EY665105

Overview
NameEY665105
Unique NameEY665105
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length543
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1260 contig Csv1_Contig1260:889..1431. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY665105 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 1.435e-50
Identity = 96/123 (78.05%), Postives = 103/123 (83.74%), Query Frame = 2
Query:   11 VDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 379
            +DYLGNPNL+HAQSILAIWA QVVLMG +EGYR+                AFDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENL DHIADPVANNAWA+ATNFVPGK
Sbjct:  142 LDYLGNPNLVHAQSILAIWATQVVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHIADPVANNAWAFATNFVPGK 264          
BLAST of EY665105 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 2.447e-50
Identity = 96/123 (78.05%), Postives = 103/123 (83.74%), Query Frame = 2
Query:   11 VDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 379
            +DYLGNP+L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:   84 LDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 206          
BLAST of EY665105 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 2.447e-50
Identity = 96/123 (78.05%), Postives = 103/123 (83.74%), Query Frame = 2
Query:   11 VDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 379
            +DYLGNP+L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  133 LDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 255          
BLAST of EY665105 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 4.175e-50
Identity = 97/122 (79.51%), Postives = 102/122 (83.61%), Query Frame = 2
Query:   11 VDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPG 376
            +DYLGNP+LIHAQSILAIWACQVVLMG VEGYRI                +FDPLGLADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHIADPV NNAWAYATNFVPG
Sbjct:  140 LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAYATNFVPG 261          
BLAST of EY665105 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 9.300e-50
Identity = 94/123 (76.42%), Postives = 103/123 (83.74%), Query Frame = 2
Query:   11 VDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 379
            +DYLGNP+L+HAQSILAIWACQV+LMG VEGYRI                +FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  152 LDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 274          
BLAST of EY665105 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.215e-49
Identity = 94/123 (76.42%), Postives = 103/123 (83.74%), Query Frame = 2
Query:   11 VDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 379
            +DYLGNP+L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct:  145 LDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 267          
BLAST of EY665105 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.215e-49
Identity = 92/123 (74.80%), Postives = 103/123 (83.74%), Query Frame = 2
Query:   11 VDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 379
            +DYLGNP+L+HAQSILAIWACQVVLMG +EGYR+                +FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP++NL DH+ADPV NNAWAYATNFVPGK
Sbjct:  145 LDYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLDNLVDHLADPVNNNAWAYATNFVPGK 267          
BLAST of EY665105 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.215e-49
Identity = 93/123 (75.61%), Postives = 103/123 (83.74%), Query Frame = 2
Query:   11 VDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 379
            +DYLGNP+L+HAQSILAIWACQVVLMG VEGYR+                +FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAW+YATNFVPGK
Sbjct:  145 LDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267          
BLAST of EY665105 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.215e-49
Identity = 93/123 (75.61%), Postives = 101/123 (82.11%), Query Frame = 2
Query:   11 VDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 379
            +DYLGNP+L+HAQSILAIWACQV+LMG VEGYR+                +FDPLGLADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL DH+ADP  NNAWAYATNF PGK
Sbjct:  143 LDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVEDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPAVNNAWAYATNFTPGK 265          
BLAST of EY665105 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 1.586e-49
Identity = 94/123 (76.42%), Postives = 101/123 (82.11%), Query Frame = 2
Query:   11 VDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 379
            +DYLG+P LIHAQSILAIWACQV+LMG +EGYR+                 FDPLGLADDPD FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  156 LDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 278          
The following BLAST results are available for this feature:
BLAST of EY665105 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
CB21_LEMGI1.435e-5078.05Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_CUCSA2.447e-5078.05Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB21_CUCSA2.447e-5078.05Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_MAIZE4.175e-5079.51Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB2B_PINSY9.300e-5076.42Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB2G_SOLLC1.215e-4976.42Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB27_TOBAC1.215e-4974.80Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB25_PETSP1.215e-4975.61Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB23_POLMU1.215e-4975.61Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB2A_PINSY1.586e-4976.42Chlorophyll a-b binding protein type 2 member 1A, ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-074-B02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665105 ID=EY665105; Name=EY665105; organism=Citrus sinensis; type=EST; length=543bp
CCACGCGTCCGTTGACTATCTTGGCAACCCCAACCTCATTCATGCTCAGA
GCATTTTGGCTATCTGGGCCTGCCAGGTTGTGCTCATGGGTTTTGTTGAA
GGATACAGAATTGGTGGCGGTCCTCTTGGTGAAGGACTTGACCCACTTTA
CCCTGGTGGTGCTTTTGACCCACTTGGTTTGGCTGATGACCCCGATCAAT
TTGCTGAGTTGAAGGTCAAGGAGCTCAAGAATGGCCGTCTGGCTATGTTC
TCCATGTTTGGATTCTTTGTTCAGGCTATTGTCACTGGGAAGGGTCCAAT
TGAGAACCTCTACGACCACATTGCTGATCCTGTGGCCAACAATGCCTGGG
CTTATGCCACTAACTTTGTTCCCGGAAAGTGAAGAAACTCATGACTTGAT
GGTGTCTGTTTCATCTGTAACATTATTCTATCTATCGTATGTGCTTTTGT
GGAAAACTCTGTCATGGACTTACTAGTAGCTCTGTAATGTTACCATTAGA
AATGCTATGCTCCTGATCTTTTATTTCAAAAAAAAAAAAAAAA
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