCTTCG
TTCATGCCATTGTCACCGGCAAGGGACCGTTAGAGAACTTGGCCGACCAC
TTGGCTGACCCTGTCAATAACAATGCCTGGGCCTACGCCACCAACTTTGT
CCCCGGAAAGTGAGCTTCGGTTGATAAGAGTTTTTCTCTTTTCGGTTTCT
TGGATATCATGTAAATCTGTTGTGAGCTCATGGAAGCTTTAATTTGAGTT
GTGATTATTTATAAAATGCTTCAATTTGATCTAAAATAAAAATATTNATA
AAAAAAATTNACAAAAATTATAATAAAAAGAAAAATTGCGGTCCAAAATT
CAAAATTAACTATCCCTTTTCCTTCTTTCTTTTTTTATAATATAGGGGGG
GGCCCCTTTAAAGGACACAAGTTACGACGCGGGCTGCAAAGATTTCCTTT
TTTTTGGGTCCCCAAATTATATTCCTGGGCCTTTTTTAAAACGCGGGCAT
GGGAAAACCCTGGCGTCCCCTTTTAATTCCTTTGAAAAATTCCCTTTTTC
CCATTGGGTTTAACAAAAAGGCCCCCCGTTTCCCTTCCCAATTTGCCCCC
CTTAATGGAATTGGGCCCCCCTTTACGGCCATATACGCGGGGGGGGGGGG
TGTCCCTCAAGGAACCTACATTGCCAGGCCTACCCCCCCCTTTTGTTTTT
TCCTTTTTCTCGAACCTTTGCGGGTCCCCCGAAACTTAAATGGGGCCCTC
TAGGGTCCATTATGTTTAAGGCCCCCACC
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